Rh7BG258900

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
23581204 .. 23582340
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG258900.1

Sequence Viewer

Length: 1137 bp
ATGGCTGAAAGTGTAGTAACATTTTTAGTTTTCAAGCTTAAGACGTTACTCGAAGAAGAGGTGAAACTATTGTCAGGTATCCAAGTACAGGTCCAGGAAGTGGTTGATGAATTAGAGCGCATCCAGGCGTTCTTAAGGGTTGCTGATGCAAAGGAAGACAGCGATCCTCAGCTGAAAGTGTGGGTTAATCAAGTCAGAGATGTGGCTCATGAGATGGAAGATGCCCTTGATAAATTCAGGCATTCCCACTCACATGATCACGGTCATGGATTCCGAGCTTCCCTTCATAAGCTTTCTTGTATCATCAAGAAATGGAAAGCTCGCAGACAAATTGCTGCTGATATTGAAGGCCTAAAGTATAGAGTCACGAGTCTCTCAAAGGGGCAAGAGAGATACAAATTTGTTGATCAAGCTGGCTCCACCTCTGGTCGTCAGGTTCAACATCAGTTCTATCGAGGGGATGCCATTTTACTAGAAGAGGCTGAGCTGGTGGCAATTGGCGAGAGGAAAAGGAAACTTTTTGAGTTGCTTATGAAGGAAGAATCCACACGCCAGGTGGTTCCTATAGTTGGGATGGGAGGACTGGGAAAAACTACCTTGGTAAAGCAATTGTATGAGGATGCTAAAGTCAAAAAGCATTTTAAGGTACATGCTTGGATCACTGTCTCTCGATCATTCCAGATGAATAAGCTTCTTAGACACATGATCCATCAGATCTTCGAAGTTATCAGAAAACCAGTTCCTCAAGATGAAGAAATTGAAAGCATGGACGACAACCAGCTAAGAGAGAGAATTAAAAAATTGCTGCAGCATAGTAGGTACCTGATTGTTCTGGATGATCTATGGAACAGAGCAGACTGGGATGCCATCAATCATGCAATGCCAAACAACAATCGTGGTAGTCGAGTAATGCTCACTACTCGCAATGTTAATGTAGCCTCTGCCTCTTGCTTGGGGAACCTTGAGATGATCTACCGTTTAGAACCCTTATCTCCGGAGGATTCTTGGACTCTTTTCTGTAAGAAGACATTTCATGGAGAGTCATGCCTTCCAAATTTGGAGAAATATTGTCGAAGCATCTTAAGCAAATGTGGAGGACTACCCCTTTTGCAATTGTCGCAATCGGCGCTGTTCTAG

Protein Analysis

378

Amino Acids

43.62

Weight (kDa)

