Rh7DG275200

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
29594917 .. 29598197
3281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG275200.1

Sequence Viewer

Length: 2844 bp
ATGGCAGAAAGTGCAGTCACCTTTTTGGTTGATAGGCTCACGACATTACTAGAAGAAGAGGTGAAACTATTGTCAGGGATCCGAGAACAGGTCGAGGACTTGGTTGATGAATTGGAGCGCATCAAAGCCTTCTTAGCTGATGCAAAGGAAGACAGCAATCCTCAGCTCCAAGTGCGGGTTAAACAAGTCAGAGATGTAGCTCATGAAATGGAAGATGCCATTGATAAATTCAGGCTTTTCCATTCACACGATCACGGTCATGGATTCCGAGCTTCCCTTCATAAGCTTTCTTGTATCATCAAGAAATGGAAAGCTAAGCATCAAATTTCTGCTGGTATTCAAAGAATGAACTCAAAAGTCAAAAACCTCTACGAGGGACATGAGAGATACAAACTTGTTGACCAAGCTGCCTCCAGCTCTGCTCGTCTGGTTCAGCGCAACAAGTTAGATCGAGGGGATGCCCTTTTACTGGAAGAGGCTGATCTTGTGGCAATTGGCGAGCGCAAAAAGCAACTGATTGAATTGCTTATGAAGGAAGACACTAGACGCCAGGTGGTTCCAGTAGTTGGGATGGGTGGACTGGGGAAAACTACCTTGGTCAAGCAAGTCTACGAGGATCCAAAAGTTCAGAAACGTTTCAAGGTACATGCTTGGATCACTGTTTCTCGATCATTCAAGACAAGTCAGCTCCTAAGACACATGATCAATAATATCTTCAAAGTTATCCAGAAACCGGTTCCTGAAGATGAAGAAGTTGAAACCATGGACGACAACCAGCTAAGAGAGAGAATCAAAAATTTGCTGCAGAATAGTAGGTACCTGATTGTTCTTGATGGTATATGGCACATACCGGACTGGGATGCCATCAATCATGTAATGCCGAACAACAATCGTGGTAGTCGAGTAATGCTCACTACTCGATGTGTTAATGTAGCCTCTGCCTCTTGCTTGGGGAACCATGACATGTTCTACCGTTTAGAGCCCTTATCTCCGGAAGATTCATGGACTCTTTTCTGCAGGAAGACATTTCATGGAGAGTCATGCCCACCAAATTTGGAGGAAATTTGTCGATGCATACTGATGAAATGCGAGGGACTGCCCCTTGCAATTGTGGCCATCAGCGCTGTACTAGCTTTAAAAGACAAGAGAAATGTGGACGATTGGGCTGCTGTTTGTGGCAGTATTGGAGCTGAAATAGAAGGAAATGATCAACTTGACAACATGGAAAAATTGCTGTCTCTCAGTTACAGGGATTTACCATACCATCTGAAATCTTGCTTCTTGTATCTGAGCATCTTTCCTGATCCCTACAAAATTGAGCATATGAGATTAATTCGGTTATGGTTAGCTGAAGGATTTGTCTGTGGAAAAGAGGGAAGGACACCAGAAGAAGTTGCAGAGAGTTACCTCAGAGATTTATTGGATAGAAGTTTGATTCAAGCAGCAGAAACATCAACTGATGGGAGAGTTAAATCATATCGCATCCATGATATTTTACGGGAGATTGTCATTACGAAGTCTAGAGAGCAAAACTTTGCAGCAATAGCAAAAGAGCAAGGTACAAAGTGGCCTGAGAAAGTTCGAAGACTATCGATAGTTAACACGCTGCAGAATATACATCAAAAGAGGACAGCATCCCGACTTCGTTCTTTGCTCCTTTTTGGGATAGAAGAGTCACTTACTGATTTTCCCATACCAAAATTGTTTCCTACCGGTCTTCAGTTGCTTACTGTATTAGACTTAGAAGGTGCACATCTGGATATGTTTCCGAGTGAGGTTGTCAAGCTTATTCTTCTCAAATACCTTAGCTTGAGGCATACAAAGGTGAAACAAATTCCAAGCTCCATCAAGAAGCTACAAAACCTAGAGACCTTGGACCTTAAACACTCGCATGTTGTTGAATTACCTGCTGAGATTTTGAATCTCAAGCGACTTCGTCATCTCCTGGTTTATCGTTATGAGGTTGAGTCATATTTACGATTTAATGCCAGAAAAGGAGTTAAGATTCCGGCAGGGATAAGTAGCTTGCAATCGCTCCAAAAGCTCTGCTTTGTAGAGGCAAATCAATACAGTGGTGCTTTAATGGCAGAGCTTGGGAGAATGAAGCAACTAAGGAGGTTAGGCATTTATAAGTTGAGAGAAGAAGATGGGGCCACCTTATGCTCATCCGTCCAAAATATGACCAGCCTTCGCTCGTTGTCTGTATTTTCAGCAGGGAAACAGACGATAATTGATCTTAGCCACATTTCTAGTGCTCCTCCATTTCTTCAGCGACTATACTTGGCAGGGCGTTTAGAAAAGTTACCCCACTGGATCTCTTCTCTTCAAAACCTGGTCAGACTGTTTCTAAAATGGAGTCGGCTGAAGGAGGATCCTCTAGTACATCTTCAGAGTTTGCCAAACCTGGTACATCTTGAACTTTTACAAGTTTATGATGGAGAAAGCTTGCACTTTGAGGCAGGAGGGTTTCCAAGTCTGAAGTTATTAGGCATTGATAAATTGGATGAACTGCAATTGGTAACCATAGAGGAGGGAGCAATGCCTTGTCTAGAAAAGCTAATTATCCAGCGCTGCAAATGGTTGAAGAAGGTCCCGTCTGGCATTGAACATTTAACCAATTTAAAGCTGCTTGAGTTTTTCGATATGCCAGATGAATTAATCATGCCACTACATCCAGATGGTGGAGAAGATCACTGGAAAGTCGCTCATGTTCCAGCTGTTTATCATTCCTATTGGAGAGATGATGGGTGGGATGTCTACTCATTAGTCAATGAAGGAGAGAGTTTTAATTCGGGTACTTCGGCTGTGAGGAAGCTCTTTCGTAATATGTTATGGAAGGCATAG

Protein Analysis

947

Amino Acids

108.57

Weight (kDa)

8.48

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 85 2.5e-21 Rx N-terminal domain
NB-ARC PF00931 168 - 347 2.1e-43 NB-ARC domain
nSTAND6 PF25201 170 - 263 3.3e-06 Novel STAND NTPase 6
NACHT PF05729 185 - 344 7.7e-06 NACHT domain
WHD_DRP PF23559 432 - 503 6.7e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 548 - 877 1.2e-49 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000482)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica MD06G1024000.v1.1
prunus_persica Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis pycom16g25280
rosa_chinensis RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii Rroxscaffold_3G00246720
rosa_rugosa Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2130
Acc36I ACCTGC 1 cut(s) 1915
Acc65I GGTACC 1 cut(s) 816
AccB1I GGYRCC 1 cut(s) 816
AccB7I CCANNNNNTGG 2 cut(s) 566, 2681
AccI GTMKAC 2 cut(s) 609, 2757
AccIII TCCGGA 1 cut(s) 991
AciI CCGC 1 cut(s) 175
AclI AACGTT 1 cut(s) 634
AclWI GGATC 9 cut(s) 73, 86, 611, 624, 662, 1298, 2321, 2366, 2379
AcoI YGGCCR 1 cut(s) 1113
AcsI RAATTY 6 cut(s) 227, 324, 796, 1051, 1062, 1833
