Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005770.1

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Forward (+)

44762 .. 47596

Gene Structure 2835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005770.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggctgaaagtgtagtaacatttttagttttcaagcttaagacgttactcgaagaagaggtgaaactattgtcagggatccaagtacaggtccaggaagtggttgatgaattagaacgcatccaggcgttcttaagggttgctgatgcaaaggaagacagcgatcctcagctgaaagtgtgggttgatcaagtcagagatgtggctcatgagatggaagatgcccttgataaattcaggcattcctattcacatgatcacgccttcagggccggcgggcctccatcggcccacttgatccgcgggctttttgatgaggccaaagacatcaacctgcagaaaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

115

Amino Acids

13.13

Weight (kDa)

5.01

Isoelectric Point (pI)

23.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	342
AccB7I	CCANNNNNTGG	1 cut(s)	100
AccII	CGCG	1 cut(s)	303
AciI	CCGC	3 cut(s)	276, 301, 303
AclWI	GGATC	4 cut(s)	73, 86, 158, 292
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	250
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	2 cut(s)	88, 100
AflII	CTTAAG	2 cut(s)	38, 133
AgsI	TTSAA	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	93, 123
AluBI	AGCT	2 cut(s)	37, 172
AluI	AGCT	2 cut(s)	37, 172
AlwI	GGATC	4 cut(s)	73, 86, 158, 292
AoxI	GGCC	4 cut(s)	270, 278, 288, 318
ApoI	RAATTY	1 cut(s)	233
AspS9I	GGNCC	4 cut(s)	91, 270, 278, 289
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	91
BamHI	GGATCC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	168
BccI	CCATC	2 cut(s)	208, 292
BciT130I	CCWGG	2 cut(s)	95, 125
BclI	TGATCA	2 cut(s)	187, 256
BfmI	CTRYAG	1 cut(s)	335
BfrI	CTTAAG	2 cut(s)	38, 133
BfuAI	ACCTGC	1 cut(s)	342
BglI	GCCNNNNNGGC	1 cut(s)	269
Bme1390I	CCNGG	2 cut(s)	95, 125
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	4 cut(s)	91, 270, 278, 289
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	2 cut(s)	95, 125
BmsI	GCATC	3 cut(s)	129, 136, 211
BpiI	GAAGAC	1 cut(s)	162
Bpu10I	CCTNAGC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 100
Bse118I	RCCGGY	1 cut(s)	272
BseBI	CCWGG	2 cut(s)	95, 125
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	2 cut(s)	88, 100
BseMII	CTCAG	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	4 cut(s)	272, 280, 290, 320
BsiSI	CCGG	1 cut(s)	273
BslI	CCNNNNNNNGG	2 cut(s)	88, 100
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	4 cut(s)	272, 280, 290, 320
Bsp143I	GATC	5 cut(s)	78, 163, 187, 256, 297
BspACI	CCGC	3 cut(s)	276, 301, 303
BspANI	GGCC	4 cut(s)	272, 280, 290, 320
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	303
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	80
BspMAI	CTGCAG	1 cut(s)	339
BspMI	ACCTGC	1 cut(s)	342
BspPI	GGATC	4 cut(s)	73, 86, 158, 292
BspTI	CTTAAG	2 cut(s)	38, 133
BsrFI	RCCGGY	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	5 cut(s)	78, 163, 187, 256, 297
Bst2UI	CCWGG	2 cut(s)	95, 125
Bst6I	CTCTTC	1 cut(s)	51
BstAFI	CTTAAG	2 cut(s)	38, 133
BstC8I	GCNNGC	3 cut(s)	274, 278, 305
BstDEI	CTNAG	1 cut(s)	168
BstDSI	CCRYGG	1 cut(s)	301
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	303
BstKTI	GATC	5 cut(s)	81, 166, 190, 259, 300
BstMBI	GATC	5 cut(s)	78, 163, 187, 256, 297
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	2 cut(s)	95, 125
BstSCI	CCNGG	2 cut(s)	93, 123
BstSFI	CTRYAG	1 cut(s)	335
BstUI	CGCG	1 cut(s)	303
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BsuRI	GGCC	4 cut(s)	272, 280, 290, 320