8.86

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 88 2.1e-25 Rx N-terminal domain
NB-ARC PF00931 169 - 348 2.4e-45 NB-ARC domain
nSTAND6 PF25201 179 - 264 3.5e-06 Novel STAND NTPase 6
AAA_16 PF13191 181 - 281 1e-05 AAA ATPase domain
NACHT PF05729 186 - 341 3.7e-06 NACHT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000482)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica MD06G1024000.v1.1
prunus_persica Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis pycom16g25280
rosa_chinensis RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii Rroxscaffold_3G00246720
rosa_rugosa Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 819
AccB1I GGYRCC 1 cut(s) 819
AccB7I CCANNNNNTGG 1 cut(s) 100
AccIII TCCGGA 1 cut(s) 994
AclWI GGATC 3 cut(s) 158, 665, 700
AcsI RAATTY 3 cut(s) 233, 398, 1054
AfaI GTAC 3 cut(s) 87, 648, 821
AfiI CCNNNNNNNGG 3 cut(s) 88, 100, 569
AflII CTTAAG 3 cut(s) 38, 133, 1081
AgsI TTSAA 4 cut(s) 34, 347, 440, 761
AjnI CCWGG 3 cut(s) 93, 123, 552
AluBI AGCT 9 cut(s) 37, 172, 278, 292, 320, 413, 487, 691, 781
AluI AGCT 9 cut(s) 37, 172, 278, 292, 320, 413, 487, 691, 781
Alw26I GTCTC 2 cut(s) 377, 670
AlwI GGATC 3 cut(s) 158, 665, 700
Aor13HI TCCGGA 1 cut(s) 994
AoxI GGCC 1 cut(s) 349
ApeKI GCWGC 3 cut(s) 335, 805, 808
ApoI RAATTY 3 cut(s) 233, 398, 1054
Asp718I GGTACC 1 cut(s) 819
AspLEI GCGC 2 cut(s) 120, 1129
AspS9I GGNCC 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 73
AsuII TTCGAA 1 cut(s) 720
AvaII GGWCC 1 cut(s) 91
BanI GGYRCC 1 cut(s) 819
BauI CACGAG 1 cut(s) 367
BbsI GAAGAC 2 cut(s) 162, 1031
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 3 cut(s) 322, 792, 820
BccI CCATC 4 cut(s) 208, 568, 717, 875
BciT130I CCWGG 3 cut(s) 95, 125, 554
BciVI GTATCC 1 cut(s) 89
BclI TGATCA 2 cut(s) 256, 406
BcoDI GTCTC 2 cut(s) 377, 670
BfaI CTAG 2 cut(s) 473, 1135
BfmI CTRYAG 2 cut(s) 564, 806
BfoI RGCGCY 1 cut(s) 1130
BfrI CTTAAG 3 cut(s) 38, 133, 1081
BfuI GTATCC 1 cut(s) 89
BglII AGATCT 1 cut(s) 714
BisI GCNGC 3 cut(s) 336, 806, 809
BlpI GCTNAGC 1 cut(s) 483
BlsI GCNGC 3 cut(s) 337, 807, 810
Bme1390I CCNGG 3 cut(s) 95, 125, 554
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 4 cut(s) 418, 561, 821, 959
BmrFI CCNGG 3 cut(s) 95, 125, 554
BmrI ACTGGG 2 cut(s) 593, 868
BmsI GCATC 7 cut(s) 129, 136, 211, 451, 610, 853, 1086
BmuI ACTGGG 2 cut(s) 593, 868
BpiI GAAGAC 2 cut(s) 162, 1031
BplI GAGNNNNNCTC 2 cut(s) 897, 929
Bpu10I CCTNAGC 1 cut(s) 168
Bpu1102I GCTNAGC 1 cut(s) 483
Bpu14I TTCGAA 1 cut(s) 720
BpuEI CTTGAG 2 cut(s) 729, 983
BsaJI CCNNGG 1 cut(s) 597
BsaWI WCCGGW 1 cut(s) 994