AcuI CTGAAG 7 cut(s) 762, 1371, 1703, 2252, 2372, 2384, 2498
AcyI GRCGYC 1 cut(s) 547
AfaI GTAC 7 cut(s) 645, 818, 1128, 1561, 2382, 2409, 2797
AfeI AGCGCT 2 cut(s) 1123, 2570
AfiI CCNNNNNNNGG 7 cut(s) 88, 175, 373, 469, 566, 733, 2681
AflIII ACRYGT 1 cut(s) 963
AgeI ACCGGT 2 cut(s) 733, 1712
AjnI CCWGG 4 cut(s) 549, 1944, 2331, 2403
AjuI GAANNNNNNNTTGG 2 cut(s) 578, 610
Alw21I GWGCWC 2 cut(s) 1753, 2257
Alw26I GTCTC 2 cut(s) 1242, 1862
Alw44I GTGCAC 1 cut(s) 1749
AlwI GGATC 9 cut(s) 73, 86, 611, 624, 662, 1298, 2321, 2366, 2379
Aor13HI TCCGGA 1 cut(s) 991
Aor51HI AGCGCT 2 cut(s) 1123, 2570
AoxI GGCC 3 cut(s) 1113, 1568, 2151
ApaLI GTGCAC 1 cut(s) 1749
ApeKI GCWGC 8 cut(s) 407, 802, 1166, 1442, 1538, 1606, 2571, 2626
ApoI RAATTY 6 cut(s) 227, 324, 796, 1051, 1062, 1833
AseI ATTAAT 2 cut(s) 1331, 2657
AsiGI ACCGGT 2 cut(s) 733, 1712
Asp700I GAANNNNTTC 1 cut(s) 635
Asp718I GGTACC 1 cut(s) 816
AspLEI GCGC 5 cut(s) 120, 438, 504, 1124, 2571
AspS9I GGNCC 3 cut(s) 1876, 2151, 2590
AsuHPI GGTGA 3 cut(s) 10, 73, 1837
AsuII TTCGAA 1 cut(s) 1582
AvaII GGWCC 2 cut(s) 1876, 2590
BaeGI GKGCMC 1 cut(s) 1753
BalI TGGCCA 1 cut(s) 1115
BamHI GGATCC 3 cut(s) 78, 616, 2371
BanI GGYRCC 1 cut(s) 816
BanII GRGCYC 1 cut(s) 984
BbsI GAAGAC 5 cut(s) 156, 543, 1028, 1591, 1709
Bbv12I GWGCWC 2 cut(s) 1753, 2257
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 8 cut(s) 394, 789, 1153, 1454, 1550, 1593, 2558, 2613
BcgI CGANNNNNNTGC 2 cut(s) 1148, 1182
BciT130I CCWGG 4 cut(s) 551, 1946, 2333, 2405
BclI TGATCA 2 cut(s) 702, 1207
BcoDI GTCTC 2 cut(s) 1242, 1862
BfaI CTAG 8 cut(s) 50, 543, 1130, 1521, 1865, 2250, 2378, 2549
BfmI CTRYAG 3 cut(s) 803, 1015, 1607
BfoI RGCGCY 2 cut(s) 1125, 2572
BfuAI ACCTGC 1 cut(s) 1915
BisI GCNGC 8 cut(s) 408, 803, 1167, 1443, 1539, 1607, 2572, 2627
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 8 cut(s) 409, 804, 1168, 1444, 1540, 1608, 2573, 2628
Bme1390I CCNGG 4 cut(s) 551, 1946, 2333, 2405
Bme18I GGWCC 2 cut(s) 1876, 2590
BmgT120I GGNCC 3 cut(s) 1876, 2151, 2590
BmiI GGNNCC 9 cut(s) 80, 558, 618, 738, 818, 956, 2152, 2373, 2592
