Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Reverse (-)

28928884 .. 28931736

Gene Structure 2853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG284600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2853 bp

ATGGCAGAAAGTGCAGTCACCTTTTTGGTGGACAGGCTCACAACATTACTCGAAGAAGAGGTGAAACTCTTGTCAGGGATCCGAGAACAGGTCGAGGACCTGGTTGATGAATTGGAGCGCATCAAGGCCTTCTTAAGGGTTGCTGACGCGAAGGAAGACAGCAATCCTCAGCTCAAAGTGTGGGTTAAACAAGTCAGAGAAGTAGCTCATGAAATGGAAGATGCCCTTGATAAATTCAGGCTTTTCCATTCACACGATCACGGTCATGGATTCCGAGCTTCCCTTCATAAGCTTTCTTTTATCATCAAGAAATGGAAAGCTAAGCATCAAATTTCTGCTGATATTCAAAGAATAAACTCAAAAGTCAAAAACCTCTACGAGGGACATGAGAGATACAAACTTGTTGACCAAGCTGGCTCCAGATCTGCTCGTCTGGTTCAGCACCACAAGTTTGATCAATGGGATTCCCTTTTACTGGAAGAGGCTGATCTTGTGGCCATTGGCGAGCGCAAAAAGCAACTGATTGAGTTGCTTATGAAGGAAGACACTGGACGCCAGGTGGTTCCAGTAGTTGGGATGGGTGGACTGGGGAAAACTACCTTGGTAAAGCAAGTCTATGAGGATCCAAAAGTTCAGAAACGTTACAAGGTACATGCTTGGATCACTGTTTCTCAATCATTCAAGACAAGTCAGCTCCTAAGACACATGATCAATAATATCTTCAAAGTTATCCAGAAACCGGTTCCTGAAGATGAAGAAGTTGAAACCATGGATAACAATCAGCTAAGAGAGAGAATCAAAAAATTGCTGCAGAATAGTAGGTACCTGATTGTTCTTGATGGTATATGGCATATATCGGACTGGGATGCCATCAATCATGTAATGCCGAACAACAATCGTGGTAGTCGAGTAATGCTCACTACTCGCTATGTAAATGTAGCCTCTGCCTCTTGCTTGGGGAACCATGACATGCTCTACCATTTAGAGCCCTTATCTCCAGAGGATTCTTGGACTCTTTTCTCTAAGAAGACATTTCATGGAGAGTCATGCCCACCAAATTTGGAGGAAATTTGTCGATCCATCCTGATGAAATGCAGGGGACTGCCCCTTGCAATTGTGGCCATCAGCGCTGTACTAGCTTTAAAAGACAAGAGAAATGTGGATGAATGGGCTGCTGTTTCTGGAAGCATTGGAGCTGAAATTGACGGAAATGATCAACTTTACAACCTGAAAAAATTTCTGTATCTCAGTTACAGTGATTTACCATACCATCTGAAATCTTGTTTCTTATATCTGAGCATCTTTCCTGATCTCTACAAAATTGAGCATATGAAATTAATTCGGTTATGGTTAGCTGAAGGATTTGTTATTGGAAAAGAGGGAAGGACACCAGAAGAAGCTGCAGAGAGTTACCTCAGAGAGTTATTGGACAGAAGTTTGATTCAAGCAGCAGAAACATCAACTGATGGGAGAGTTAAATCATATCGCATCCATGATCTTTTACGGGAGATTGTCATTTTGAAGTCTAAAGAGCAAAACTTTTCAGCAATAGAAAAAGATCAAGGTACAATGTGGCCTGATGAAAAAGTTCGAAGACTATCAATAGTCAACACGCTGCAGAATATACATCAAAAGAGGACACCATCCCGACTTCGTTCTTTGCTCGTTTTTGGGGTAGAAGATTCACTTACTGATTTTCCCATACCAAAATTGTTTCCTACCGGTCTTCAGTTGCTTACTGTATTAGACTTAGAAGGTGCACATCTGGAAATGTTTCCAATTGAGGTTGTCAAGCTTCTTCTTCTCAAGTACCTTAGCTTGAGGCATACAAAGGTGAAAGAAATTCCAAGCTCCATCAAGAAGCTACAAAACCTAGAGACCTTGGATCTTAAACATTCGCATGTTGTTGAATTACCTGCTGAGATTTTGAATCTCAAGCGACTTCGTCATCTCCTGGTTTATCGTTATGAGGTTGAGTCATATGCCCGATTTAATGCCAGAAAAGGAGTTAAGATTCCAGCAGGGATAAGTAGCTTGCAATCGCTCCAAAAGCTCTGCTTTATAGAGGCAAATCAATACAGTGGTGCTTTAATGGCAGAGCTTGGGAGAATGAAGCAACTAAGGAGGTTAGGCATTTATAAGTTGAGAGAAGAAGATGGGGCCACCTTATGCTCATCCGTCCAAAATATGACCAGCCTTCGCTCGTTGTCTGTATTTTCAGCAGAGAAAGAGAAGATAATTGATCTTAGCCACATTTCTCGTGCTCCTCCATTTCTTCAGCGACTATACTTGGCAGGGCGTTTAGAAAACTTACCCCACTGGATTTCTTCTCTTCAAAACCTGGTCAGACTGTTTCTAAAATGGAGTCGGCTGAAGGAGGATCCTCTAGTACATCTGCAGGGTTTGCCAAACCTGGTACATCTTGAACTTTTACAAGTTTATGATGGAGAAAGCTTGCACTTTGAGGCAGGAGGGTTTCCAAGTCTGAAGTTATTAGGTATTGATAAATTGGATGAACTACAATTGGTAACCATAGAGGAGGGAGCAATGCCTTCTCTAGAAAAGCTCATTATCCAGCGCTGCAAATGTTTGAAGAAGGTCCCATCTGGCATTGAACATTTAACCAATTTAAAGCTGCTTGAGTTTTTCGATATGCCAGATGAATTAATCATGCCACTACATCCAGATGGTGGAGAAGATCACTGGAAAGTCGCTCATGTTCCAGCAGTTTATTATTCATATTGGAGAGGTGGGGGTTGGGATTTCTATTCACTATTCAATGATGTAAAGAGTTTTAATTCGGGTCCTTCTGCCGTGAGGAGGCTCGAACCTAATATTCTACGGAAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

