Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005246.1

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Reverse (-)

69818 .. 71744

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005246.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atgaagttgagtcttatgcacgctttaattccaaatatggagttaaggttcttgcaggaatatgtggcttggaaaatctccaaaaagctatgtaaaatagaggcaaatcaagacaatggtgctttaatggcagaccttgaaagattgactcaactaatgaggttatgcattttaaagttgagagaagaagatggactagccttatgtttatccattcaaaagatgaaaacccttcgcgtattgtctgtatctttagcagagaaggaagggacaattgatctgagccatatttcttgtgctcctaaatttcttcagcgactgtacttgacaggtcatttagaaaacttaccacactggatttcttctcttcaaaacctgttcagactgtttctaaaatggagttggttgaaggaggatcctgttgtccatcttcaacgtttgccaaatttggtacatcttgaactcctacaagtttatgatggggaaagcttgcattttgagtcaagagggtttccaaatctaaagttacttggtattgataaattagaagaacttcaattggtaaagatagataagggagcaatgccttgtctagaaaagcttattatccaacgctgtaaattgttgaagaaggtcccatatggcattgaattcttaaccatttttaagttgcttgaatttttcgatatgccagatgaattaatcatgcgactacatccagatggtggagaagatcattggagagtcactcatgtcccgactgtttattattcctattggaaaggtggcggttgggatgtctactcattagtcaatgacggggagggagctcatctagccttctcggccagcatcgaactgcttcagacagcaagcagccagcataccggccagccagaccagcagcacccctgcgcctctgacagcaccctgctagcctcgctagccctacgctatacatcccgcacctccgacagccctgctagcctcgctagcccaacgctgcgcacccaagtgccatcttcggcccctcatcctctaacagtgcctgcacgcaacctgccatccactgccgagccatctagggtcccccatcgacgctacactgactccaaaaatcaaagatcaaggttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

378

Amino Acids

43.11

Weight (kDa)

