Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Reverse (-)

29091183 .. 29092136

Gene Structure 954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG286200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTGGGCTGAGAAAGTTCGACGACTATCAATAGTTAACACACTGCAGAATGCACATCAAAAGAGGACACCATCTCAACTTCGTTCTTTGCTCCTTTTTGGGGTAGAAGATTCACTTACAGATTTTCCCATACCAAAATTGTTTCCTACAGGTGTTCAGTTGCTTACAGTATTAGACTTACAAGGTGCACATATGGATATGTTTCCAAGAGAGGTTGTCAAGCTTCTTCTTCTCAGGTATCTTAACTTGAGGCATACAAAGGTGAAACAAATTCAAGGCTCCATCAAGAAGCTACAAAACCTAGAGACCTTGGATCTTAAACACTCGCAAGTTGTTGAATTACCTTCTGAGATTTTGAATCTCAAGCGATTTCGTCATCTCCTGGCGTATCGTTATGAGGTTGAGTCATATGCACGCTTCAATGCCAGAAAAGGAGTTAAGGTCCCTGCAGGAATATGTGGCTTGCAATTGTTCCAGAAGCTCTGCTTTATAGAGGCAAATCAAGACAATGGTGCTTTAATGGCAAAGCTCGGGAGAATGAACCTACTAAGGAGGTTAGGCACTTTCAAGTTGAGAAAAGAAGATGGGGTCACCTTATGCTCGTCCGTCCAAAATATGACCAATCTTCGCTCGTTCTCTGTATCTTCAACAGAGAAGGACAAGATAATTGATCTTAGCCACATTTCTCGTGCTCCTCCATTTCTTCAGCGACTCTACTTGATAGGTCGTTTAGAAAAGTTACCACACTGGATTTCTTCTCTTCAAAACCAGGTCAGACTGTTTCTAAAATGGAGTCGGTTGAAGGAGGATCCACCAGTACATCTTCAGGGTTTGCCAAACCTGGTACATCTTGAACTGCTACAAGTTTATGGTAGAGGAAGCTTGCATTTTGAGGCAGCAGGGTTTCCAAGTCTGAAGTTATTAGGTATTGATAAATTGGATGAGCTACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

317

Amino Acids

36.43

Weight (kDa)