950

Amino Acids

109.21

Weight (kDa)

8.58

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	5 - 87	1.4e-25	Rx N-terminal domain
NB-ARC	PF00931	170 - 349	1.6e-43	NB-ARC domain
nSTAND6	PF25201	173 - 263	5.9e-06	Novel STAND NTPase 6
WHD_DRP	PF23559	434 - 505	4.6e-21	Disease resistance protein Winged helix domain
LRR_14	PF23598	551 - 880	1.2e-49	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2139
Acc36I	ACCTGC	1 cut(s)	1924
Acc65I	GGTACC	1 cut(s)	822
AccB1I	GGYRCC	1 cut(s)	822
AccB7I	CCANNNNNTGG	2 cut(s)	572, 2690
AccII	CGCG	1 cut(s)	149
AclI	AACGTT	1 cut(s)	640
AclWI	GGATC	9 cut(s)	73, 86, 617, 630, 668, 1071, 1893, 2375, 2388
AcoI	YGGCCR	2 cut(s)	495, 1119
AcsI	RAATTY	6 cut(s)	233, 330, 1057, 1068, 1235, 1842
AcuI	CTGAAG	6 cut(s)	768, 1377, 1712, 2261, 2393, 2507
AcyI	GRCGYC	1 cut(s)	553
AfaI	GTAC	7 cut(s)	651, 824, 1134, 1567, 1811, 2391, 2418
AfeI	AGCGCT	2 cut(s)	1129, 2579
AfiI	CCNNNNNNNGG	8 cut(s)	88, 135, 379, 475, 572, 739, 2690, 2820
AflII	CTTAAG	1 cut(s)	133
AgeI	ACCGGT	2 cut(s)	739, 1721
AjnI	CCWGG	5 cut(s)	99, 555, 1953, 2340, 2412
AjuI	GAANNNNNNNTTGG	2 cut(s)	584, 616
Alw21I	GWGCWC	2 cut(s)	1762, 2266
Alw26I	GTCTC	1 cut(s)	1871
Alw44I	GTGCAC	1 cut(s)	1758
AlwI	GGATC	9 cut(s)	73, 86, 617, 630, 668, 1071, 1893, 2375, 2388
Aor51HI	AGCGCT	2 cut(s)	1129, 2579
AoxI	GGCC	5 cut(s)	126, 495, 1119, 1574, 2160
ApaLI	GTGCAC	1 cut(s)	1758
ApeKI	GCWGC	7 cut(s)	808, 1172, 1400, 1448, 1615, 2580, 2635
ApoI	RAATTY	6 cut(s)	233, 330, 1057, 1068, 1235, 1842
AseI	ATTAAT	2 cut(s)	1337, 2666
AsiGI	ACCGGT	2 cut(s)	739, 1721
Asp700I	GAANNNNTTC	2 cut(s)	1587, 1773
Asp718I	GGTACC	1 cut(s)	822
AspLEI	GCGC	4 cut(s)	120, 510, 1130, 2580
AspS9I	GGNCC	4 cut(s)	97, 2160, 2599, 2804
AsuHPI	GGTGA	3 cut(s)	10, 73, 1846
AsuII	TTCGAA	1 cut(s)	1591
AvaII	GGWCC	3 cut(s)	97, 2599, 2804
BaeGI	GKGCMC	1 cut(s)	1762
BalI	TGGCCA	2 cut(s)	497, 1121
BamHI	GGATCC	3 cut(s)	78, 622, 2380
BanI	GGYRCC	1 cut(s)	822
BanII	GRGCYC	1 cut(s)	990
BauI	CACGAG	1 cut(s)	2259
BbsI	GAAGAC	5 cut(s)	162, 549, 1034, 1600, 1718
Bbv12I	GWGCWC	2 cut(s)	1762, 2266
BbvCI	CCTCAGC	1 cut(s)	168
