Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Reverse (-)

23913836 .. 23920082

Gene Structure 6247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG261800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTTGCTTACTGTACTAGACTTGGAAGGTGCACATTTGGAGAAGTTTCCAAGAGAAGTTGTCAAACTTCTTCTTCTCAAGTATCTTAGCTTGAGGGGTACCAAGGTGAAACAAATTCCAAGCTCCATCAAGAAGCTACAATACCTAGAGACCTTGGATCTTAAACACTCCCATGTAATGGAATTACCTGCGGAGATTTTCAATATCAAGCGACTTCGCCATCTCTTGGTGTACCGATATGAGGTAGAGTCATATGCACGTTCAACTGTCAAAAATGGAGTTAAGGTTCCTGCAGGAATATGTGGCTTGCAATCGCTCCAAAAGCTCTGCTTTATAGAGGCAAATCAAGGCAATGGTGCTTTAATGGCAGAGCTTGGGAGAATGGACCAACTAAGGAGGTTAGGCATTTACAAGTTGAGAGAAGAAGATGGGGCCACCTTATGCTCATCCGTCCAAAATATGACCAGCCTTCGCTCGTTGTCTGTATCTTCAGCAACGAAAGAGAAGATAATTGATCTGAGCCACATTTCTCGTGCTCCTCCATTTCTACAGCGACTATACTTGACAGGGCGTTTAGAGGAATTACCACACTGGATTTCTTCTCTTCAATACCTGGTCAGACTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

209

Amino Acids

23.88

Weight (kDa)