8.37

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1007
Acc36I	ACCTGC	1 cut(s)	1068
AccB7I	CCANNNNNTGG	1 cut(s)	725
AccI	GTMKAC	1 cut(s)	801
AccII	CGCG	1 cut(s)	237
AciI	CCGC	2 cut(s)	789, 964
AclI	AACGTT	1 cut(s)	436
AclWI	GGATC	2 cut(s)	410, 423
AcoI	YGGCCR	2 cut(s)	846, 889
AcsI	RAATTY	4 cut(s)	305, 445, 650, 677
AcuI	CTGAAG	2 cut(s)	296, 848
AfaI	GTAC	2 cut(s)	323, 453
AfiI	CCNNNNNNNGG	1 cut(s)	725
AleI	CACNNNNGTG	1 cut(s)	1013
AloI	GAACNNNNNNTCC	2 cut(s)	32, 64
AluBI	AGCT	4 cut(s)	88, 489, 601, 830
AluI	AGCT	4 cut(s)	88, 489, 601, 830
Alw21I	GWGCWC	2 cut(s)	301, 832
AlwI	GGATC	2 cut(s)	410, 423
AlwNI	CAGNNNCTG	2 cut(s)	319, 1049
AoxI	GGCC	3 cut(s)	846, 889, 1026
ApeKI	GCWGC	3 cut(s)	876, 904, 1003
ApoI	RAATTY	4 cut(s)	305, 445, 650, 677
AseI	ATTAAT	1 cut(s)	701
Asp700I	GAANNNNTTC	2 cut(s)	552, 861
AspLEI	GCGC	2 cut(s)	917, 1008
AspS9I	GGNCC	3 cut(s)	634, 1027, 1087
AsuNHI	GCTAGC	4 cut(s)	934, 943, 983, 992
AvaII	GGWCC	2 cut(s)	634, 1087
BamHI	GGATCC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	832
Bbv12I	GWGCWC	2 cut(s)	301, 832
BbvI	GCAGC	3 cut(s)	888, 916, 990
BccI	CCATC	8 cut(s)	185, 435, 473, 716, 1027, 1072, 1087, 1101
BcgI	CGANNNNNNTGC	2 cut(s)	962, 996
BfaI	CTAG	8 cut(s)	197, 593, 836, 935, 944, 984, 993, 1083
BfuAI	ACCTGC	1 cut(s)	1068
BglI	GCCNNNNNGGC	1 cut(s)	845
BisI	GCNGC	3 cut(s)	877, 905, 1004
BlsI	GCNGC	3 cut(s)	878, 906, 1005
Bme18I	GGWCC	2 cut(s)	634, 1087
BmgT120I	GGNCC	3 cut(s)	634, 1027, 1087
BmiI	GGNNCC	5 cut(s)	417, 636, 1029, 1088, 1089
BmsI	GCATC	1 cut(s)	861
BmtI	GCTAGC	4 cut(s)	938, 947, 987, 996
BplI	GAGNNNNNCTC	2 cut(s)	733, 765
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 1094, 1124
Bsc4I	CCNNNNNNNGG	1 cut(s)	725
Bse118I	RCCGGY	1 cut(s)	887
Bse1I	ACTGG	1 cut(s)	359
Bse3DI	GCAATG	1 cut(s)	588
BseGI	GGATG	5 cut(s)	715, 802, 959, 1033, 1064
BseLI	CCNNNNNNNGG	1 cut(s)	725
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	359
BseXI	GCAGC	3 cut(s)	888, 916, 990
BsgI	GTGCAG	1 cut(s)	1035
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	3 cut(s)	848, 891, 1028
BsiHKAI	GWGCWC	2 cut(s)	301, 832
BsiSI	CCGG	1 cut(s)	888
BslFI	GGGAC	4 cut(s)	283, 620, 740, 1073
BslI	CCNNNNNNNGG	1 cut(s)	725
BsmFI	GGGAC	4 cut(s)	283, 620, 740, 1073
BsnI	GGCC	3 cut(s)	848, 891, 1028
Bsp1286I	GDGCHC	2 cut(s)	301, 832
Bsp143I	GATC	4 cut(s)	277, 415, 733, 1124
BspACI	CCGC	2 cut(s)	789, 964
BspANI	GGCC	3 cut(s)	848, 891, 1028
BspCNI	CTCAG	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	5 cut(s)	417, 636, 1029, 1088, 1089
BspMI	ACCTGC	1 cut(s)	1068
BspOI	GCTAGC	4 cut(s)	938, 947, 987, 996
BspPI	GGATC	2 cut(s)	410, 423
BsrDI	GCAATG	1 cut(s)	588
BsrFI	RCCGGY	1 cut(s)	887
BsrI	ACTGG	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	887
BssMI	GATC	4 cut(s)	277, 415, 733, 1124
Bst4CI	ACNGT	4 cut(s)	321, 387, 763, 1045
Bst6I	CTCTTC	1 cut(s)	372
BstDEI	CTNAG	1 cut(s)	281
BstF5I	GGATG	5 cut(s)	715, 802, 959, 1033, 1064
