Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011082.1

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 614

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011082.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 613 bp

atgaccagccttcgctcgttgtctgtattttcagcagggaaacagacgataattgatcttagccacatttctcgtgctcctccatttcttcagcgactatacttggcagggcgtttagaaaacttaccccactggatctcttctcttcaaaacctggtcagactgtttctaaaatggagtcggctgaaggaggatcctctagtacatcttcagagtttgccaaacctggtacatcttgaacttttacaagtttatgatggagaaagcttgcactttgaggcaggagggtttccaagtctgaagttattaggtattgataaattggatgaactacaatcggtaaccatagaggagggagcaatgccttctctagaaaagctaattatccagcgctgcaaatgcttgaagaaggtcccatctggcattgaacatttaaccaatttaaagctgcttgagtttttcgatatgccagatgaattaatcatgccactacatccagatggtggagaagatcactggaaagtcgctcatgttccagctgtttatcattcctattggagagatgatgggtgggatgtctactcattagtcaatgaaggggagagttttaatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

204

Amino Acids

23.32

Weight (kDa)

5.64

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	503
AccI	GTMKAC	1 cut(s)	579
AclWI	GGATC	3 cut(s)	143, 188, 201
AcuI	CTGAAG	4 cut(s)	74, 194, 206, 320
AfaI	GTAC	2 cut(s)	204, 231
AfeI	AGCGCT	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	503
AgsI	TTSAA	4 cut(s)	149, 239, 406, 428
AjnI	CCWGG	2 cut(s)	153, 225
AluBI	AGCT	4 cut(s)	267, 379, 448, 539
AluI	AGCT	4 cut(s)	267, 379, 448, 539
Alw21I	GWGCWC	1 cut(s)	79
AlwI	GGATC	3 cut(s)	143, 188, 201
Aor51HI	AGCGCT	1 cut(s)	392
ApeKI	GCWGC	2 cut(s)	393, 448
AseI	ATTAAT	1 cut(s)	479
AspLEI	GCGC	1 cut(s)	393
AspS9I	GGNCC	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	412
BamHI	GGATCC	1 cut(s)	193
BauI	CACGAG	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	380, 435
BccI	CCATC	4 cut(s)	251, 424, 494, 560
BciT130I	CCWGG	2 cut(s)	155, 227
BfaI	CTAG	2 cut(s)	200, 371
BfoI	RGCGCY	1 cut(s)	394
BisI	GCNGC	2 cut(s)	394, 449
BlsI	GCNGC	2 cut(s)	395, 450
Bme1390I	CCNGG	2 cut(s)	155, 227
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	2 cut(s)	195, 414
BmrFI	CCNGG	2 cut(s)	155, 227
BpuEI	CTTGAG	1 cut(s)	473
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse1I	ACTGG	2 cut(s)	137, 521
Bse3DI	GCAATG	1 cut(s)	366
BseBI	CCWGG	2 cut(s)	155, 227
BseGI	GGATG	3 cut(s)	331, 493, 580
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMI	GCAATG	1 cut(s)	366
BseNI	ACTGG	2 cut(s)	137, 521
BseRI	GAGGAG	2 cut(s)	69, 365
BseXI	GCAGC	2 cut(s)	380, 435
BsiHKAI	GWGCWC	1 cut(s)	79
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmFI	GGGAC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	4 cut(s)	55, 135, 193, 511
BspLI	GGNNCC	2 cut(s)	195, 414
BspPI	GGATC	3 cut(s)	143, 188, 201
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	2 cut(s)	137, 521
BssMI	GATC	4 cut(s)	55, 135, 193, 511
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	155, 227
Bst4CI	ACNGT	1 cut(s)	165
Bst6I	CTCTTC	2 cut(s)	145, 150
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	59
BstEII	GGTNACC	1 cut(s)	340
BstF5I	GGATG	3 cut(s)	331, 493, 580
BstH2I	RGCGCY	1 cut(s)	394
BstHHI	GCGC	1 cut(s)	393
BstKTI	GATC	4 cut(s)	58, 138, 196, 514
BstMBI	GATC	4 cut(s)	55, 135, 193, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	399
BstNI	CCWGG	2 cut(s)	155, 227
BstPI	GGTNACC	1 cut(s)	340
BstSCI	CCNGG	2 cut(s)	153, 225
BstV1I	GCAGC	2 cut(s)	380, 435
BstX2I	RGATCY	2 cut(s)	135, 193
BstYI	RGATCY	2 cut(s)	135, 193
BtsCI	GGATG	3 cut(s)	331, 493, 580
BtsIMutI	CAGTG	2 cut(s)	130, 514
Cac8I	GCNNGC	1 cut(s)	269
CfoI	GCGC	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	412
CsiI	ACCWGGT	2 cut(s)	153, 225
Csp6I	GTAC	2 cut(s)	203, 230
CviAII	CATG	2 cut(s)	484, 530
CviJI	RGCY	7 cut(s)	9, 63, 184, 267, 379, 448, 539
CviKI_1	RGCY	7 cut(s)	9, 63, 184, 267, 379, 448, 539
CviQI	GTAC	2 cut(s)	203, 230
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	4 cut(s)	57, 137, 195, 513
