Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Reverse (-)

29555798 .. 29557218

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG274800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGTTGAGGAATTAGAGTGCATACAGGCATTCTTAAGGGTTGCTGATGCAAAGGAAGACAGCAACCCTCAGCTCATAGTGTGGGTTAAACAAGTTAGAGATGTGGCTCATCAGATGGAAGATGCCCTTGATAAATTCAGGCTTTCCAATTCACATGATGTCCAGCGTGGACTCCATGCTTTCCTTCAAAAGCTTTCTTGCTTCATCATGAAACCGAAAGCTTGCCATCACATTGCAGCTGATATTCAACTCCTACAGTTGAATGTCCAAACGCTCTCAAAGGGACATAACAGATACCAACTTTATGATCAAGGTCTGCAATGTCAGTTTGGTCAAGTTTATGTCCTTTCACCAGAAGAGGCTGAGCCTGTGGGAATTGGAGAACGCAAAGAGAAGCTGATTGAGATGCTTATGTTGAATGTTTTCCGACAGCAGGTGGTTCCAGTAGTTGGAATGGGAGGATTAGGAAAACTACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

159

Amino Acids

18.06

Weight (kDa)

6.29

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	3 - 50	3.5e-14	Rx N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	424
Acc36I	ACCTGC	1 cut(s)	424
AccB7I	CCANNNNNTGG	1 cut(s)	449
AcsI	RAATTY	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	433, 449
AflII	CTTAAG	1 cut(s)	34
AgsI	TTSAA	4 cut(s)	188, 248, 262, 418
AluBI	AGCT	5 cut(s)	73, 193, 221, 239, 397
AluI	AGCT	5 cut(s)	73, 193, 221, 239, 397
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	134
Asp700I	GAANNNNTTC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	63
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	2 cut(s)	109, 234
BclI	TGATCA	1 cut(s)	307
BfmI	CTRYAG	1 cut(s)	254
BfrI	CTTAAG	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	424
BisI	GCNGC	1 cut(s)	237
BlpI	GCTNAGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	441
BmsI	GCATC	3 cut(s)	37, 112, 396
BpiI	GAAGAC	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	69
Bpu1102I	GCTNAGC	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 449
Bse1I	ACTGG	1 cut(s)	443
Bse3DI	GCAATG	2 cut(s)	231, 326
BseLI	CCNNNNNNNGG	2 cut(s)	433, 449
BseMI	GCAATG	2 cut(s)	231, 326
BseMII	CTCAG	2 cut(s)	83, 354
BseNI	ACTGG	1 cut(s)	443
BseXI	GCAGC	1 cut(s)	248
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	2 cut(s)	433, 449
BsmFI	GGGAC	1 cut(s)	297
BsmI	GAATGC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	307
Bsp1720I	GCTNAGC	1 cut(s)	363
BspCNI	CTCAG	2 cut(s)	82, 355
BspHI	TCATGA	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	441
BspMI	ACCTGC	1 cut(s)	424
BspTI	CTTAAG	1 cut(s)	34
BsrDI	GCAATG	2 cut(s)	231, 326
BsrI	ACTGG	1 cut(s)	443
BssMI	GATC	1 cut(s)	307
Bst4CI	ACNGT	1 cut(s)	258
Bst6I	CTCTTC	1 cut(s)	351
BstAFI	CTTAAG	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	2 cut(s)	69, 363
BstKTI	GATC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	307
BstSFI	CTRYAG	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	248
BstV2I	GAAGAC	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	223
CciI	TCATGA	1 cut(s)	207
CviAII	CATG	3 cut(s)	155, 176, 208
CviJI	RGCY	9 cut(s)	73, 107, 142, 193, 221, 239, 362, 367, 397
CviKI_1	RGCY	9 cut(s)	73, 107, 142, 193, 221, 239, 362, 367, 397
DdeI	CTNAG	2 cut(s)	69, 363
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
FaeI	CATG	3 cut(s)	158, 179, 211
FaiI	YATR	9 cut(s)	23, 77, 156, 177, 209, 288, 306, 342, 413
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	3 cut(s)	154, 175, 207
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	237
GluI	GCNGC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	158, 179, 211
HindIII	AAGCTT	2 cut(s)	191, 219
HinfI	GANTC	1 cut(s)	171
HphI	GGTGA	1 cut(s)	342
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	2 cut(s)	114, 428
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	258
HpyCH4V	TGCA	4 cut(s)	21, 50, 236, 319
HpyF3I	CTNAG	2 cut(s)	69, 363
Hsp92II	CATG	3 cut(s)	158, 179, 211
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	307
LpnPI	CCDG	7 cut(s)	11, 124, 176, 366, 381, 419, 456
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	3 cut(s)	37, 112, 396
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	3 cut(s)	68, 131, 368
MluCI	AATT	4 cut(s)	11, 134, 148, 375
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	2 cut(s)	430, 451
MnlI	CCTC	3 cut(s)	78, 352, 452
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	2 cut(s)	35, 87
MspA1I	CMGCKG	1 cut(s)	239
MspCI	CTTAAG	1 cut(s)	34
Mva1269I	GAATGC	1 cut(s)	29
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	3 cut(s)	158, 179, 211
NlaIV	GGNNCC	1 cut(s)	441
PagI	TCATGA	1 cut(s)	207
PaqCI	CACCTGC	1 cut(s)	424
PctI	GAATGC	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	422
PflMI	CCANNNNNTGG	1 cut(s)	449
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	441
PvuII	CAGCTG	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	35, 87
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	307
SchI	GAGTC	1 cut(s)	165
SetI	ASST	8 cut(s)	75, 195, 223, 241, 316, 399, 438, 478
SfaNI	GCATC	3 cut(s)	37, 112, 396
SfcI	CTRYAG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	4 cut(s)	11, 134, 148, 375
TaaI	ACNGT	1 cut(s)	258
TasI	AATT	4 cut(s)	11, 134, 148, 375
Tru1I	TTAA	2 cut(s)	35, 87
Tru9I	TTAA	2 cut(s)	35, 87
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	193, 224
Van91I	CCANNNNNTGG	1 cut(s)	449
Vha464I	CTTAAG	1 cut(s)	34
XapI	RAATTY	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.