RchiOBHm_Chr7g0212671

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
29918352 .. 29919629
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19031

Sequence Viewer

Length: 1278 bp
ATGTGGTCTGAGAAAGTTCGACGACTATCAATAGTTAACACACTGCAGAATGCACATCAAAAGAGGACACCGTCTCAACTTCGTTCTTTGCTCGTTTTTGGGGTAGAAGATTCACTTACTGATTTTCCCATACCAAAATTGTTTCCTACAGGTGTTCAGTTGCTTACAGTATTAGACTTACAAGGTGCACATCTGGATATGTTTCCAAGAGAGGTTGTCAAGCTTCTTCTTCTCAGGTATCTTAGCTTGAGGCATACAAAGGTGAAACAAATTCCAGGCTCCATCAAGAAGCTACAAAACCTAGAGACCTTGGATCTTAAACACTCGCAAGTTGTTGAATTACCTTCTGAGATTTTGAATCTCAAGCGACTTCGTCATCTCCTGGTGTATCGTTATGAGGTTGAGTCATATGCACGCTTCAATGCCAGAAAAGGAGTTAAGGTCCCTGCAGGAATATGTGGTTTGCAATTGCTCCAAAAGCTTTGCTTTATAGAGGCAAATCAAGACACTGGTGCTTTAATGGCAGAGCTCGGGAGAATGAACCAACTAAGGAGGTTAGGCATTTTCAAGTTGAGAAAAGAAGATGGGGTCACCTTATGTTCGTCCGTCCAAAATATGACCAATCTTCGCTCGTTCTCTGTATCTTCAACAGAGAAGGACAAGATAATTGACCTTAGCCACATTTCTCGTGCTCCTCCATTTCTTCAGCGACTATACTTGACAGGTCGTTTAGAAAAGTTACCACACTGGATTTCTTCTCTTCAAAACCTGGTCAGACTGTTTCTAAAATGGAGTCGGTTGAAGGAGGATCCTCTAGTACATCTTCAGGGTTTGCCAAACCTGGTACATCTTGAACTTCTGCAAGTTTATGATGGAGAAAGCTTGCATTTTGAGGCAGGAGGGTTTCCAAGTCTGAAGTTATTAGGTATTGATAAATTGGAAGAACTACAATCGGTAACCATAGAGAAGGGAGCAATGCCTTGTCTGGAAAAGTTAATTATCCAGCGGTGTAAATTGTTGAAGGTCCCATCTGGCATTGAACATTTAACCAATTTAAAGCTGCTTGAATTTTTCGATATGCCAGATGAATTGATCATGCCACTACATCCAGATGGTGGAGAAGATCATTGGAAAGTTGCTCATGTTCCAGCAGTTTATTATTCCTATTGGAGAGGTGGGGGTTGGGACGTCTATTCATTAGTCAATGAAGGGGAGAGTTTTAATTCGGGTACTTCTGCCGAGAGGAGGCTCGAACGTAATATTCTGTGGAAGGTGTAG

Protein Analysis

425

Amino Acids

48.7

Weight (kDa)