BmrFI CCNGG 4 cut(s) 551, 1946, 2333, 2405
BmrI ACTGGG 2 cut(s) 590, 865
BmuI ACTGGG 2 cut(s) 590, 865
BpiI GAAGAC 5 cut(s) 156, 543, 1028, 1591, 1709
BplI GAGNNNNNCTC 2 cut(s) 894, 926
BpmI CTGGAG 1 cut(s) 397
Bpu10I CCTNAGC 2 cut(s) 162, 1805
Bpu1102I GCTNAGC 1 cut(s) 315
Bpu14I TTCGAA 1 cut(s) 1582
BpuEI CTTGAG 3 cut(s) 1831, 1910, 2651
Bsa29I ATCGAT 1 cut(s) 1592
BsaHI GRCGYC 1 cut(s) 547
BsaI GGTCTC 1 cut(s) 1862
BsaJI CCNNGG 3 cut(s) 594, 762, 1872
BsaWI WCCGGW 4 cut(s) 733, 850, 991, 1712
Bsc4I CCNNNNNNNGG 7 cut(s) 88, 175, 373, 469, 566, 733, 2681
Bse118I RCCGGY 2 cut(s) 733, 1712
Bse1I ACTGG 6 cut(s) 474, 560, 585, 860, 2315, 2699
Bse3DI GCAATG 1 cut(s) 2544
BseAI TCCGGA 1 cut(s) 991
BseBI CCWGG 4 cut(s) 551, 1946, 2333, 2405
BseCI ATCGAT 1 cut(s) 1592
BseDI CCNNGG 3 cut(s) 594, 762, 1872
BseGI GGATG 9 cut(s) 463, 576, 865, 1482, 1634, 2165, 2509, 2671, 2758
BseLI CCNNNNNNNGG 7 cut(s) 88, 175, 373, 469, 566, 733, 2681
BseMI GCAATG 1 cut(s) 2544
BseMII CTCAG 6 cut(s) 176, 1255, 1280, 1423, 1563, 1902
BseNI ACTGG 6 cut(s) 474, 560, 585, 860, 2315, 2699
BseRI GAGGAG 2 cut(s) 2247, 2543
BseSI GKGCMC 1 cut(s) 1753
BseXI GCAGC 8 cut(s) 394, 789, 1153, 1454, 1550, 1593, 2558, 2613
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 3 cut(s) 1115, 1570, 2153
BshNI GGYRCC 1 cut(s) 816
BshTI ACCGGT 2 cut(s) 733, 1712
BshVI ATCGAT 1 cut(s) 1592
BsiHKAI GWGCWC 2 cut(s) 1753, 2257
BsiSI CCGG 5 cut(s) 734, 851, 992, 1713, 2009
BslFI GGGAC 3 cut(s) 390, 1107, 2576
BslI CCNNNNNNNGG 7 cut(s) 88, 175, 373, 469, 566, 733, 2681
BsmAI GTCTC 2 cut(s) 1242, 1862
BsmFI GGGAC 3 cut(s) 390, 1107, 2576
BsnI GGCC 3 cut(s) 1115, 1570, 2153
Bso31I GGTCTC 1 cut(s) 1862
Bsp119I TTCGAA 1 cut(s) 1582
Bsp1286I GDGCHC 3 cut(s) 984, 1753, 2257
Bsp13I TCCGGA 1 cut(s) 991
Bsp1720I GCTNAGC 1 cut(s) 315
Bsp19I CCATGG 1 cut(s) 762
BspACI CCGC 1 cut(s) 175
BspANI GGCC 3 cut(s) 1115, 1570, 2153
BspCNI CTCAG 6 cut(s) 175, 1254, 1281, 1422, 1564, 1903
BspDI ATCGAT 1 cut(s) 1592
BspEI TCCGGA 1 cut(s) 991
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 9 cut(s) 80, 558, 618, 738, 818, 956, 2152, 2373, 2592
