Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038076.1

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Reverse (-)

1339 .. 1725

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038076.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atggcggagagtgcagtaaagtttctacttgacaagcttgcacctcttttcgaaaatgagttgcaacttttgaggggggttagggaagaaattttgcatctaagaggagaactggagcgcatgacggctttcctgagggttgctgatgcatatgaagagagtgatgcggaactcaaagtatgggttaaacaactaagagacattgctcacgaaagtgaagatgttcttgatgaatttacccttctgcaagcacatgatcatgatcatggggagggattatatggttcaatccataagctttcttgctgcatcaagaatacaaaagctcgatatcgaattgcttcggagttacgagccataaactccaggatcaaaaaaaatctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

128

Amino Acids

14.79

Weight (kDa)

5.87

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 167
AclWI	GGATC	1 cut(s)	377
AcsI	RAATTY	2 cut(s)	90, 233
AgsI	TTSAA	1 cut(s)	288
AjnI	CCWGG	1 cut(s)	365
AleI	CACNNNNGTG	1 cut(s)	213
AluBI	AGCT	3 cut(s)	37, 298, 326
AluI	AGCT	3 cut(s)	37, 298, 326
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	377
ApeKI	GCWGC	1 cut(s)	306
ApoI	RAATTY	2 cut(s)	90, 233
Asp700I	GAANNNNTTC	2 cut(s)	222, 340
AspLEI	GCGC	1 cut(s)	120
AsuII	TTCGAA	1 cut(s)	51
AxyI	CCTNAGG	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	367
BclI	TGATCA	2 cut(s)	256, 262
BcoDI	GTCTC	1 cut(s)	192
BisI	GCNGC	1 cut(s)	307
BlsI	GCNGC	1 cut(s)	308
Bme1390I	CCNGG	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	367
BmsI	GCATC	4 cut(s)	106, 136, 154, 318
BpmI	CTGGAG	2 cut(s)	134, 349
Bpu14I	TTCGAA	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	117
Bse21I	CCTNAGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	201
Bse8I	GATNNNNATC	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	367
BseJI	GATNNNNATC	1 cut(s)	261
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	33
BsmAI	GTCTC	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	256, 262, 369
BspACI	CCGC	2 cut(s)	5, 167
BspCNI	CTCAG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	259
BspPI	GGATC	1 cut(s)	377
BspT104I	TTCGAA	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	117
BssMI	GATC	3 cut(s)	256, 262, 369
Bst2UI	CCWGG	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	150
BstBI	TTCGAA	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	39, 249
BstDEI	CTNAG	3 cut(s)	101, 134, 194
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	3 cut(s)	259, 265, 372
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	3 cut(s)	256, 262, 369
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	293
Bsu36I	CCTNAGG	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	39, 249
CciI	TCATGA	1 cut(s)	259
CfoI	GCGC	1 cut(s)	120
CviAII	CATG	4 cut(s)	121, 254, 260, 266
CviJI	RGCY	5 cut(s)	37, 128, 298, 326, 356
CviKI_1	RGCY	5 cut(s)	37, 128, 298, 326, 356
DdeI	CTNAG	3 cut(s)	101, 134, 194
DpnI	GATC	3 cut(s)	258, 264, 371
DpnII	GATC	3 cut(s)	256, 262, 369
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	20
Eco32I	GATATC	1 cut(s)	332
Eco81I	CCTNAGG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	365
EcoRV	GATATC	1 cut(s)	332
EcoT22I	ATGCAT	1 cut(s)	151
FaeI	CATG	4 cut(s)	124, 257, 263, 269
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	4 cut(s)	120, 253, 259, 265
FauNDI	CATATG	1 cut(s)	151
FbaI	TGATCA	2 cut(s)	256, 262
Fnu4HI	GCNGC	1 cut(s)	307
Fsp4HI	GCNGC	1 cut(s)	307
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	1 cut(s)	307
GsuI	CTGGAG	2 cut(s)	134, 349
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	124, 257, 263, 269
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HindIII	AAGCTT	2 cut(s)	35, 296
Hpy188I	TCNGA	2 cut(s)	346, 386
Hpy188III	TCNNGA	5 cut(s)	133, 209, 227, 260, 313
HpyAV	CCTTC	1 cut(s)	251
HpyCH4V	TGCA	7 cut(s)	14, 41, 64, 97, 149, 247, 309
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	101, 134, 194
Hsp92II	CATG	4 cut(s)	124, 257, 263, 269
HspAI	GCGC	1 cut(s)	118
Ksp22I	TGATCA	2 cut(s)	256, 262
Kzo9I	GATC	3 cut(s)	256, 262, 369
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	4 cut(s)	98, 146, 352, 379
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	4 cut(s)	106, 136, 154, 318
MaeIII	GTNAC	1 cut(s)	348
MalI	GATC	3 cut(s)	258, 264, 371
MboI	GATC	3 cut(s)	256, 262, 369
MboII	GAAGA	3 cut(s)	98, 167, 230
MluCI	AATT	3 cut(s)	90, 233, 336
MnlI	CCTC	5 cut(s)	54, 66, 98, 129, 265
Mph1103I	ATGCAT	1 cut(s)	151
MroXI	GAANNNNTTC	2 cut(s)	222, 340
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	3 cut(s)	213, 258, 264
MspR9I	CCNGG	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	3 cut(s)	256, 262, 369
NlaIII	CATG	4 cut(s)	124, 257, 263, 269
NsiI	ATGCAT	1 cut(s)	151
NspV	TTCGAA	1 cut(s)	51
OliI	CACNNNNGTG	1 cut(s)	213
PagI	TCATGA	1 cut(s)	259
PdmI	GAANNNNTTC	2 cut(s)	222, 340
PfoI	TCCNGGA	1 cut(s)	365
PkrI	GCNGC	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
RseI	CAYNNNNRTG	3 cut(s)	213, 258, 264
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	1 cut(s)	307
Sau3AI	GATC	3 cut(s)	256, 262, 369
ScrFI	CCNGG	1 cut(s)	367
SetI	ASST	4 cut(s)	39, 46, 300, 328
SfaNI	GCATC	4 cut(s)	106, 136, 154, 318
SfuI	TTCGAA	1 cut(s)	51
SmiMI	CAYNNNNRTG	3 cut(s)	213, 258, 264
Sse9I	AATT	3 cut(s)	90, 233, 336
SsiI	CCGC	2 cut(s)	5, 167
StyD4I	CCNGG	1 cut(s)	365
TaqI	TCGA	3 cut(s)	51, 328, 334
TasI	AATT	3 cut(s)	90, 233, 336
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TseI	GCWGC	1 cut(s)	306
TspDTI	ATGAA	2 cut(s)	168, 246
XapI	RAATTY	2 cut(s)	90, 233
XmnI	GAANNNNTTC	2 cut(s)	222, 340
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.