BtgI	CCRYGG	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	342
Cac8I	GCNNGC	3 cut(s)	274, 278, 305
CciI	TCATGA	1 cut(s)	208
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	4 cut(s)	91, 270, 278, 289
Cfr42I	CCGCGG	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	3 cut(s)	209, 254, 345
CviJI	RGCY	9 cut(s)	5, 37, 172, 206, 272, 280, 290, 307, 320
CviKI_1	RGCY	9 cut(s)	5, 37, 172, 206, 272, 280, 290, 307, 320
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	5 cut(s)	80, 165, 189, 258, 299
DpnII	GATC	5 cut(s)	78, 163, 187, 256, 297
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	93, 123
FaeI	CATG	3 cut(s)	212, 257, 348
FaiI	YATR	3 cut(s)	210, 255, 346
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	3 cut(s)	208, 253, 344
FauI	CCCGC	2 cut(s)	269, 296
FbaI	TGATCA	2 cut(s)	187, 256
FokI	GGATG	1 cut(s)	107
HaeIII	GGCC	4 cut(s)	272, 280, 290, 320
HapII	CCGG	1 cut(s)	273
Hin1II	CATG	3 cut(s)	212, 257, 348
HindIII	AAGCTT	1 cut(s)	35
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	149, 337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	3 cut(s)	212, 257, 348
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Ksp22I	TGATCA	2 cut(s)	187, 256
KspI	CCGCGG	1 cut(s)	304
Kzo9I	GATC	5 cut(s)	78, 163, 187, 256, 297
LpnPI	CCDG	9 cut(s)	60, 74, 80, 107, 110, 137, 223, 253, 286
LweI	GCATC	3 cut(s)	129, 136, 211
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	2 cut(s)	16, 45
MalI	GATC	5 cut(s)	80, 165, 189, 258, 299
MboI	GATC	5 cut(s)	78, 163, 187, 256, 297
MboII	GAAGA	4 cut(s)	65, 68, 167, 230
MflI	RGATCY	1 cut(s)	78
MluCI	AATT	2 cut(s)	110, 233
MnlI	CCTC	4 cut(s)	52, 177, 291, 310
MroNI	GCCGGC	1 cut(s)	272
MseI	TTAA	2 cut(s)	39, 134
MspA1I	CMGCKG	2 cut(s)	172, 303
MspCI	CTTAAG	2 cut(s)	38, 133
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	2 cut(s)	95, 125
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	2 cut(s)	95, 125
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	269
NaeI	GCCGGC	1 cut(s)	274
NdeII	GATC	5 cut(s)	78, 163, 187, 256, 297
NgoMIV	GCCGGC	1 cut(s)	272
NlaIII	CATG	3 cut(s)	212, 257, 348
NlaIV	GGNNCC	1 cut(s)	80
PagI	TCATGA	1 cut(s)	208
PctI	GAATGC	1 cut(s)	241
PdiI	GCCGGC	1 cut(s)	274
PflMI	CCANNNNNTGG	1 cut(s)	100
PfoI	TCCNGGA	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	93, 123
PspGI	CCWGG	2 cut(s)	93, 123
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	4 cut(s)	91, 270, 278, 289
PstI	CTGCAG	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	78
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SacII	CCGCGG	1 cut(s)	304
SaqAI	TTAA	2 cut(s)	39, 134
Sau3AI	GATC	5 cut(s)	78, 163, 187, 256, 297
Sau96I	GGNCC	4 cut(s)	91, 270, 278, 289
ScrFI	CCNGG	2 cut(s)	95, 125
SetI	ASST	6 cut(s)	39, 47, 63, 93, 174, 336
SfaNI	GCATC	3 cut(s)	129, 136, 211
SfcI	CTRYAG	1 cut(s)	335
Sfr303I	CCGCGG	1 cut(s)	304
SgrBI	CCGCGG	1 cut(s)	304
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	2 cut(s)	38, 133
SmoI	CTYRAG	2 cut(s)	38, 133
Sse9I	AATT	2 cut(s)	110, 233
SsiI	CCGC	3 cut(s)	276, 301, 303
StyD4I	CCNGG	2 cut(s)	93, 123
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	51
TasI	AATT	2 cut(s)	110, 233
TatI	WGTACW	1 cut(s)	85
Tru1I	TTAA	2 cut(s)	39, 134
Tru9I	TTAA	2 cut(s)	39, 134
TspDTI	ATGAA	1 cut(s)	123
Van91I	CCANNNNNTGG	1 cut(s)	100
Vha464I	CTTAAG	2 cut(s)	38, 133
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.