BspMAI CTGCAG 3 cut(s) 807, 1019, 1611
BspMI ACCTGC 1 cut(s) 1915
BspPI GGATC 9 cut(s) 73, 86, 611, 624, 662, 1298, 2321, 2366, 2379
BspT104I TTCGAA 1 cut(s) 1582
BspT107I GGYRCC 1 cut(s) 816
BspTNI GGTCTC 1 cut(s) 1862
BsrDI GCAATG 1 cut(s) 2544
BsrFI RCCGGY 2 cut(s) 733, 1712
BsrI ACTGG 6 cut(s) 474, 560, 585, 860, 2315, 2699
BssAI RCCGGY 2 cut(s) 733, 1712
BssECI CCNNGG 3 cut(s) 594, 762, 1872
BssNI GRCGYC 1 cut(s) 547
BssT1I CCWWGG 3 cut(s) 594, 762, 1872
Bst2UI CCWGG 4 cut(s) 551, 1946, 2333, 2405
Bst4CI ACNGT 6 cut(s) 257, 661, 974, 1732, 2072, 2343
Bst6I CTCTTC 5 cut(s) 51, 468, 1665, 2323, 2328
BstACI GRCGYC 1 cut(s) 547
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 1582
BstC8I GCNNGC 3 cut(s) 500, 2027, 2447
BstDSI CCRYGG 1 cut(s) 762
BstEII GGTNACC 1 cut(s) 2518
BstENI CCTNNNNNAGG 1 cut(s) 371
BstF5I GGATG 9 cut(s) 463, 576, 865, 1482, 1634, 2165, 2509, 2671, 2758
BstH2I RGCGCY 2 cut(s) 1125, 2572
BstHHI GCGC 5 cut(s) 120, 438, 504, 1124, 2571
BstMAI GTCTC 2 cut(s) 1242, 1862
BstNI CCWGG 4 cut(s) 551, 1946, 2333, 2405
BstNSI RCATGY 3 cut(s) 650, 967, 1895
BstPI GGTNACC 1 cut(s) 2518
BstSCI CCNGG 4 cut(s) 549, 1944, 2331, 2403
BstSFI CTRYAG 3 cut(s) 803, 1015, 1607
BstSLI GKGCMC 1 cut(s) 1753
BstV1I GCAGC 8 cut(s) 394, 789, 1153, 1454, 1550, 1593, 2558, 2613
BstV2I GAAGAC 5 cut(s) 156, 543, 1028, 1591, 1709
BstX2I RGATCY 4 cut(s) 78, 616, 2313, 2371
BstYI RGATCY 4 cut(s) 78, 616, 2313, 2371
Bsu15I ATCGAT 1 cut(s) 1592
BsuRI GGCC 3 cut(s) 1115, 1570, 2153
BsuTUI ATCGAT 1 cut(s) 1592
BtgI CCRYGG 1 cut(s) 762
BtsCI GGATG 9 cut(s) 463, 576, 865, 1482, 1634, 2165, 2509, 2671, 2758
BtsIMutI CAGTG 4 cut(s) 657, 2077, 2308, 2692
BveI ACCTGC 1 cut(s) 1915
Cac8I GCNNGC 3 cut(s) 500, 2027, 2447
CciI TCATGA 1 cut(s) 202
CfoI GCGC 5 cut(s) 120, 438, 504, 1124, 2571
Cfr10I RCCGGY 2 cut(s) 733, 1712
Cfr13I GGNCC 3 cut(s) 1876, 2151, 2590
ClaI ATCGAT 1 cut(s) 1592
CseI GACGC 1 cut(s) 555
CsiI ACCWGGT 2 cut(s) 2331, 2403
Csp6I GTAC 7 cut(s) 644, 817, 1127, 1560, 2381, 2408, 2796
CspAI ACCGGT 2 cut(s) 733, 1712
