Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Reverse (-)

29781258 .. 29781836

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19018

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCAGAAAGTGTAGTTGCCTTTTTAGTCGGCAGGCTCAGGACGTTACTCGTAGATGAGGTGAAACTATTATCAGGGATCAAAGCACAGGTGGAGGACATGGTTGAGGAATTAGAGTGCATACAGGCATTCTTAAGGGTTGCTGATGCAAAGGAAGACAGCAACCCTCAGCTCATAGTGTGGGTTAAACAAGTTAGAGATGTGGCTCATCAGATGGAAGATGCCCTTGATAAATTCAGGCTTTCCAATTCACATGATGTCCAGCGTGGACTCCATGCTTTCCTTCAAAAGCTTTCTTGCATCATCATGAAACCGAAAGCTTGCCATCACATTGCAGCTGATATTCAACTCCTACAGTTGAATGTCCAAACGCTCTCAAAGGGACATAACAGATACCAACTTTATGATCAAGGTCTGCAATGTCAGTTTGGTCAAGTTTATGTCCTTTCACCAGAAGAGGCTGAGCCTGTGGGAATTGGAGAACGCAAAGAGAAGCTGATTGAGATGCTTATGTTGAATGTTTTCCGACAGCAGGTGGTTCCAGTAGTTGGAATGGGAGGATTAGGAAAACTACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

192

Amino Acids

21.61

Weight (kDa)

6.07

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	5 - 83	5.3e-23	Rx N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	523
Acc36I	ACCTGC	1 cut(s)	523
AccB7I	CCANNNNNTGG	1 cut(s)	548
AclWI	GGATC	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	532, 548
AflII	CTTAAG	1 cut(s)	133
AgsI	TTSAA	4 cut(s)	287, 347, 361, 517
AluBI	AGCT	5 cut(s)	172, 292, 320, 338, 496
AluI	AGCT	5 cut(s)	172, 292, 320, 338, 496
AlwI	GGATC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	521
AsuHPI	GGTGA	2 cut(s)	73, 441
BbsI	GAAGAC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	2 cut(s)	208, 333
BclI	TGATCA	1 cut(s)	406
BfmI	CTRYAG	1 cut(s)	353
BfrI	CTTAAG	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	523
BisI	GCNGC	1 cut(s)	336
BlpI	GCTNAGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	540
BmsI	GCATC	4 cut(s)	136, 211, 309, 495
BpiI	GAAGAC	1 cut(s)	162
Bpu10I	CCTNAGC	2 cut(s)	38, 168
Bpu1102I	GCTNAGC	1 cut(s)	462
Bsc4I	CCNNNNNNNGG	2 cut(s)	532, 548
Bse1I	ACTGG	1 cut(s)	542
Bse3DI	GCAATG	2 cut(s)	330, 425
BseLI	CCNNNNNNNGG	2 cut(s)	532, 548
BseMI	GCAATG	2 cut(s)	330, 425
BseMII	CTCAG	3 cut(s)	52, 182, 453
BseNI	ACTGG	1 cut(s)	542
BseXI	GCAGC	1 cut(s)	347
BslFI	GGGAC	1 cut(s)	396
BslI	CCNNNNNNNGG	2 cut(s)	532, 548
BsmFI	GGGAC	1 cut(s)	396
BsmI	GAATGC	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	78, 406
Bsp1720I	GCTNAGC	1 cut(s)	462
BspCNI	CTCAG	3 cut(s)	51, 181, 454
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	540
BspMI	ACCTGC	1 cut(s)	523
BspPI	GGATC	1 cut(s)	86
BspTI	CTTAAG	1 cut(s)	133
BsrDI	GCAATG	2 cut(s)	330, 425
BsrI	ACTGG	1 cut(s)	542
BssMI	GATC	2 cut(s)	78, 406
Bst4CI	ACNGT	1 cut(s)	357
Bst6I	CTCTTC	1 cut(s)	450
BstAFI	CTTAAG	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	35, 322
BstDEI	CTNAG	3 cut(s)	38, 168, 462
BstKTI	GATC	2 cut(s)	81, 409
BstMBI	GATC	2 cut(s)	78, 406
BstSFI	CTRYAG	1 cut(s)	353
BstV1I	GCAGC	1 cut(s)	347
BstV2I	GAAGAC	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	2 cut(s)	35, 322
CciI	TCATGA	1 cut(s)	306
CviAII	CATG	4 cut(s)	100, 254, 275, 307
DdeI	CTNAG	3 cut(s)	38, 168, 462
DpnI	GATC	2 cut(s)	80, 408
DpnII	GATC	2 cut(s)	78, 406
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
FaeI	CATG	4 cut(s)	103, 257, 278, 310
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	4 cut(s)	99, 253, 274, 306
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	1 cut(s)	336
Fsp4HI	GCNGC	1 cut(s)	336
GluI	GCNGC	1 cut(s)	336
Hin1II	CATG	4 cut(s)	103, 257, 278, 310
HindIII	AAGCTT	2 cut(s)	290, 318
HinfI	GANTC	1 cut(s)	270
HphI	GGTGA	2 cut(s)	73, 441
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	2 cut(s)	213, 527
Hpy188III	TCNNGA	2 cut(s)	40, 307
Hpy8I	GTNNAC	1 cut(s)	269
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	5 cut(s)	120, 149, 300, 335, 418
HpyF3I	CTNAG	3 cut(s)	38, 168, 462
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	4 cut(s)	103, 257, 278, 310
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	78, 406
Lsp1109I	GCAGC	1 cut(s)	347
LweI	GCATC	4 cut(s)	136, 211, 309, 495
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	2 cut(s)	80, 408
MboI	GATC	2 cut(s)	78, 406
MboII	GAAGA	3 cut(s)	167, 230, 467
MluCI	AATT	4 cut(s)	110, 233, 247, 474
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	2 cut(s)	529, 550
MnlI	CCTC	6 cut(s)	52, 88, 100, 177, 451, 551
MroXI	GAANNNNTTC	1 cut(s)	521
MseI	TTAA	2 cut(s)	134, 186
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	338
MspCI	CTTAAG	1 cut(s)	133
Mva1269I	GAATGC	1 cut(s)	128
NdeII	GATC	2 cut(s)	78, 406
NlaIII	CATG	4 cut(s)	103, 257, 278, 310
NlaIV	GGNNCC	1 cut(s)	540
PagI	TCATGA	1 cut(s)	306
PaqCI	CACCTGC	1 cut(s)	523
PctI	GAATGC	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	521
PflMI	CCANNNNNTGG	1 cut(s)	548
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	540
PvuII	CAGCTG	1 cut(s)	338
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	134, 186
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	2 cut(s)	78, 406
SchI	GAGTC	1 cut(s)	264
SfaNI	GCATC	4 cut(s)	136, 211, 309, 495
SfcI	CTRYAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	4 cut(s)	110, 233, 247, 474
TaaI	ACNGT	1 cut(s)	357
TaiI	ACGT	1 cut(s)	47
TasI	AATT	4 cut(s)	110, 233, 247, 474
Tru1I	TTAA	2 cut(s)	134, 186
Tru9I	TTAA	2 cut(s)	134, 186
TseI	GCWGC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	323
Van91I	CCANNNNNTGG	1 cut(s)	548
Vha464I	CTTAAG	1 cut(s)	133
XapI	RAATTY	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.