BstFNI	CGCG	1 cut(s)	237
BstHHI	GCGC	2 cut(s)	917, 1008
BstKTI	GATC	4 cut(s)	280, 418, 736, 1127
BstMBI	GATC	4 cut(s)	277, 415, 733, 1124
BstMWI	GCNNNNNNNGC	9 cut(s)	128, 836, 845, 901, 940, 944, 984, 989, 993
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	3 cut(s)	888, 916, 990
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	848, 891, 1028
BtsCI	GGATG	5 cut(s)	715, 802, 959, 1033, 1064
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	4 cut(s)	352, 1050, 1068, 1104
BveI	ACCTGC	1 cut(s)	1068
CaiI	CAGNNNCTG	2 cut(s)	319, 1049
CfoI	GCGC	2 cut(s)	917, 1008
Cfr10I	RCCGGY	1 cut(s)	887
Cfr13I	GGNCC	3 cut(s)	634, 1027, 1087
CseI	GACGC	1 cut(s)	1107
Csp6I	GTAC	2 cut(s)	322, 452
CviAII	CATG	2 cut(s)	706, 752
CviQI	GTAC	2 cut(s)	322, 452
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	4 cut(s)	279, 417, 735, 1126
DpnII	GATC	4 cut(s)	277, 415, 733, 1124
DraI	TTTAAA	1 cut(s)	174
EaeI	YGGCCR	2 cut(s)	846, 889
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Ecl136II	GAGCTC	1 cut(s)	830
Eco24I	GRGCYC	1 cut(s)	832
Eco47I	GGWCC	2 cut(s)	634, 1087
Eco53kI	GAGCTC	1 cut(s)	830
Eco57I	CTGAAG	2 cut(s)	296, 848
EcoICRI	GAGCTC	1 cut(s)	830
EcoO109I	RGGNCCY	2 cut(s)	634, 1087
EcoRI	GAATTC	1 cut(s)	650
EcoT22I	ATGCAT	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	832
FaeI	CATG	2 cut(s)	709, 755
FaqI	GGGAC	4 cut(s)	283, 620, 740, 1073
FatI	CATG	2 cut(s)	705, 751
FauI	CCCGC	1 cut(s)	971
FauNDI	CATATG	1 cut(s)	640
FblI	GTMKAC	1 cut(s)	801
Fnu4HI	GCNGC	3 cut(s)	877, 905, 1004
FokI	GGATG	5 cut(s)	702, 809, 946, 1020, 1051
FriOI	GRGCYC	1 cut(s)	832
Fsp4HI	GCNGC	3 cut(s)	877, 905, 1004
FspBI	CTAG	8 cut(s)	197, 593, 836, 935, 944, 984, 993, 1083
FspI	TGCGCA	1 cut(s)	1007
GlaI	GCGC	2 cut(s)	916, 1007
GluI	GCNGC	3 cut(s)	877, 905, 1004
HaeIII	GGCC	3 cut(s)	848, 891, 1028
HapII	CCGG	1 cut(s)	888
HgaI	GACGC	1 cut(s)	1107
HhaI	GCGC	2 cut(s)	917, 1008
Hin1II	CATG	2 cut(s)	709, 755
Hin6I	GCGC	2 cut(s)	915, 1006
HinP1I	GCGC	2 cut(s)	915, 1006
HindIII	AAGCTT	2 cut(s)	487, 599
HinfI	GANTC	5 cut(s)	10, 148, 500, 744, 1109
HpaII	CCGG	1 cut(s)	888
Hpy166II	GTNNAC	1 cut(s)	802
Hpy188I	TCNGA	5 cut(s)	282, 383, 867, 922, 973
Hpy188III	TCNNGA	6 cut(s)	110, 458, 504, 593, 719, 757
Hpy8I	GTNNAC	1 cut(s)	802
Hpy99I	CGWCG	1 cut(s)	1101
HpyAV	CCTTC	6 cut(s)	242, 256, 260, 403, 625, 850
HpyCH4III	ACNGT	4 cut(s)	321, 387, 763, 1045
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	5 cut(s)	19, 55, 168, 493, 1052
HpyF10VI	GCNNNNNNNGC	9 cut(s)	128, 836, 845, 901, 940, 944, 984, 989, 993
HpyF3I	CTNAG	1 cut(s)	281
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	2 cut(s)	709, 755
HspAI	GCGC	2 cut(s)	915, 1006
KflI	GGGWCCC	1 cut(s)	1087
Kzo9I	GATC	4 cut(s)	277, 415, 733, 1124
LmnI	GCTCC	3 cut(s)	304, 578, 827
Lsp1109I	GCAGC	3 cut(s)	888, 916, 990
LweI	GCATC	1 cut(s)	861
MaeI	CTAG	8 cut(s)	197, 593, 836, 935, 944, 984, 993, 1083