CspCI CAANNNNNGTGG 4 cut(s) 874, 909, 1035, 1070
CviQI GTAC 7 cut(s) 644, 817, 1127, 1560, 2381, 2408, 2796
DraI TTTAAA 2 cut(s) 1137, 2622
EaeI YGGCCR 1 cut(s) 1113
Eam1104I CTCTTC 5 cut(s) 51, 468, 1665, 2323, 2328
EarI CTCTTC 5 cut(s) 51, 468, 1665, 2323, 2328
Eco130I CCWWGG 3 cut(s) 594, 762, 1872
Eco24I GRGCYC 1 cut(s) 984
Eco31I GGTCTC 1 cut(s) 1862
Eco47I GGWCC 2 cut(s) 1876, 2590
Eco47III AGCGCT 2 cut(s) 1123, 2570
Eco57I CTGAAG 7 cut(s) 762, 1371, 1703, 2252, 2372, 2384, 2498
Eco91I GGTNACC 1 cut(s) 2518
EcoNI CCTNNNNNAGG 1 cut(s) 371
EcoO109I RGGNCCY 1 cut(s) 2590
EcoO65I GGTNACC 1 cut(s) 2518
EcoRII CCWGG 4 cut(s) 549, 1944, 2331, 2403
EcoT14I CCWWGG 3 cut(s) 594, 762, 1872
EcoT22I ATGCAT 1 cut(s) 1076
EcoT38I GRGCYC 1 cut(s) 984
ErhI CCWWGG 3 cut(s) 594, 762, 1872
FalI AAGNNNNNCTT 4 cut(s) 1662, 1694, 2033, 2065
FaqI GGGAC 3 cut(s) 390, 1107, 2576
FauI CCCGC 1 cut(s) 168
FauNDI CATATG 1 cut(s) 1323
FbaI TGATCA 2 cut(s) 702, 1207
FblI GTMKAC 2 cut(s) 609, 2757
Fnu4HI GCNGC 8 cut(s) 408, 803, 1167, 1443, 1539, 1607, 2572, 2627
FokI GGATG 9 cut(s) 470, 583, 872, 1469, 1621, 2152, 2516, 2658, 2765
FriOI GRGCYC 1 cut(s) 984
Fsp4HI GCNGC 8 cut(s) 408, 803, 1167, 1443, 1539, 1607, 2572, 2627
FspBI CTAG 8 cut(s) 50, 543, 1130, 1521, 1865, 2250, 2378, 2549
GlaI GCGC 5 cut(s) 119, 437, 503, 1123, 2570
GluI GCNGC 8 cut(s) 408, 803, 1167, 1443, 1539, 1607, 2572, 2627
GsuI CTGGAG 1 cut(s) 397
HaeII RGCGCY 2 cut(s) 1125, 2572
HaeIII GGCC 3 cut(s) 1115, 1570, 2153
HapII CCGG 5 cut(s) 734, 851, 992, 1713, 2009
HgaI GACGC 1 cut(s) 555
HhaI GCGC 5 cut(s) 120, 438, 504, 1124, 2571
Hin1I GRCGYC 1 cut(s) 547
Hin6I GCGC 5 cut(s) 118, 436, 502, 1122, 2569
HinP1I GCGC 5 cut(s) 118, 436, 502, 1122, 2569
HincII GTYRAC 2 cut(s) 400, 1600
HindII GTYRAC 2 cut(s) 400, 1600
HindIII AAGCTT 3 cut(s) 284, 1784, 2443
HpaI GTTAAC 1 cut(s) 1600
HpaII CCGG 5 cut(s) 734, 851, 992, 1713, 2009
HphI GGTGA 3 cut(s) 10, 73, 1837
Hpy166II GTNNAC 7 cut(s) 400, 578, 610, 1156, 1600, 1751, 2758
Hpy8I GTNNAC 7 cut(s) 400, 578, 610, 1156, 1600, 1751, 2758
HpyCH4III ACNGT 6 cut(s) 257, 661, 974, 1732, 2072, 2343