9.24

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 26 - 355 2.4e-48 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000482)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica MD06G1024000.v1.1
prunus_persica Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis pycom16g25280
rosa_chinensis RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii Rroxscaffold_3G00246720
rosa_rugosa Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1191
AccB7I CCANNNNNTGG 1 cut(s) 1115
AciI CCGC 1 cut(s) 1006
AclWI GGATC 3 cut(s) 321, 803, 816
AcsI RAATTY 2 cut(s) 270, 1067
AcuI CTGAAG 3 cut(s) 689, 809, 935
AcyI GRCGYC 1 cut(s) 1188
AfaI GTAC 3 cut(s) 819, 846, 1231
AfiI CCNNNNNNNGG 2 cut(s) 1115, 1245
AjnI CCWGG 4 cut(s) 274, 381, 768, 840
AluBI AGCT 7 cut(s) 223, 246, 292, 481, 529, 882, 1060
AluI AGCT 7 cut(s) 223, 246, 292, 481, 529, 882, 1060
Alw21I GWGCWC 3 cut(s) 190, 531, 694
Alw26I GTCTC 2 cut(s) 78, 299
Alw44I GTGCAC 1 cut(s) 186
AlwI GGATC 3 cut(s) 321, 803, 816
Ama87I CYCGRG 1 cut(s) 530
ApaLI GTGCAC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 1060
ApoI RAATTY 2 cut(s) 270, 1067
AspS9I GGNCC 2 cut(s) 442, 1024
AsuHPI GGTGA 2 cut(s) 274, 583
AvaI CYCGRG 1 cut(s) 530
AvaII GGWCC 2 cut(s) 442, 1024
BaeGI GKGCMC 1 cut(s) 190
BamHI GGATCC 1 cut(s) 808
BanII GRGCYC 1 cut(s) 531
BauI CACGAG 1 cut(s) 687
Bbv12I GWGCWC 3 cut(s) 190, 531, 694
BbvI GCAGC 1 cut(s) 1047
BccI CCATC 5 cut(s) 290, 578, 866, 1036, 1106
BciT130I CCWGG 4 cut(s) 276, 383, 770, 842
BclI TGATCA 1 cut(s) 1092
BcoDI GTCTC 2 cut(s) 78, 299
BfaI CTAG 2 cut(s) 302, 815
BfmI CTRYAG 3 cut(s) 44, 147, 447
BisI GCNGC 1 cut(s) 1061
BlsI GCNGC 1 cut(s) 1062
Bme1390I CCNGG 4 cut(s) 276, 383, 770, 842
Bme18I GGWCC 2 cut(s) 442, 1024
BmeT110I CYCGRG 1 cut(s) 530
BmgT120I GGNCC 2 cut(s) 442, 1024
BmiI GGNNCC 4 cut(s) 280, 444, 810, 1026
BmrFI CCNGG 4 cut(s) 276, 383, 770, 842
Bpu10I CCTNAGC 1 cut(s) 674
BpuEI CTTGAG 2 cut(s) 268, 347
BsaHI GRCGYC 1 cut(s) 1188
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 309
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 2 cut(s) 1115, 1245
Bse1I ACTGG 2 cut(s) 514, 752
Bse3DI GCAATG 1 cut(s) 981
BseBI CCWGG 4 cut(s) 276, 383, 770, 842
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 1 cut(s) 1105
BseLI CCNNNNNNNGG 2 cut(s) 1115, 1245
BseMI GCAATG 1 cut(s) 981
BseMII CTCAG 2 cut(s) 247, 339
BseNI ACTGG 2 cut(s) 514, 752
BseRI GAGGAG 2 cut(s) 684, 1258
BseSI GKGCMC 1 cut(s) 190
BseXI GCAGC 1 cut(s) 1047
BsiHKAI GWGCWC 3 cut(s) 190, 531, 694
BsiHKCI CYCGRG 1 cut(s) 530
BslFI GGGAC 3 cut(s) 428, 1010, 1199
BslI CCNNNNNNNGG 2 cut(s) 1115, 1245
BsmAI GTCTC 2 cut(s) 78, 299
BsmBI CGTCTC 1 cut(s) 78
BsmFI GGGAC 3 cut(s) 428, 1010, 1199
BsmI GAATGC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 530
Bsp1286I GDGCHC 3 cut(s) 190, 531, 694
Bsp143I GATC 4 cut(s) 313, 808, 1092, 1123
BspACI CCGC 1 cut(s) 1006
BspCNI CTCAG 2 cut(s) 246, 340
BspLI GGNNCC 4 cut(s) 280, 444, 810, 1026
BspMAI CTGCAG 2 cut(s) 48, 451
BspPI GGATC 3 cut(s) 321, 803, 816
BspTNI GGTCTC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 981
BsrI ACTGG 2 cut(s) 514, 752
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 4 cut(s) 313, 808, 1092, 1123
