Rorug07G0134900

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
10577580 .. 10579331
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0134900.1

Sequence Viewer

Length: 459 bp
ATGGAAGATATATTGATGATCGTCAAGGTATGTACGTACCTAAGGCTTGAAATGGAAGCCATGTATTCAGATGTCCCCATGCTTATTCGTGCTACTGAATCGTCCATTGAGAGCTCAGAGAAAGTGGGACTTGATAGTTTGAAAGATGCTGTTAGACAGATGCCATCTACTATTTGCATTGAGGGCCTTGATCACTTTGATGCTGCAGAAGAAGGGACTGATCATCATCAGCATATGATTGCTCGCTTGCCCTGCCCACATACTGACATACATGTCATGCAGATTGCAATCATTGCATTGTCCAGTGGCTCAAGACGAATTACGTGTGTCCCTTGCCGATCCCCAATTGTGGAAGTGGACAAGGACGAGCCACCAAAACCCCTATTGAGGCTGCATTGGCCTTTGCTCATGATGTCTGCGGTTGGTCAAGGAGATGGTGCCGGCCATCTGCACTTCTGA

Protein Analysis

152

Amino Acids

16.93

Weight (kDa)

5.36

Isoelectric Point (pI)

53.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000482)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica MD06G1024000.v1.1
prunus_persica Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis pycom16g25280
rosa_chinensis RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii Rroxscaffold_3G00246720
rosa_rugosa Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 437
AciI CCGC 1 cut(s) 419
AclWI GGATC 1 cut(s) 333
AcoI YGGCCR 1 cut(s) 442
AfaI GTAC 2 cut(s) 34, 38
AfiI CCNNNNNNNGG 2 cut(s) 349, 387
AflIII ACRYGT 2 cut(s) 271, 323
AgsI TTSAA 2 cut(s) 50, 142
AluBI AGCT 1 cut(s) 114
AluI AGCT 1 cut(s) 114
Alw21I GWGCWC 1 cut(s) 116
AlwI GGATC 1 cut(s) 333
AoxI GGCC 3 cut(s) 184, 398, 442
ApeKI GCWGC 2 cut(s) 203, 391
AspS9I GGNCC 1 cut(s) 184
AxyI CCTNAGG 1 cut(s) 41
BanI GGYRCC 1 cut(s) 437
BanII GRGCYC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 190, 378
BccI CCATC 3 cut(s) 172, 428, 453
BclI TGATCA 2 cut(s) 190, 220
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 2 cut(s) 204, 392
BlsI GCNGC 2 cut(s) 205, 393
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 439
BmsI GCATC 3 cut(s) 136, 150, 190
BpuEI CTTGAG 1 cut(s) 295
BsaAI YACGTR 2 cut(s) 36, 324
BsaBI GATNNNNATC 2 cut(s) 225, 287
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 387
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 1 cut(s) 303
Bse21I CCTNAGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 291
Bse8I GATNNNNATC 2 cut(s) 225, 287
BseJI GATNNNNATC 2 cut(s) 225, 287
BseLI CCNNNNNNNGG 2 cut(s) 349, 387
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 303
BseXI GCAGC 2 cut(s) 190, 378
BsgI GTGCAG 1 cut(s) 434
BshFI GGCC 3 cut(s) 186, 400, 444
BshNI GGYRCC 1 cut(s) 437
BsiHKAI GWGCWC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 441
BslFI GGGAC 4 cut(s) 59, 141, 229, 314
BslI CCNNNNNNNGG 2 cut(s) 349, 387
BsmFI GGGAC 4 cut(s) 59, 141, 229, 314
BsnI GGCC 3 cut(s) 186, 400, 444
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 4 cut(s) 18, 190, 220, 338
BspACI CCGC 1 cut(s) 419
BspANI GGCC 3 cut(s) 186, 400, 444
BspCNI CTCAG 1 cut(s) 128
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 439
BspMAI CTGCAG 1 cut(s) 208
BspPI GGATC 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 440
BsrI ACTGG 1 cut(s) 303
BssAI RCCGGY 1 cut(s) 440
BssMI GATC 4 cut(s) 18, 190, 220, 338
BstAPI GCANNNNNTGC 1 cut(s) 293
BstBAI YACGTR 2 cut(s) 36, 324
BstC8I GCNNGC 3 cut(s) 244, 248, 442
BstDEI CTNAG 2 cut(s) 41, 115
BstKTI GATC 4 cut(s) 21, 193, 223, 341
BstMBI GATC 4 cut(s) 18, 190, 220, 338
BstMWI GCNNNNNNNGC 4 cut(s) 183, 252, 293, 397
BstNSI RCATGY 1 cut(s) 275
BstSFI CTRYAG 1 cut(s) 204
BstSNI TACGTA 1 cut(s) 36
BstV1I GCAGC 2 cut(s) 190, 378
Bsu36I CCTNAGG 1 cut(s) 41
BsuRI GGCC 3 cut(s) 186, 400, 444
BtsIMutI CAGTG 1 cut(s) 310
Cac8I GCNNGC 3 cut(s) 244, 248, 442