9.97

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	26 - 308	1.9e-33	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	321, 803, 816
AcsI	RAATTY	1 cut(s)	270
AcuI	CTGAAG	3 cut(s)	689, 809, 935
AfaI	GTAC	2 cut(s)	819, 846
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	9 cut(s)	275, 338, 358, 421, 568, 648, 764, 802, 854
AjnI	CCWGG	3 cut(s)	381, 768, 840
AluBI	AGCT	6 cut(s)	223, 292, 481, 529, 882, 946
AluI	AGCT	6 cut(s)	223, 292, 481, 529, 882, 946
Alw21I	GWGCWC	2 cut(s)	190, 694
Alw26I	GTCTC	1 cut(s)	299
Alw44I	GTGCAC	1 cut(s)	186
AlwI	GGATC	3 cut(s)	321, 803, 816
Ama87I	CYCGRG	1 cut(s)	530
ApaLI	GTGCAC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	896
ApoI	RAATTY	1 cut(s)	270
AspS9I	GGNCC	1 cut(s)	442
AsuHPI	GGTGA	2 cut(s)	274, 583
AvaI	CYCGRG	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	442
BaeGI	GKGCMC	1 cut(s)	190
BamHI	GGATCC	1 cut(s)	808
BauI	CACGAG	1 cut(s)	687
Bbv12I	GWGCWC	2 cut(s)	190, 694
BbvI	GCAGC	1 cut(s)	908
BccI	CCATC	3 cut(s)	79, 290, 578
BciT130I	CCWGG	3 cut(s)	383, 770, 842
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	3 cut(s)	44, 147, 447
BisI	GCNGC	1 cut(s)	897
BlsI	GCNGC	1 cut(s)	898
Bme1390I	CCNGG	3 cut(s)	383, 770, 842
Bme18I	GGWCC	1 cut(s)	442
BmeT110I	CYCGRG	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	3 cut(s)	280, 444, 810
BmrFI	CCNGG	3 cut(s)	383, 770, 842
BpuEI	CTTGAG	2 cut(s)	268, 347
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	309
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	752, 815
BseBI	CCWGG	3 cut(s)	383, 770, 842
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	946
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	2 cut(s)	247, 339
BseNI	ACTGG	2 cut(s)	752, 815
BseRI	GAGGAG	1 cut(s)	684
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	908
BsiHKAI	GWGCWC	2 cut(s)	190, 694
BsiHKCI	CYCGRG	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	428
BsmI	GAATGC	1 cut(s)	55
Bso31I	GGTCTC	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	530
Bsp1286I	GDGCHC	2 cut(s)	190, 694
Bsp143I	GATC	3 cut(s)	313, 670, 808
BspCNI	CTCAG	2 cut(s)	246, 340
BspLI	GGNNCC	3 cut(s)	280, 444, 810
BspMAI	CTGCAG	2 cut(s)	48, 451
BspPI	GGATC	3 cut(s)	321, 803, 816
BspTNI	GGTCTC	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	752, 815
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	3 cut(s)	313, 670, 808
BssSI	CACGAG	1 cut(s)	687
BssT1I	CCWWGG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	687
Bst2UI	CCWGG	3 cut(s)	383, 770, 842
Bst4CI	ACNGT	2 cut(s)	169, 780
Bst6I	CTCTTC	1 cut(s)	765
BstC8I	GCNNGC	3 cut(s)	415, 464, 884
BstDEI	CTNAG	5 cut(s)	9, 233, 348, 548, 674
BstEII	GGTNACC	1 cut(s)	589
BstF5I	GGATG	1 cut(s)	946
BstKTI	GATC	3 cut(s)	316, 673, 811
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	3 cut(s)	313, 670, 808
BstMWI	GCNNNNNNNGC	1 cut(s)	521
BstNI	CCWGG	3 cut(s)	383, 770, 842
BstPI	GGTNACC	1 cut(s)	589
BstSCI	CCNGG	3 cut(s)	381, 768, 840
BstSFI	CTRYAG	3 cut(s)	44, 147, 447
BstSLI	GKGCMC	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	908
BstX2I	RGATCY	2 cut(s)	313, 808
BstYI	RGATCY	2 cut(s)	313, 808
BtsCI	GGATG	1 cut(s)	946
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	2 cut(s)	41, 745
Cac8I	GCNNGC	3 cut(s)	415, 464, 884
Cfr13I	GGNCC	1 cut(s)	442
CsiI	ACCWGGT	2 cut(s)	768, 840
Csp6I	GTAC	2 cut(s)	818, 845
CviQI	GTAC	2 cut(s)	818, 845
DdeI	CTNAG	5 cut(s)	9, 233, 348, 548, 674
DpnI	GATC	3 cut(s)	315, 672, 810
DpnII	GATC	3 cut(s)	313, 670, 808
Eam1104I	CTCTTC	1 cut(s)	765
EarI	CTCTTC	1 cut(s)	765
Eco130I	CCWWGG	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	442