BssNI GRCGYC 1 cut(s) 1188
BssSI CACGAG 1 cut(s) 687
BssT1I CCWWGG 1 cut(s) 309
Bst2BI CACGAG 1 cut(s) 687
Bst2UI CCWGG 4 cut(s) 276, 383, 770, 842
Bst4CI ACNGT 3 cut(s) 72, 169, 780
Bst6I CTCTTC 1 cut(s) 765
BstACI GRCGYC 1 cut(s) 1188
BstC8I GCNNGC 2 cut(s) 415, 884
BstDEI CTNAG 6 cut(s) 9, 233, 242, 348, 548, 674
BstEII GGTNACC 2 cut(s) 589, 955
BstF5I GGATG 1 cut(s) 1105
BstKTI GATC 4 cut(s) 316, 811, 1095, 1126
BstMAI GTCTC 2 cut(s) 78, 299
BstMBI GATC 4 cut(s) 313, 808, 1092, 1123
BstMWI GCNNNNNNNGC 2 cut(s) 478, 521
BstNI CCWGG 4 cut(s) 276, 383, 770, 842
BstPI GGTNACC 2 cut(s) 589, 955
BstSCI CCNGG 4 cut(s) 274, 381, 768, 840
BstSFI CTRYAG 3 cut(s) 44, 147, 447
BstSLI GKGCMC 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 1047
BstX2I RGATCY 2 cut(s) 313, 808
BstYI RGATCY 2 cut(s) 313, 808
BtsCI GGATG 1 cut(s) 1105
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 3 cut(s) 41, 507, 745
Cac8I GCNNGC 2 cut(s) 415, 884
Cfr13I GGNCC 2 cut(s) 442, 1024
CsiI ACCWGGT 2 cut(s) 768, 840
Csp6I GTAC 3 cut(s) 818, 845, 1230
CviAII CATG 2 cut(s) 1096, 1142
CviQI GTAC 3 cut(s) 818, 845, 1230
DdeI CTNAG 6 cut(s) 9, 233, 242, 348, 548, 674
DpnI GATC 4 cut(s) 315, 810, 1094, 1125
DpnII GATC 4 cut(s) 313, 808, 1092, 1123
DraI TTTAAA 1 cut(s) 1056
Eam1104I CTCTTC 1 cut(s) 765
EarI CTCTTC 1 cut(s) 765
Ecl136II GAGCTC 1 cut(s) 529
Eco130I CCWWGG 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 531
Eco31I GGTCTC 1 cut(s) 299
Eco47I GGWCC 2 cut(s) 442, 1024
Eco53kI GAGCTC 1 cut(s) 529
Eco57I CTGAAG 3 cut(s) 689, 809, 935
Eco88I CYCGRG 1 cut(s) 530
Eco91I GGTNACC 2 cut(s) 589, 955
EcoICRI GAGCTC 1 cut(s) 529
EcoO109I RGGNCCY 2 cut(s) 442, 1024
EcoO65I GGTNACC 2 cut(s) 589, 955
EcoRII CCWGG 4 cut(s) 274, 381, 768, 840
EcoT14I CCWWGG 1 cut(s) 309
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 1 cut(s) 309
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 2 cut(s) 1099, 1145
FalI AAGNNNNNCTT 4 cut(s) 99, 131, 470, 502
FaqI GGGAC 3 cut(s) 428, 1010, 1199
FatI CATG 2 cut(s) 1095, 1141
FauNDI CATATG 1 cut(s) 409
FbaI TGATCA 1 cut(s) 1092
Fnu4HI GCNGC 1 cut(s) 1061
FokI GGATG 1 cut(s) 1092
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 1 cut(s) 1061
FspBI CTAG 2 cut(s) 302, 815
GluI GCNGC 1 cut(s) 1061
Hin1I GRCGYC 1 cut(s) 1188
Hin1II CATG 2 cut(s) 1099, 1145
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 3 cut(s) 221, 479, 880
HinfI GANTC 4 cut(s) 110, 358, 404, 793
HpaI GTTAAC 1 cut(s) 37
HphI GGTGA 2 cut(s) 274, 583
Hpy166II GTNNAC 2 cut(s) 37, 188
Hpy188I TCNGA 4 cut(s) 10, 349, 776, 915
Hpy188III TCNNGA 7 cut(s) 194, 286, 503, 532, 851, 986, 1109
Hpy8I GTNNAC 2 cut(s) 37, 188
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 7 cut(s) 354, 649, 796, 961, 1015, 1202, 1264
HpyCH4III ACNGT 3 cut(s) 72, 169, 780
HpyCH4IV ACGT 2 cut(s) 1188, 1255
HpyCH4V TGCA 8 cut(s) 46, 53, 188, 413, 449, 466, 862, 886
HpyF10VI GCNNNNNNNGC 2 cut(s) 478, 521
HpyF3I CTNAG 6 cut(s) 9, 233, 242, 348, 548, 674
HpySE526I ACGT 2 cut(s) 1188, 1255
Hsp92I GRCGYC 1 cut(s) 1188
Hsp92II CATG 2 cut(s) 1099, 1145
Ksp22I TGATCA 1 cut(s) 1092
KspAI GTTAAC 1 cut(s) 37