CciI TCATGA 1 cut(s) 408
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 1 cut(s) 184
Csp6I GTAC 2 cut(s) 33, 37
CviAII CATG 5 cut(s) 61, 79, 272, 277, 409
CviJI RGCY 9 cut(s) 46, 59, 114, 186, 309, 370, 391, 400, 444
CviKI_1 RGCY 9 cut(s) 46, 59, 114, 186, 309, 370, 391, 400, 444
CviQI GTAC 2 cut(s) 33, 37
DdeI CTNAG 2 cut(s) 41, 115
DpnI GATC 4 cut(s) 20, 192, 222, 340
DpnII GATC 4 cut(s) 18, 190, 220, 338
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
EaeI YGGCCR 1 cut(s) 442
Ecl136II GAGCTC 1 cut(s) 114
Eco105I TACGTA 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 114
Eco81I CCTNAGG 1 cut(s) 41
EcoICRI GAGCTC 1 cut(s) 114
EcoO109I RGGNCCY 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 116
FaeI CATG 5 cut(s) 64, 82, 275, 280, 412
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FaqI GGGAC 4 cut(s) 59, 141, 229, 314
FatI CATG 5 cut(s) 60, 78, 271, 276, 408
FauNDI CATATG 1 cut(s) 234
FbaI TGATCA 2 cut(s) 190, 220
Fnu4HI GCNGC 2 cut(s) 204, 392
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 2 cut(s) 204, 392
GluI GCNGC 2 cut(s) 204, 392
HaeIII GGCC 3 cut(s) 186, 400, 444
HapII CCGG 1 cut(s) 441
Hin1II CATG 5 cut(s) 64, 82, 275, 280, 412
HinfI GANTC 1 cut(s) 98
HpaII CCGG 1 cut(s) 441
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 3 cut(s) 70, 118, 458
Hpy188III TCNNGA 2 cut(s) 312, 409
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 1 cut(s) 206
HpyCH4IV ACGT 2 cut(s) 35, 323
HpyCH4V TGCA 7 cut(s) 177, 206, 280, 287, 296, 394, 451
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 252, 293, 397
HpyF3I CTNAG 2 cut(s) 41, 115
HpySE526I ACGT 2 cut(s) 35, 323
Hsp92II CATG 5 cut(s) 64, 82, 275, 280, 412
KroI GCCGGC 1 cut(s) 440
KroNI GCCGGC 1 cut(s) 442
Ksp22I TGATCA 2 cut(s) 190, 220
Kzo9I GATC 4 cut(s) 18, 190, 220, 338
LpnPI CCDG 3 cut(s) 265, 316, 454
Lsp1109I GCAGC 2 cut(s) 190, 378
LweI GCATC 3 cut(s) 136, 150, 190
MaeII ACGT 2 cut(s) 35, 323
MalI GATC 4 cut(s) 20, 192, 222, 340
MboI GATC 4 cut(s) 18, 190, 220, 338
MboII GAAGA 2 cut(s) 17, 221
MfeI CAATTG 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 2 cut(s) 318, 345
MnlI CCTC 2 cut(s) 175, 381
MroNI GCCGGC 1 cut(s) 440
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 1 cut(s) 441
MunI CAATTG 1 cut(s) 345
MwoI GCNNNNNNNGC 4 cut(s) 183, 252, 293, 397
NaeI GCCGGC 1 cut(s) 442
NdeI CATATG 1 cut(s) 234
NdeII GATC 4 cut(s) 18, 190, 220, 338
NgoMIV GCCGGC 1 cut(s) 440
NlaIII CATG 5 cut(s) 64, 82, 275, 280, 412
NlaIV GGNNCC 1 cut(s) 439
NspI RCATGY 1 cut(s) 275
PagI TCATGA 1 cut(s) 408
PciI ACATGT 1 cut(s) 271
PdiI GCCGGC 1 cut(s) 442
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 2 cut(s) 205, 393
Ppu21I YACGTR 2 cut(s) 36, 324
PscI ACATGT 1 cut(s) 271
Psp124BI GAGCTC 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 439
PspPI GGNCC 1 cut(s) 184
PstI CTGCAG 1 cut(s) 208
RsaI GTAC 2 cut(s) 34, 38
RsaNI GTAC 2 cut(s) 33, 37
RseI CAYNNNNRTG 1 cut(s) 198
SacI GAGCTC 1 cut(s) 116
SatI GCNGC 2 cut(s) 204, 392
Sau3AI GATC 4 cut(s) 18, 190, 220, 338
Sau96I GGNCC 1 cut(s) 184
SduI GDGCHC 1 cut(s) 116
SetI ASST 5 cut(s) 30, 38, 42, 116, 326
SfaNI GCATC 3 cut(s) 136, 150, 190
SfcI CTRYAG 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
SnaBI TACGTA 1 cut(s) 36
Sse9I AATT 2 cut(s) 318, 345
SsiI CCGC 1 cut(s) 419
SstI GAGCTC 1 cut(s) 116
TaiI ACGT 2 cut(s) 38, 326
TasI AATT 2 cut(s) 318, 345
TfiI GAWTC 1 cut(s) 98
TscAI CASTG 1 cut(s) 310
TseI GCWGC 2 cut(s) 203, 391
TspRI CASTG 1 cut(s) 310
XceI RCATGY 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.