Eco57I	CTGAAG	3 cut(s)	689, 809, 935
Eco88I	CYCGRG	1 cut(s)	530
Eco91I	GGTNACC	1 cut(s)	589
EcoO109I	RGGNCCY	1 cut(s)	442
EcoO65I	GGTNACC	1 cut(s)	589
EcoRII	CCWGG	3 cut(s)	381, 768, 840
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
FalI	AAGNNNNNCTT	4 cut(s)	99, 131, 470, 502
FaqI	GGGAC	1 cut(s)	428
FauNDI	CATATG	2 cut(s)	192, 409
Fnu4HI	GCNGC	1 cut(s)	897
Fsp4HI	GCNGC	1 cut(s)	897
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	1 cut(s)	897
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HindIII	AAGCTT	2 cut(s)	221, 880
HinfI	GANTC	5 cut(s)	110, 358, 404, 711, 793
HpaI	GTTAAC	1 cut(s)	37
HphI	GGTGA	2 cut(s)	274, 583
Hpy166II	GTNNAC	2 cut(s)	37, 188
Hpy188I	TCNGA	3 cut(s)	349, 776, 915
Hpy188III	TCNNGA	5 cut(s)	286, 475, 503, 532, 851
Hpy8I	GTNNAC	2 cut(s)	37, 188
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	3 cut(s)	354, 649, 796
HpyCH4III	ACNGT	2 cut(s)	169, 780
HpyCH4V	TGCA	7 cut(s)	46, 53, 188, 413, 449, 466, 886
HpyF10VI	GCNNNNNNNGC	1 cut(s)	521
HpyF3I	CTNAG	5 cut(s)	9, 233, 348, 548, 674
KspAI	GTTAAC	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	313, 670, 808
LmnI	GCTCC	3 cut(s)	96, 284, 697
Lsp1109I	GCAGC	1 cut(s)	908
MabI	ACCWGGT	2 cut(s)	768, 840
MaeI	CTAG	1 cut(s)	302
MaeIII	GTNAC	2 cut(s)	589, 738
MalI	GATC	3 cut(s)	315, 672, 810
MboI	GATC	3 cut(s)	313, 670, 808
MfeI	CAATTG	1 cut(s)	467
MflI	RGATCY	2 cut(s)	313, 808
MhlI	GDGCHC	2 cut(s)	190, 694
MluCI	AATT	6 cut(s)	137, 270, 338, 467, 666, 935
MlyI	GAGTC	3 cut(s)	413, 705, 802
MseI	TTAA	5 cut(s)	36, 243, 318, 438, 518
MspR9I	CCNGG	3 cut(s)	383, 770, 842
MunI	CAATTG	1 cut(s)	467
Mva1269I	GAATGC	1 cut(s)	55
MvaI	CCWGG	3 cut(s)	383, 770, 842
MwoI	GCNNNNNNNGC	1 cut(s)	521
NdeI	CATATG	2 cut(s)	192, 409
NdeII	GATC	3 cut(s)	313, 670, 808
NlaIV	GGNNCC	3 cut(s)	280, 444, 810
NmuCI	GTSAC	1 cut(s)	589
PctI	GAATGC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	110, 358
PkrI	GCNGC	1 cut(s)	898
PleI	GAGTC	3 cut(s)	412, 705, 801
PpsI	GAGTC	3 cut(s)	412, 705, 801
PpuMI	RGGWCCY	1 cut(s)	442
Psp5II	RGGWCCY	1 cut(s)	442
Psp6I	CCWGG	3 cut(s)	381, 768, 840
PspEI	GGTNACC	1 cut(s)	589
PspGI	CCWGG	3 cut(s)	381, 768, 840
PspN4I	GGNNCC	3 cut(s)	280, 444, 810
PspPI	GGNCC	1 cut(s)	442
PspPPI	RGGWCCY	1 cut(s)	442
PstI	CTGCAG	2 cut(s)	48, 451
PsuI	RGATCY	2 cut(s)	313, 808
RsaI	GTAC	2 cut(s)	819, 846
RsaNI	GTAC	2 cut(s)	818, 845
SaqAI	TTAA	5 cut(s)	36, 243, 318, 438, 518
SatI	GCNGC	1 cut(s)	897
Sau3AI	GATC	3 cut(s)	313, 670, 808
Sau96I	GGNCC	1 cut(s)	442
SbfI	CCTGCAGG	1 cut(s)	451
SchI	GAGTC	3 cut(s)	413, 705, 802
ScrFI	CCNGG	3 cut(s)	383, 770, 842
SdaI	CCTGCAGG	1 cut(s)	451
SduI	GDGCHC	2 cut(s)	190, 694
SexAI	ACCWGGT	2 cut(s)	768, 840
SfcI	CTRYAG	3 cut(s)	44, 147, 447
SinI	GGWCC	1 cut(s)	442
SmlI	CTYRAG	2 cut(s)	247, 362
SmoI	CTYRAG	2 cut(s)	247, 362
Sse8387I	CCTGCAGG	1 cut(s)	451
Sse9I	AATT	6 cut(s)	137, 270, 338, 467, 666, 935
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	3 cut(s)	381, 768, 840
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	2 cut(s)	169, 780
TaqI	TCGA	1 cut(s)	19
TasI	AATT	6 cut(s)	137, 270, 338, 467, 666, 935
TatI	WGTACW	1 cut(s)	817
TfiI	GAWTC	2 cut(s)	110, 358
Tru1I	TTAA	5 cut(s)	36, 243, 318, 438, 518
Tru9I	TTAA	5 cut(s)	36, 243, 318, 438, 518
TscAI	CASTG	2 cut(s)	48, 752
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	1 cut(s)	896
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	1 cut(s)	554
TspGWI	ACGGA	1 cut(s)	595
TspRI	CASTG	2 cut(s)	48, 752
VneI	GTGCAC	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	1 cut(s)	270
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.