9.6

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	2 - 208	2.5e-34	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
Acc65I	GGTACC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	98
AccB7I	CCANNNNNTGG	2 cut(s)	178, 226
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	474
AfaI	GTAC	3 cut(s)	15, 100, 233
AfiI	CCNNNNNNNGG	3 cut(s)	178, 226, 241
AgsI	TTSAA	3 cut(s)	202, 264, 608
AjnI	CCWGG	1 cut(s)	612
AloI	GAACNNNNNNTCC	2 cut(s)	270, 302
AluBI	AGCT	5 cut(s)	90, 123, 136, 325, 373
AluI	AGCT	5 cut(s)	90, 123, 136, 325, 373
Alw21I	GWGCWC	2 cut(s)	34, 538
Alw26I	GTCTC	1 cut(s)	143
Alw44I	GTGCAC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	1 cut(s)	432
ApaLI	GTGCAC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	114
Asp718I	GGTACC	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	385, 432
AsuHPI	GGTGA	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	385
BaeGI	GKGCMC	1 cut(s)	34
BaeI	ACNNNNGTAYC	2 cut(s)	90, 123
BanI	GGYRCC	1 cut(s)	98
BarI	GAAGNNNNNNTAC	2 cut(s)	125, 157
BauI	CACGAG	1 cut(s)	531
Bbv12I	GWGCWC	2 cut(s)	34, 538
BccI	CCATC	3 cut(s)	134, 228, 422
BciT130I	CCWGG	1 cut(s)	614
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	2 cut(s)	17, 146
BfmI	CTRYAG	2 cut(s)	291, 548
BfuAI	ACCTGC	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	614
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	2 cut(s)	385, 432
BmiI	GGNNCC	3 cut(s)	100, 288, 433
BmrFI	CCNGG	1 cut(s)	614
BpuEI	CTTGAG	2 cut(s)	62, 112
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	102, 153
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 226, 241
Bse1I	ACTGG	1 cut(s)	596
Bse3DI	GCAATG	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	2 cut(s)	102, 153
BseGI	GGATG	1 cut(s)	446
BseLI	CCNNNNNNNGG	3 cut(s)	178, 226, 241
BseMI	GCAATG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	509
BseNI	ACTGG	1 cut(s)	596
BseRI	GAGGAG	1 cut(s)	528
BseSI	GKGCMC	1 cut(s)	34
BshFI	GGCC	1 cut(s)	434
BshNI	GGYRCC	1 cut(s)	98
BsiHKAI	GWGCWC	2 cut(s)	34, 538
BslI	CCNNNNNNNGG	3 cut(s)	178, 226, 241
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	434
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	34, 538
Bsp143I	GATC	2 cut(s)	157, 514
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	1 cut(s)	510
BspLI	GGNNCC	3 cut(s)	100, 288, 433
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	596
BssECI	CCNNGG	2 cut(s)	102, 153
BssMI	GATC	2 cut(s)	157, 514
BssSI	CACGAG	1 cut(s)	531
BssT1I	CCWWGG	2 cut(s)	102, 153
Bst2BI	CACGAG	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	3 cut(s)	13, 268, 624
Bst6I	CTCTTC	1 cut(s)	609
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	3 cut(s)	86, 392, 518
BstF5I	GGATG	1 cut(s)	446
BstKTI	GATC	2 cut(s)	160, 517
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	157, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	322, 365
BstNI	CCWGG	1 cut(s)	614
BstSCI	CCNGG	1 cut(s)	612
BstSFI	CTRYAG	2 cut(s)	291, 548
BstSLI	GKGCMC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	434
BtsCI	GGATG	1 cut(s)	446
BtsIMutI	CAGTG	1 cut(s)	589
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	385, 432
CsiI	ACCWGGT	1 cut(s)	612
Csp6I	GTAC	3 cut(s)	14, 99, 232
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	9 cut(s)	90, 123, 136, 306, 325, 373, 434, 468, 522
CviKI_1	RGCY	9 cut(s)	90, 123, 136, 306, 325, 373, 434, 468, 522
CviQI	GTAC	3 cut(s)	14, 99, 232
DdeI	CTNAG	3 cut(s)	86, 392, 518
DpnI	GATC	2 cut(s)	159, 516
DpnII	GATC	2 cut(s)	157, 514
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
Eco130I	CCWWGG	2 cut(s)	102, 153
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	612
EcoT14I	CCWWGG	2 cut(s)	102, 153
ErhI	CCWWGG	2 cut(s)	102, 153
FaeI	CATG	1 cut(s)	176
FaiI	YATR	9 cut(s)	174, 240, 253, 255, 301, 335, 442, 461, 559
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	1 cut(s)	172
FauNDI	CATATG	1 cut(s)	253
FokI	GGATG	1 cut(s)	433
FspBI	CTAG	2 cut(s)	17, 146
HaeIII	GGCC	1 cut(s)	434
Hin1II	CATG	1 cut(s)	176
HinfI	GANTC	1 cut(s)	248
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	32, 232
Hpy188I	TCNGA	2 cut(s)	519, 620
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	2 cut(s)	32, 232
HpyAV	CCTTC	2 cut(s)	20, 479
HpyCH4III	ACNGT	3 cut(s)	13, 268, 624
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	4 cut(s)	32, 257, 293, 310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	322, 365
HpyF3I	CTNAG	3 cut(s)	86, 392, 518
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	1 cut(s)	176
KpnI	GGTACC	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	157, 514
LmnI	GCTCC	3 cut(s)	128, 321, 541
LpnPI	CCDG	8 cut(s)	201, 279, 303, 478, 552, 577, 599, 626
MabI	ACCWGGT	1 cut(s)	612
MaeI	CTAG	2 cut(s)	17, 146
MaeII	ACGT	1 cut(s)	259
MalI	GATC	2 cut(s)	159, 516
MboI	GATC	2 cut(s)	157, 514
MboII	GAAGA	8 cut(s)	62, 65, 434, 437, 480, 517, 591, 596
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	2 cut(s)	34, 538
MluCI	AATT	4 cut(s)	114, 182, 510, 581
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	6 cut(s)	87, 235, 331, 390, 549, 571
MseI	TTAA	3 cut(s)	162, 282, 362
MslI	CAYNNNNRTG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	614
MvaI	CCWGG	1 cut(s)	614
MwoI	GCNNNNNNNGC	2 cut(s)	322, 365
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	2 cut(s)	157, 514
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	3 cut(s)	100, 288, 433
PflMI	CCANNNNNTGG	2 cut(s)	178, 226
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	612
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	3 cut(s)	100, 288, 433
PspPI	GGNCC	2 cut(s)	385, 432
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	3 cut(s)	15, 100, 233
RsaNI	GTAC	3 cut(s)	14, 99, 232
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	162, 282, 362
Sau3AI	GATC	2 cut(s)	157, 514
Sau96I	GGNCC	2 cut(s)	385, 432
SbfI	CCTGCAGG	1 cut(s)	295
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	614
SdaI	CCTGCAGG	1 cut(s)	295
SduI	GDGCHC	2 cut(s)	34, 538
SexAI	ACCWGGT	1 cut(s)	612
SfcI	CTRYAG	2 cut(s)	291, 548
SinI	GGWCC	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	2 cut(s)	77, 91
SmoI	CTYRAG	2 cut(s)	77, 91
Sse8387I	CCTGCAGG	1 cut(s)	295
Sse9I	AATT	4 cut(s)	114, 182, 510, 581
SsiI	CCGC	1 cut(s)	191
SspMI	CTAG	2 cut(s)	17, 146
StyD4I	CCNGG	1 cut(s)	612
StyI	CCWWGG	2 cut(s)	102, 153
TaaI	ACNGT	3 cut(s)	13, 268, 624
TaiI	ACGT	1 cut(s)	262
TasI	AATT	4 cut(s)	114, 182, 510, 581
TatI	WGTACW	1 cut(s)	13
Tru1I	TTAA	3 cut(s)	162, 282, 362
Tru9I	TTAA	3 cut(s)	162, 282, 362
TscAI	CASTG	1 cut(s)	596
TspGWI	ACGGA	1 cut(s)	439
TspRI	CASTG	1 cut(s)	596
Van91I	CCANNNNNTGG	2 cut(s)	178, 226
VneI	GTGCAC	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	1 cut(s)	114
XspI	CTAG	2 cut(s)	17, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.