Kzo9I GATC 4 cut(s) 313, 808, 1092, 1123
LmnI GCTCC 4 cut(s) 284, 477, 697, 971
Lsp1109I GCAGC 1 cut(s) 1047
MabI ACCWGGT 2 cut(s) 768, 840
MaeI CTAG 2 cut(s) 302, 815
MaeII ACGT 2 cut(s) 1188, 1255
MaeIII GTNAC 3 cut(s) 589, 738, 955
MalI GATC 4 cut(s) 315, 810, 1094, 1125
MboI GATC 4 cut(s) 313, 808, 1092, 1123
MfeI CAATTG 1 cut(s) 467
MflI RGATCY 2 cut(s) 313, 808
MhlI GDGCHC 3 cut(s) 190, 531, 694
MlyI GAGTC 2 cut(s) 413, 802
MseI TTAA 8 cut(s) 36, 318, 438, 518, 995, 1046, 1055, 1221
MslI CAYNNNNRTG 1 cut(s) 1110
MspA1I CMGCKG 1 cut(s) 1006
MspR9I CCNGG 4 cut(s) 276, 383, 770, 842
MunI CAATTG 1 cut(s) 467
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 4 cut(s) 276, 383, 770, 842
MwoI GCNNNNNNNGC 2 cut(s) 478, 521
NdeI CATATG 1 cut(s) 409
NdeII GATC 4 cut(s) 313, 808, 1092, 1123
NlaIII CATG 2 cut(s) 1099, 1145
NlaIV GGNNCC 4 cut(s) 280, 444, 810, 1026
NmeAIII GCCGAG 1 cut(s) 1264
NmuCI GTSAC 1 cut(s) 589
PctI GAATGC 1 cut(s) 55
PfeI GAWTC 2 cut(s) 110, 358
PflFI GACNNNGTC 2 cut(s) 70, 372
PflMI CCANNNNNTGG 1 cut(s) 1115
PkrI GCNGC 1 cut(s) 1062
PleI GAGTC 2 cut(s) 412, 801
PpsI GAGTC 2 cut(s) 412, 801
PpuMI RGGWCCY 2 cut(s) 442, 1024
Psp124BI GAGCTC 1 cut(s) 531
Psp5II RGGWCCY 2 cut(s) 442, 1024
Psp6I CCWGG 4 cut(s) 274, 381, 768, 840
PspEI GGTNACC 2 cut(s) 589, 955
PspGI CCWGG 4 cut(s) 274, 381, 768, 840
PspN4I GGNNCC 4 cut(s) 280, 444, 810, 1026
PspPI GGNCC 2 cut(s) 442, 1024
PspPPI RGGWCCY 2 cut(s) 442, 1024
PstI CTGCAG 2 cut(s) 48, 451
PsuI RGATCY 2 cut(s) 313, 808
PsyI GACNNNGTC 2 cut(s) 70, 372
RsaI GTAC 3 cut(s) 819, 846, 1231
RsaNI GTAC 3 cut(s) 818, 845, 1230
RseI CAYNNNNRTG 1 cut(s) 1110
SacI GAGCTC 1 cut(s) 531
SaqAI TTAA 8 cut(s) 36, 318, 438, 518, 995, 1046, 1055, 1221
SatI GCNGC 1 cut(s) 1061
Sau3AI GATC 4 cut(s) 313, 808, 1092, 1123
Sau96I GGNCC 2 cut(s) 442, 1024
SbfI CCTGCAGG 1 cut(s) 451
SchI GAGTC 2 cut(s) 413, 802
ScrFI CCNGG 4 cut(s) 276, 383, 770, 842
SdaI CCTGCAGG 1 cut(s) 451
SduI GDGCHC 3 cut(s) 190, 531, 694
SexAI ACCWGGT 2 cut(s) 768, 840
SfcI CTRYAG 3 cut(s) 44, 147, 447
SinI GGWCC 2 cut(s) 442, 1024
SmiMI CAYNNNNRTG 1 cut(s) 1110
SmlI CTYRAG 2 cut(s) 247, 362
SmoI CTYRAG 2 cut(s) 247, 362
Sse8387I CCTGCAGG 1 cut(s) 451
SsiI CCGC 1 cut(s) 1006
SspI AATATT 1 cut(s) 1261
SspMI CTAG 2 cut(s) 302, 815
SstI GAGCTC 1 cut(s) 531
StyD4I CCNGG 4 cut(s) 274, 381, 768, 840
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 3 cut(s) 72, 169, 780
TaiI ACGT 2 cut(s) 1191, 1258
TaqI TCGA 3 cut(s) 19, 1074, 1251
TatI WGTACW 1 cut(s) 817
TfiI GAWTC 2 cut(s) 110, 358
Tru1I TTAA 8 cut(s) 36, 318, 438, 518, 995, 1046, 1055, 1221
Tru9I TTAA 8 cut(s) 36, 318, 438, 518, 995, 1046, 1055, 1221
TscAI CASTG 3 cut(s) 48, 514, 752
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 1 cut(s) 1060
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 4 cut(s) 554, 1101, 1185, 1221
TspGWI ACGGA 1 cut(s) 595
TspRI CASTG 3 cut(s) 48, 514, 752
Tth111I GACNNNGTC 2 cut(s) 70, 372
Van91I CCANNNNNTGG 1 cut(s) 1115
VneI GTGCAC 1 cut(s) 186
VpaK11BI GGWCC 2 cut(s) 442, 1024
XapI RAATTY 2 cut(s) 270, 1067
XspI CTAG 2 cut(s) 302, 815
ZraI GACGTC 1 cut(s) 1189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.