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 100, 569
Bse1I ACTGG 3 cut(s) 588, 737, 863
Bse3DI GCAATG 2 cut(s) 885, 931
BseAI TCCGGA 1 cut(s) 994
BseBI CCWGG 3 cut(s) 95, 125, 554
BseDI CCNNGG 1 cut(s) 597
BseGI GGATG 6 cut(s) 120, 466, 579, 625, 841, 868
BseLI CCNNNNNNNGG 3 cut(s) 88, 100, 569
BseMI GCAATG 2 cut(s) 885, 931
BseMII CTCAG 2 cut(s) 182, 474
BseNI ACTGG 3 cut(s) 588, 737, 863
BseXI GCAGC 3 cut(s) 322, 792, 820
BshFI GGCC 1 cut(s) 351
BshNI GGYRCC 1 cut(s) 819
BsiSI CCGG 1 cut(s) 995
BslI CCNNNNNNNGG 3 cut(s) 88, 100, 569
BsmAI GTCTC 2 cut(s) 377, 670
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 1 cut(s) 351
Bsp119I TTCGAA 1 cut(s) 720
Bsp13I TCCGGA 1 cut(s) 994
Bsp143I GATC 9 cut(s) 163, 256, 406, 657, 671, 705, 714, 838, 969
Bsp1720I GCTNAGC 1 cut(s) 483
BspANI GGCC 1 cut(s) 351
BspCNI CTCAG 2 cut(s) 181, 475
BspEI TCCGGA 1 cut(s) 994
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 4 cut(s) 418, 561, 821, 959
BspMAI CTGCAG 1 cut(s) 810
BspPI GGATC 3 cut(s) 158, 665, 700
BspT104I TTCGAA 1 cut(s) 720
BspT107I GGYRCC 1 cut(s) 819
BspTI CTTAAG 3 cut(s) 38, 133, 1081
BsrDI GCAATG 2 cut(s) 885, 931
BsrI ACTGG 3 cut(s) 588, 737, 863
BssECI CCNNGG 1 cut(s) 597
BssMI GATC 9 cut(s) 163, 256, 406, 657, 671, 705, 714, 838, 969
BssSI CACGAG 1 cut(s) 367
BssT1I CCWWGG 1 cut(s) 597
Bst2BI CACGAG 1 cut(s) 367
Bst2UI CCWGG 3 cut(s) 95, 125, 554
Bst4CI ACNGT 3 cut(s) 263, 664, 977
Bst6I CTCTTC 2 cut(s) 51, 471
BstAFI CTTAAG 3 cut(s) 38, 133, 1081
BstBI TTCGAA 1 cut(s) 720
BstC8I GCNNGC 2 cut(s) 322, 415
BstDEI CTNAG 4 cut(s) 168, 483, 695, 782
BstF5I GGATG 6 cut(s) 120, 466, 579, 625, 841, 868
BstH2I RGCGCY 1 cut(s) 1130
BstHHI GCGC 2 cut(s) 120, 1129
BstKTI GATC 9 cut(s) 166, 259, 409, 660, 674, 708, 717, 841, 972
BstMAI GTCTC 2 cut(s) 377, 670
BstMBI GATC 9 cut(s) 163, 256, 406, 657, 671, 705, 714, 838, 969
BstMWI GCNNNNNNNGC 3 cut(s) 1083, 1117, 1126
BstNI CCWGG 3 cut(s) 95, 125, 554
BstNSI RCATGY 1 cut(s) 653
BstSCI CCNGG 3 cut(s) 93, 123, 552
BstSFI CTRYAG 2 cut(s) 564, 806
BstV1I GCAGC 3 cut(s) 322, 792, 820
BstV2I GAAGAC 2 cut(s) 162, 1031
BstX2I RGATCY 1 cut(s) 714
BstYI RGATCY 1 cut(s) 714
BsuI GTATCC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 351
BtsCI GGATG 6 cut(s) 120, 466, 579, 625, 841, 868
BtsIMutI CAGTG 1 cut(s) 660
Cac8I GCNNGC 2 cut(s) 322, 415
CciI TCATGA 1 cut(s) 208
CfoI GCGC 2 cut(s) 120, 1129
Cfr13I GGNCC 1 cut(s) 91
Csp6I GTAC 3 cut(s) 86, 647, 820
CspCI CAANNNNNGTGG 2 cut(s) 877, 912
CviAII CATG 9 cut(s) 209, 254, 266, 650, 703, 766, 875, 1034, 1044
CviQI GTAC 3 cut(s) 86, 647, 820