HpyCH4IV ACGT 1 cut(s) 634
HpySE526I ACGT 1 cut(s) 634
Hsp92I GRCGYC 1 cut(s) 547
HspAI GCGC 5 cut(s) 118, 436, 502, 1122, 2569
Kpn2I TCCGGA 1 cut(s) 991
KpnI GGTACC 1 cut(s) 820
Ksp22I TGATCA 2 cut(s) 702, 1207
KspAI GTTAAC 1 cut(s) 1600
LmnI GCTCC 9 cut(s) 115, 171, 693, 1187, 1659, 1847, 2040, 2260, 2534
Lsp1109I GCAGC 8 cut(s) 394, 789, 1153, 1454, 1550, 1593, 2558, 2613
MabI ACCWGGT 2 cut(s) 2331, 2403
MaeI CTAG 8 cut(s) 50, 543, 1130, 1521, 1865, 2250, 2378, 2549
MaeII ACGT 1 cut(s) 634
MaeIII GTNAC 6 cut(s) 16, 1244, 1403, 1674, 2301, 2518
MfeI CAATTG 3 cut(s) 492, 1107, 2513
MflI RGATCY 4 cut(s) 78, 616, 2313, 2371
MhlI GDGCHC 3 cut(s) 984, 1753, 2257
MlsI TGGCCA 1 cut(s) 1115
MluNI TGGCCA 1 cut(s) 1115
MlyI GAGTC 5 cut(s) 1000, 1046, 1682, 1976, 2365
Mph1103I ATGCAT 1 cut(s) 1076
MroI TCCGGA 1 cut(s) 991
MroXI GAANNNNTTC 1 cut(s) 635
MscI TGGCCA 1 cut(s) 1115
MslI CAYNNNNRTG 4 cut(s) 258, 1079, 1890, 2676
Msp20I TGGCCA 1 cut(s) 1115
MspA1I CMGCKG 1 cut(s) 2717
MspI CCGG 5 cut(s) 734, 851, 992, 1713, 2009
MspR9I CCNGG 4 cut(s) 551, 1946, 2333, 2405
MunI CAATTG 3 cut(s) 492, 1107, 2513
MvaI CCWGG 4 cut(s) 551, 1946, 2333, 2405
NcoI CCATGG 1 cut(s) 762
NdeI CATATG 1 cut(s) 1323
NlaIV GGNNCC 9 cut(s) 80, 558, 618, 738, 818, 956, 2152, 2373, 2592
NmuCI GTSAC 2 cut(s) 16, 1674
NsiI ATGCAT 1 cut(s) 1076
NspI RCATGY 3 cut(s) 650, 967, 1895
NspV TTCGAA 1 cut(s) 1582
PagI TCATGA 1 cut(s) 202
PciI ACATGT 1 cut(s) 963
PcsI WCGNNNNNNNCGW 1 cut(s) 898
PdmI GAANNNNTTC 1 cut(s) 635
PfeI GAWTC 6 cut(s) 264, 789, 998, 1435, 1921, 2005
PflFI GACNNNGTC 1 cut(s) 1935
PflMI CCANNNNNTGG 2 cut(s) 566, 2681
PinAI ACCGGT 2 cut(s) 733, 1712
PkrI GCNGC 8 cut(s) 409, 804, 1168, 1444, 1540, 1608, 2573, 2628
PleI GAGTC 5 cut(s) 1000, 1045, 1681, 1975, 2364
PpsI GAGTC 5 cut(s) 1000, 1045, 1681, 1975, 2364
PpuMI RGGWCCY 1 cut(s) 2590
PscI ACATGT 1 cut(s) 963
PshBI ATTAAT 2 cut(s) 1331, 2657
PsiI TTATAA 1 cut(s) 2130
Psp1406I AACGTT 1 cut(s) 634
Psp5II RGGWCCY 1 cut(s) 2590
Psp6I CCWGG 4 cut(s) 549, 1944, 2331, 2403
PspEI GGTNACC 1 cut(s) 2518
