Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Reverse (-)

28937436 .. 28937744

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG284700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGACCAGGGAGCAGTGCCTCATCCAGAGAAGCTGATTATCCAACGGTGCGAGTTGTTGAAGGTTCCATATGGAATTGAACATTTAACCAACTTAAAGTTGCTTGAATTTTTCGATGTGCCAGTTGAAGTAGTCACGCCTCTATATCCAGATGGAAAAGATCATTGGAAAGTCGTTCATGTCCCAGAAGTCTATTATTCCTATCAGAGAGGTGGCGACTGGAATGTCTGTTCATTAGTCAATGAAGGGTTTAATTCGCGTACTTCTGCCACGAGAAGGCTTGAACGAAATACTGTATGGAAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

102

Amino Acids

11.87

Weight (kDa)

6.4

Isoelectric Point (pI)

25.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AccII	CGCG	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	107
AfaI	GTAC	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	5 cut(s)	61, 80, 107, 128, 284
AjnI	CCWGG	1 cut(s)	6
AjuI	GAANNNNNNNTTGG	2 cut(s)	148, 180
AloI	GAACNNNNNNTCC	2 cut(s)	214, 246
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
ApoI	RAATTY	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	271
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	8
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	2 cut(s)	122, 224
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	7
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseNI	ACTGG	2 cut(s)	122, 224
Bsh1236I	CGCG	1 cut(s)	259
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	122, 224
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	1 cut(s)	160
BssSI	CACGAG	1 cut(s)	271
Bst2BI	CACGAG	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	48, 295
BstF5I	GGATG	1 cut(s)	22
BstFNI	CGCG	1 cut(s)	259
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	2 cut(s)	34, 280
CviKI_1	RGCY	2 cut(s)	34, 280
CviQI	GTAC	1 cut(s)	261
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	6
FaeI	CATG	1 cut(s)	182
FaiI	YATR	5 cut(s)	70, 72, 145, 180, 298
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	1 cut(s)	178
FauNDI	CATATG	1 cut(s)	70
FokI	GGATG	1 cut(s)	9
Hin1II	CATG	1 cut(s)	182
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	2 cut(s)	26, 149
HpyAV	CCTTC	4 cut(s)	55, 239, 270, 295
HpyCH4III	ACNGT	2 cut(s)	48, 295
Hsp92II	CATG	1 cut(s)	182
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	6 cut(s)	20, 39, 135, 162, 198, 205
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MluCI	AATT	3 cut(s)	75, 107, 253
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	3 cut(s)	30, 150, 203
MseI	TTAA	3 cut(s)	86, 95, 252
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
MvnI	CGCG	1 cut(s)	259
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SaqAI	TTAA	3 cut(s)	86, 95, 252
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	8
SetI	ASST	4 cut(s)	36, 66, 214, 306
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	3 cut(s)	75, 107, 253
StyD4I	CCNGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	48, 295
TaqI	TCGA	1 cut(s)	114
TasI	AATT	3 cut(s)	75, 107, 253
Tru1I	TTAA	3 cut(s)	86, 95, 252
Tru9I	TTAA	3 cut(s)	86, 95, 252
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	3 cut(s)	167, 222, 258
TspRI	CASTG	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.