Rh2AG310100

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000482
Physical Location & Seq
Forward (+)
39457246 .. 39457566
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG310100.1

Sequence Viewer

Length: 321 bp
ATGGAGGTGGGAACAATGCCTTGTATTGAAAATCTAATCATCTGGCGCTGTAAATCACTGGAGAAAGTCCCATCAGGCATTGAACATCTCATCAAACTAAAGATGCTTAAGTTTTTTGATATGCCAGAAAAACTAATCAAGACTCTACTTCCACATGAGTATGGCAATGATTATTGGAAAGTTGCGCATGTCCCAGAAGTTTATGTCACCTACTTGAGAGAGTTTGGGTGGGAAGTATTCTCATTAGAGGGCTTGAGTGAGACACAAATCTCTTCTCAACCCAGTTCTGTCATCAAGAGCATTGGAACCGGTTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

106

Amino Acids

12.27

Weight (kDa)

6.28

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000482)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica MD06G1024000.v1.1
prunus_persica Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis pycom16g25280
rosa_chinensis RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii Rroxscaffold_3G00246720
rosa_rugosa Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 186
AflII CTTAAG 1 cut(s) 107
AgeI ACCGGT 1 cut(s) 308
AgsI TTSAA 2 cut(s) 29, 83
Alw26I GTCTC 1 cut(s) 254
AsiGI ACCGGT 1 cut(s) 308
AspLEI GCGC 2 cut(s) 48, 187
AsuHPI GGTGA 1 cut(s) 199
BccI CCATC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 254
BfoI RGCGCY 1 cut(s) 49
BfrI CTTAAG 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 307
BmrI ACTGGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 93
BmuI ACTGGG 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 80
BpuEI CTTGAG 2 cut(s) 235, 274
BsaWI WCCGGW 1 cut(s) 308
Bse118I RCCGGY 1 cut(s) 308
Bse1I ACTGG 2 cut(s) 63, 282
Bse3DI GCAATG 1 cut(s) 172
BseMI GCAATG 1 cut(s) 172
BseNI ACTGG 2 cut(s) 63, 282
BshTI ACCGGT 1 cut(s) 308
BsiSI CCGG 1 cut(s) 309
BslFI GGGAC 2 cut(s) 53, 176
BsmAI GTCTC 1 cut(s) 254
BsmFI GGGAC 2 cut(s) 53, 176
BspLI GGNNCC 1 cut(s) 307
BspTI CTTAAG 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 308
BsrI ACTGG 2 cut(s) 63, 282
BssAI RCCGGY 1 cut(s) 308
Bst6I CTCTTC 1 cut(s) 277
BstAFI CTTAAG 1 cut(s) 107
BstH2I RGCGCY 1 cut(s) 49
BstHHI GCGC 2 cut(s) 48, 187
BstMAI GTCTC 1 cut(s) 254
BstNSI RCATGY 1 cut(s) 191
BtsIMutI CAGTG 1 cut(s) 56
CfoI GCGC 2 cut(s) 48, 187
Cfr10I RCCGGY 1 cut(s) 308
CspAI ACCGGT 1 cut(s) 308
CviAII CATG 2 cut(s) 155, 188
CviJI RGCY 1 cut(s) 252
CviKI_1 RGCY 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 277
FaeI CATG 2 cut(s) 158, 191
FaiI YATR 5 cut(s) 122, 156, 162, 189, 204
FaqI GGGAC 2 cut(s) 53, 176
FatI CATG 2 cut(s) 154, 187
FspI TGCGCA 1 cut(s) 186
GlaI GCGC 2 cut(s) 47, 186
GsuI CTGGAG 1 cut(s) 80
HaeII RGCGCY 1 cut(s) 49
HapII CCGG 1 cut(s) 309
HhaI GCGC 2 cut(s) 48, 187
Hin1II CATG 2 cut(s) 158, 191
Hin6I GCGC 2 cut(s) 46, 185
HinP1I GCGC 2 cut(s) 46, 185
HinfI GANTC 1 cut(s) 142
HpaII CCGG 1 cut(s) 309
HphI GGTGA 1 cut(s) 199
Hpy188III TCNNGA 2 cut(s) 139, 295
Hsp92II CATG 2 cut(s) 158, 191
HspAI GCGC 2 cut(s) 46, 185
LpnPI CCDG 6 cut(s) 28, 44, 60, 138, 207, 295
LweI GCATC 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 205
MboII GAAGA 1 cut(s) 264
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 293
MnlI CCTC 1 cut(s) 241
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 159
MspCI CTTAAG 1 cut(s) 107
MspI CCGG 1 cut(s) 309
NlaIII CATG 2 cut(s) 158, 191
NlaIV GGNNCC 1 cut(s) 307
NmuCI GTSAC 1 cut(s) 205
NsbI TGCGCA 1 cut(s) 186
NspI RCATGY 1 cut(s) 191
PinAI ACCGGT 1 cut(s) 308
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 307
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 1 cut(s) 108
SchI GAGTC 1 cut(s) 136
SetI ASST 2 cut(s) 9, 212
SfaNI GCATC 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 3 cut(s) 107, 214, 253
SmoI CTYRAG 3 cut(s) 107, 214, 253
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
TspRI CASTG 1 cut(s) 63
Vha464I CTTAAG 1 cut(s) 107
XceI RCATGY 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.