DdeI CTNAG 4 cut(s) 168, 483, 695, 782
DpnI GATC 9 cut(s) 165, 258, 408, 659, 673, 707, 716, 840, 971
DpnII GATC 9 cut(s) 163, 256, 406, 657, 671, 705, 714, 838, 969
Eam1104I CTCTTC 2 cut(s) 51, 471
EarI CTCTTC 2 cut(s) 51, 471
Eco130I CCWWGG 1 cut(s) 597
Eco147I AGGCCT 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 91
EcoRII CCWGG 3 cut(s) 93, 123, 552
EcoT14I CCWWGG 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 597
FaeI CATG 9 cut(s) 212, 257, 269, 653, 706, 769, 878, 1037, 1047
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FatI CATG 9 cut(s) 208, 253, 265, 649, 702, 765, 874, 1033, 1043
FbaI TGATCA 2 cut(s) 256, 406
Fnu4HI GCNGC 3 cut(s) 336, 806, 809
FokI GGATG 6 cut(s) 107, 473, 586, 632, 848, 875
Fsp4HI GCNGC 3 cut(s) 336, 806, 809
FspBI CTAG 2 cut(s) 473, 1135
GlaI GCGC 2 cut(s) 119, 1128
GluI GCNGC 3 cut(s) 336, 806, 809
HaeII RGCGCY 1 cut(s) 1130
HaeIII GGCC 1 cut(s) 351
HapII CCGG 1 cut(s) 995
HhaI GCGC 2 cut(s) 120, 1129
Hin1II CATG 9 cut(s) 212, 257, 269, 653, 706, 769, 878, 1037, 1047
Hin6I GCGC 2 cut(s) 118, 1127
HinP1I GCGC 2 cut(s) 118, 1127
HindIII AAGCTT 3 cut(s) 35, 290, 689
HinfI GANTC 7 cut(s) 270, 363, 370, 542, 1001, 1009, 1040
HpaII CCGG 1 cut(s) 995
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 4 cut(s) 197, 275, 714, 731
Hpy188III TCNNGA 8 cut(s) 209, 307, 367, 669, 679, 746, 833, 995
HpyAV CCTTC 4 cut(s) 293, 341, 529, 1058
HpyCH4III ACNGT 3 cut(s) 263, 664, 977
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 4 cut(s) 149, 808, 878, 1111
HpyF10VI GCNNNNNNNGC 3 cut(s) 1083, 1117, 1126
HpyF3I CTNAG 4 cut(s) 168, 483, 695, 782
HpySE526I ACGT 1 cut(s) 44
Hsp92II CATG 9 cut(s) 212, 257, 269, 653, 706, 769, 878, 1037, 1047
HspAI GCGC 2 cut(s) 118, 1127
Kpn2I TCCGGA 1 cut(s) 994
KpnI GGTACC 1 cut(s) 823
Ksp22I TGATCA 2 cut(s) 256, 406
Kzo9I GATC 9 cut(s) 163, 256, 406, 657, 671, 705, 714, 838, 969
LmnI GCTCC 1 cut(s) 422
Lsp1109I GCAGC 3 cut(s) 322, 792, 820
LweI GCATC 7 cut(s) 129, 136, 211, 451, 610, 853, 1086
MaeI CTAG 2 cut(s) 473, 1135
MaeII ACGT 1 cut(s) 44
MaeIII GTNAC 3 cut(s) 16, 45, 364
MalI GATC 9 cut(s) 165, 258, 408, 659, 673, 707, 716, 840, 971
MboI GATC 9 cut(s) 163, 256, 406, 657, 671, 705, 714, 838, 969
MboII GAAGA 9 cut(s) 65, 68, 167, 230, 488, 551, 709, 764, 1036
MfeI CAATTG 3 cut(s) 495, 608, 1112
MflI RGATCY 1 cut(s) 714
MlyI GAGTC 4 cut(s) 372, 379, 1003, 1049
MroI TCCGGA 1 cut(s) 994
MseI TTAA 7 cut(s) 39, 134, 186, 642, 795, 930, 1082
MslI CAYNNNNRTG 2 cut(s) 252, 264
MspA1I CMGCKG 1 cut(s) 172
MspCI CTTAAG 3 cut(s) 38, 133, 1081
MspI CCGG 1 cut(s) 995