DpnII	GATC	4 cut(s)	55, 135, 193, 511
DraI	TTTAAA	1 cut(s)	444
Eam1104I	CTCTTC	2 cut(s)	145, 150
EarI	CTCTTC	2 cut(s)	145, 150
Eco47I	GGWCC	1 cut(s)	412
Eco47III	AGCGCT	1 cut(s)	392
Eco57I	CTGAAG	4 cut(s)	74, 194, 206, 320
Eco91I	GGTNACC	1 cut(s)	340
EcoO109I	RGGNCCY	1 cut(s)	412
EcoO65I	GGTNACC	1 cut(s)	340
EcoRII	CCWGG	2 cut(s)	153, 225
FaeI	CATG	2 cut(s)	487, 533
FaiI	YATR	6 cut(s)	100, 255, 347, 467, 485, 531
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	2 cut(s)	483, 529
FblI	GTMKAC	1 cut(s)	579
Fnu4HI	GCNGC	2 cut(s)	394, 449
FokI	GGATG	3 cut(s)	338, 480, 587
Fsp4HI	GCNGC	2 cut(s)	394, 449
FspBI	CTAG	2 cut(s)	200, 371
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	2 cut(s)	394, 449
HaeII	RGCGCY	1 cut(s)	394
HhaI	GCGC	1 cut(s)	393
Hin1II	CATG	2 cut(s)	487, 533
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HindIII	AAGCTT	1 cut(s)	265
HinfI	GANTC	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188I	TCNGA	3 cut(s)	161, 213, 300
Hpy188III	TCNNGA	3 cut(s)	236, 371, 497
Hpy8I	GTNNAC	1 cut(s)	580
HpyAV	CCTTC	5 cut(s)	20, 181, 375, 403, 590
HpyCH4III	ACNGT	1 cut(s)	165
HpyCH4V	TGCA	2 cut(s)	271, 396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	399
HpyF3I	CTNAG	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	487, 533
HspAI	GCGC	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	55, 135, 193, 511
LmnI	GCTCC	2 cut(s)	82, 356
Lsp1109I	GCAGC	2 cut(s)	380, 435
MabI	ACCWGGT	2 cut(s)	153, 225
MaeI	CTAG	2 cut(s)	200, 371
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	4 cut(s)	57, 137, 195, 513
MboI	GATC	4 cut(s)	55, 135, 193, 511
MboII	GAAGA	6 cut(s)	80, 132, 137, 200, 418, 521
MflI	RGATCY	2 cut(s)	135, 193
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	5 cut(s)	51, 320, 381, 439, 476
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	7 cut(s)	90, 184, 207, 271, 278, 343, 346
MseI	TTAA	4 cut(s)	434, 443, 479, 609
MslI	CAYNNNNRTG	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	539
MspR9I	CCNGG	2 cut(s)	155, 227
MvaI	CCWGG	2 cut(s)	155, 227
MwoI	GCNNNNNNNGC	1 cut(s)	399
NdeII	GATC	4 cut(s)	55, 135, 193, 511
NlaIII	CATG	2 cut(s)	487, 533
NlaIV	GGNNCC	2 cut(s)	195, 414
PflMI	CCANNNNNTGG	1 cut(s)	503
PkrI	GCNGC	2 cut(s)	395, 450
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
PpuMI	RGGWCCY	1 cut(s)	412
PshBI	ATTAAT	1 cut(s)	479
Psp5II	RGGWCCY	1 cut(s)	412
Psp6I	CCWGG	2 cut(s)	153, 225
PspEI	GGTNACC	1 cut(s)	340
PspGI	CCWGG	2 cut(s)	153, 225
PspN4I	GGNNCC	2 cut(s)	195, 414
PspPI	GGNCC	1 cut(s)	412
PspPPI	RGGWCCY	1 cut(s)	412
PsuI	RGATCY	2 cut(s)	135, 193
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	2 cut(s)	204, 231
RsaNI	GTAC	2 cut(s)	203, 230
RseI	CAYNNNNRTG	1 cut(s)	498
SaqAI	TTAA	4 cut(s)	434, 443, 479, 609
SatI	GCNGC	2 cut(s)	394, 449
Sau3AI	GATC	4 cut(s)	55, 135, 193, 511
Sau96I	GGNCC	1 cut(s)	412
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	2 cut(s)	155, 227
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	8 cut(s)	156, 228, 269, 313, 381, 414, 450, 541
SexAI	ACCWGGT	2 cut(s)	153, 225
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	5 cut(s)	51, 320, 381, 439, 476
SspMI	CTAG	2 cut(s)	200, 371
StyD4I	CCNGG	2 cut(s)	153, 225
TaaI	ACNGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	462
TasI	AATT	5 cut(s)	51, 320, 381, 439, 476
TatI	WGTACW	1 cut(s)	202
Tru1I	TTAA	4 cut(s)	434, 443, 479, 609
Tru9I	TTAA	4 cut(s)	434, 443, 479, 609
TscAI	CASTG	2 cut(s)	137, 521
TseI	GCWGC	2 cut(s)	393, 448
TspDTI	ATGAA	3 cut(s)	342, 489, 609
TspRI	CASTG	2 cut(s)	137, 521
Van91I	CCANNNNNTGG	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	412
VspI	ATTAAT	1 cut(s)	479
XbaI	TCTAGA	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	579
XspI	CTAG	2 cut(s)	200, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.