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	2 cut(s)	525, 745
MalI	GATC	4 cut(s)	279, 417, 735, 1126
MboI	GATC	4 cut(s)	277, 415, 733, 1124
MfeI	CAATTG	2 cut(s)	273, 557
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	2 cut(s)	301, 832
MlyI	GAGTC	5 cut(s)	19, 142, 509, 753, 1103
MmeI	TCCRAC	2 cut(s)	634, 996
Mph1103I	ATGCAT	1 cut(s)	170
MroXI	GAANNNNTTC	2 cut(s)	552, 861
MseI	TTAA	8 cut(s)	26, 44, 125, 173, 656, 666, 701, 1135
MslI	CAYNNNNRTG	2 cut(s)	720, 1013
MspI	CCGG	1 cut(s)	888
MunI	CAATTG	2 cut(s)	273, 557
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	9 cut(s)	128, 836, 845, 901, 940, 944, 984, 989, 993
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	4 cut(s)	277, 415, 733, 1124
NheI	GCTAGC	4 cut(s)	934, 943, 983, 992
NlaIII	CATG	2 cut(s)	709, 755
NlaIV	GGNNCC	5 cut(s)	417, 636, 1029, 1088, 1089
NmeAIII	GCCGAG	2 cut(s)	824, 1099
NmuCI	GTSAC	1 cut(s)	745
NsbI	TGCGCA	1 cut(s)	1007
NsiI	ATGCAT	1 cut(s)	170
OliI	CACNNNNGTG	1 cut(s)	1013
PdmI	GAANNNNTTC	2 cut(s)	552, 861
PflMI	CCANNNNNTGG	1 cut(s)	725
PkrI	GCNGC	3 cut(s)	878, 906, 1005
PleI	GAGTC	5 cut(s)	18, 142, 508, 752, 1103
PpsI	GAGTC	5 cut(s)	18, 142, 508, 752, 1103
PpuMI	RGGWCCY	2 cut(s)	634, 1087
PshBI	ATTAAT	1 cut(s)	701
Psp124BI	GAGCTC	1 cut(s)	832
Psp1406I	AACGTT	1 cut(s)	436
Psp5II	RGGWCCY	2 cut(s)	634, 1087
PspN4I	GGNNCC	5 cut(s)	417, 636, 1029, 1088, 1089
PspPI	GGNCC	3 cut(s)	634, 1027, 1087
PspPPI	RGGWCCY	2 cut(s)	634, 1087
PstNI	CAGNNNCTG	2 cut(s)	319, 1049
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	2 cut(s)	323, 453
RsaNI	GTAC	2 cut(s)	322, 452
RseI	CAYNNNNRTG	2 cut(s)	720, 1013
SacI	GAGCTC	1 cut(s)	832
SaqAI	TTAA	8 cut(s)	26, 44, 125, 173, 656, 666, 701, 1135
SatI	GCNGC	3 cut(s)	877, 905, 1004
Sau3AI	GATC	4 cut(s)	277, 415, 733, 1124
Sau96I	GGNCC	3 cut(s)	634, 1027, 1087
SchI	GAGTC	5 cut(s)	19, 142, 509, 753, 1103
SduI	GDGCHC	2 cut(s)	301, 832
SfaNI	GCATC	1 cut(s)	861
SinI	GGWCC	2 cut(s)	634, 1087
SmiMI	CAYNNNNRTG	2 cut(s)	720, 1013
SsiI	CCGC	2 cut(s)	789, 964
SspMI	CTAG	8 cut(s)	197, 593, 836, 935, 944, 984, 993, 1083
SstI	GAGCTC	1 cut(s)	832
TaaI	ACNGT	4 cut(s)	321, 387, 763, 1045
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	3 cut(s)	684, 855, 1096
TatI	WGTACW	1 cut(s)	321
Tru1I	TTAA	8 cut(s)	26, 44, 125, 173, 656, 666, 701, 1135
Tru9I	TTAA	8 cut(s)	26, 44, 125, 173, 656, 666, 701, 1135
TscAI	CASTG	4 cut(s)	359, 1050, 1075, 1111
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	3 cut(s)	876, 904, 1003
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	3 cut(s)	17, 239, 711
TspRI	CASTG	4 cut(s)	359, 1050, 1075, 1111
Van91I	CCANNNNNTGG	1 cut(s)	725
VpaK11BI	GGWCC	2 cut(s)	634, 1087
VspI	ATTAAT	1 cut(s)	701
XapI	RAATTY	4 cut(s)	305, 445, 650, 677
XbaI	TCTAGA	1 cut(s)	592
XmiI	GTMKAC	1 cut(s)	801
XmnI	GAANNNNTTC	2 cut(s)	552, 861
XspI	CTAG	8 cut(s)	197, 593, 836, 935, 944, 984, 993, 1083
Zsp2I	ATGCAT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.