PspGI CCWGG 4 cut(s) 549, 1944, 2331, 2403
PspN4I GGNNCC 9 cut(s) 80, 558, 618, 738, 818, 956, 2152, 2373, 2592
PspPI GGNCC 3 cut(s) 1876, 2151, 2590
PspPPI RGGWCCY 1 cut(s) 2590
PstI CTGCAG 3 cut(s) 807, 1019, 1611
PsuI RGATCY 4 cut(s) 78, 616, 2313, 2371
PsyI GACNNNGTC 1 cut(s) 1935
PvuII CAGCTG 1 cut(s) 2717
RsaI GTAC 7 cut(s) 645, 818, 1128, 1561, 2382, 2409, 2797
RsaNI GTAC 7 cut(s) 644, 817, 1127, 1560, 2381, 2408, 2796
RseI CAYNNNNRTG 4 cut(s) 258, 1079, 1890, 2676
SatI GCNGC 8 cut(s) 408, 803, 1167, 1443, 1539, 1607, 2572, 2627
Sau96I GGNCC 3 cut(s) 1876, 2151, 2590
SchI GAGTC 5 cut(s) 1000, 1046, 1682, 1976, 2365
ScrFI CCNGG 4 cut(s) 551, 1946, 2333, 2405
SduI GDGCHC 3 cut(s) 984, 1753, 2257
SexAI ACCWGGT 2 cut(s) 2331, 2403
SfcI CTRYAG 3 cut(s) 803, 1015, 1607
SfuI TTCGAA 1 cut(s) 1582
SinI GGWCC 2 cut(s) 1876, 2590
SmiMI CAYNNNNRTG 4 cut(s) 258, 1079, 1890, 2676
SmlI CTYRAG 3 cut(s) 1810, 1925, 2630
SmoI CTYRAG 3 cut(s) 1810, 1925, 2630
SsiI CCGC 1 cut(s) 175
SspMI CTAG 8 cut(s) 50, 543, 1130, 1521, 1865, 2250, 2378, 2549
StyD4I CCNGG 4 cut(s) 549, 1944, 2331, 2403
StyI CCWWGG 3 cut(s) 594, 762, 1872
TaaI ACNGT 6 cut(s) 257, 661, 974, 1732, 2072, 2343
TaiI ACGT 1 cut(s) 637
TaqI TCGA 9 cut(s) 93, 451, 667, 901, 919, 1069, 1582, 1592, 2640
TatI WGTACW 2 cut(s) 1126, 2380
TfiI GAWTC 6 cut(s) 264, 789, 998, 1435, 1921, 2005
TscAI CASTG 4 cut(s) 664, 2077, 2315, 2699
TseFI GTSAC 2 cut(s) 16, 1674
TseI GCWGC 8 cut(s) 407, 802, 1166, 1442, 1538, 1606, 2571, 2626
Tsp45I GTSAC 2 cut(s) 16, 1674
TspGWI ACGGA 1 cut(s) 2158
TspRI CASTG 4 cut(s) 664, 2077, 2315, 2699
Tth111I GACNNNGTC 1 cut(s) 1935
Van91I CCANNNNNTGG 2 cut(s) 566, 2681
VneI GTGCAC 1 cut(s) 1749
VpaK11BI GGWCC 2 cut(s) 1876, 2590
VspI ATTAAT 2 cut(s) 1331, 2657
XagI CCTNNNNNAGG 1 cut(s) 371
XapI RAATTY 6 cut(s) 227, 324, 796, 1051, 1062, 1833
XbaI TCTAGA 2 cut(s) 1520, 2548
XceI RCATGY 3 cut(s) 650, 967, 1895
XmiI GTMKAC 2 cut(s) 609, 2757
XmnI GAANNNNTTC 1 cut(s) 635
XspI CTAG 8 cut(s) 50, 543, 1130, 1521, 1865, 2250, 2378, 2549
Zsp2I ATGCAT 1 cut(s) 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.