MspR9I CCNGG 3 cut(s) 95, 125, 554
MunI CAATTG 3 cut(s) 495, 608, 1112
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 3 cut(s) 95, 125, 554
MwoI GCNNNNNNNGC 3 cut(s) 1083, 1117, 1126
NdeII GATC 9 cut(s) 163, 256, 406, 657, 671, 705, 714, 838, 969
NlaIII CATG 9 cut(s) 212, 257, 269, 653, 706, 769, 878, 1037, 1047
NlaIV GGNNCC 4 cut(s) 418, 561, 821, 959
NmuCI GTSAC 1 cut(s) 364
NspI RCATGY 1 cut(s) 653
NspV TTCGAA 1 cut(s) 720
PagI TCATGA 1 cut(s) 208
PceI AGGCCT 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 901
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 3 cut(s) 270, 542, 1001
PflMI CCANNNNNTGG 1 cut(s) 100
PfoI TCCNGGA 1 cut(s) 93
PkrI GCNGC 3 cut(s) 337, 807, 810
PleI GAGTC 4 cut(s) 371, 378, 1003, 1048
PpsI GAGTC 4 cut(s) 371, 378, 1003, 1048
Psp6I CCWGG 3 cut(s) 93, 123, 552
PspGI CCWGG 3 cut(s) 93, 123, 552
PspN4I GGNNCC 4 cut(s) 418, 561, 821, 959
PspPI GGNCC 1 cut(s) 91
PstI CTGCAG 1 cut(s) 810
PsuI RGATCY 1 cut(s) 714
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 3 cut(s) 87, 648, 821
RsaNI GTAC 3 cut(s) 86, 647, 820
RseI CAYNNNNRTG 2 cut(s) 252, 264
SaqAI TTAA 7 cut(s) 39, 134, 186, 642, 795, 930, 1082
SatI GCNGC 3 cut(s) 336, 806, 809
Sau3AI GATC 9 cut(s) 163, 256, 406, 657, 671, 705, 714, 838, 969
Sau96I GGNCC 1 cut(s) 91
SchI GAGTC 4 cut(s) 372, 379, 1003, 1049
ScrFI CCNGG 3 cut(s) 95, 125, 554
SfaNI GCATC 7 cut(s) 129, 136, 211, 451, 610, 853, 1086
SfcI CTRYAG 2 cut(s) 564, 806
SfuI TTCGAA 1 cut(s) 720
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 2 cut(s) 252, 264
SmlI CTYRAG 5 cut(s) 38, 133, 744, 962, 1081
SmoI CTYRAG 5 cut(s) 38, 133, 744, 962, 1081
SseBI AGGCCT 1 cut(s) 351
SspI AATATT 1 cut(s) 1067
SspMI CTAG 2 cut(s) 473, 1135
StuI AGGCCT 1 cut(s) 351
StyD4I CCNGG 3 cut(s) 93, 123, 552
StyI CCWWGG 1 cut(s) 597
TaaI ACNGT 3 cut(s) 263, 664, 977
TaiI ACGT 1 cut(s) 47
TaqI TCGA 6 cut(s) 51, 454, 670, 720, 904, 1072
TatI WGTACW 1 cut(s) 85
TfiI GAWTC 3 cut(s) 270, 542, 1001
Tru1I TTAA 7 cut(s) 39, 134, 186, 642, 795, 930, 1082
Tru9I TTAA 7 cut(s) 39, 134, 186, 642, 795, 930, 1082
TscAI CASTG 1 cut(s) 667
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 3 cut(s) 335, 805, 808
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 6 cut(s) 123, 275, 548, 698, 765, 1022
TspRI CASTG 1 cut(s) 667
Van91I CCANNNNNTGG 1 cut(s) 100
Vha464I CTTAAG 3 cut(s) 38, 133, 1081
VpaK11BI GGWCC 1 cut(s) 91
XapI RAATTY 3 cut(s) 233, 398, 1054
XceI RCATGY 1 cut(s) 653
XcmI CCANNNNNNNNNTGG 1 cut(s) 553
XspI CTAG 2 cut(s) 473, 1135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.