BbvI	GCAGC	7 cut(s)	795, 1159, 1387, 1460, 1602, 2567, 2622
BceAI	ACGGC	1 cut(s)	2798
BciT130I	CCWGG	5 cut(s)	101, 557, 1955, 2342, 2414
BclI	TGATCA	3 cut(s)	454, 708, 1213
BcoDI	GTCTC	1 cut(s)	1871
BfaI	CTAG	4 cut(s)	1136, 1874, 2387, 2558
BfmI	CTRYAG	4 cut(s)	809, 1401, 1616, 2396
BfoI	RGCGCY	2 cut(s)	1131, 2581
BfrI	CTTAAG	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	1924
BglII	AGATCT	1 cut(s)	422
BisI	GCNGC	7 cut(s)	809, 1173, 1401, 1449, 1616, 2581, 2636
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	7 cut(s)	810, 1174, 1402, 1450, 1617, 2582, 2637
Bme1390I	CCNGG	5 cut(s)	101, 557, 1955, 2342, 2414
Bme18I	GGWCC	3 cut(s)	97, 2599, 2804
BmgT120I	GGNCC	4 cut(s)	97, 2160, 2599, 2804
BmrFI	CCNGG	5 cut(s)	101, 557, 1955, 2342, 2414
BmrI	ACTGGG	2 cut(s)	596, 871
BmsI	GCATC	6 cut(s)	129, 211, 334, 856, 1308, 1497
BmuI	ACTGGG	2 cut(s)	596, 871
BpiI	GAAGAC	5 cut(s)	162, 549, 1034, 1600, 1718
BplI	GAGNNNNNCTC	2 cut(s)	900, 932
BpmI	CTGGAG	2 cut(s)	403, 981
Bpu10I	CCTNAGC	2 cut(s)	168, 1814
Bpu1102I	GCTNAGC	1 cut(s)	321
Bpu14I	TTCGAA	1 cut(s)	1591
BpuEI	CTTGAG	4 cut(s)	1790, 1840, 1919, 2660
BsaBI	GATNNNNATC	1 cut(s)	777
BsaHI	GRCGYC	1 cut(s)	553
BsaI	GGTCTC	1 cut(s)	1871
BsaJI	CCNNGG	3 cut(s)	600, 768, 1881
BsaWI	WCCGGW	2 cut(s)	739, 1721
Bsc4I	CCNNNNNNNGG	8 cut(s)	88, 135, 379, 475, 572, 739, 2690, 2820
Bse118I	RCCGGY	2 cut(s)	739, 1721
Bse1I	ACTGG	7 cut(s)	480, 553, 566, 591, 866, 2324, 2708
Bse3DI	GCAATG	1 cut(s)	2553
Bse8I	GATNNNNATC	1 cut(s)	777
BseBI	CCWGG	5 cut(s)	101, 557, 1955, 2342, 2414
BseDI	CCNNGG	3 cut(s)	600, 768, 1881
BseGI	GGATG	9 cut(s)	582, 871, 1080, 1168, 1488, 1643, 2174, 2518, 2680
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	8 cut(s)	88, 135, 379, 475, 572, 739, 2690, 2820
BseMI	GCAATG	1 cut(s)	2553
BseMII	CTCAG	5 cut(s)	182, 1261, 1286, 1429, 1911
BseNI	ACTGG	7 cut(s)	480, 553, 566, 591, 866, 2324, 2708
BseRI	GAGGAG	3 cut(s)	2256, 2552, 2833
BseSI	GKGCMC	1 cut(s)	1762
BseXI	GCAGC	7 cut(s)	795, 1159, 1387, 1460, 1602, 2567, 2622
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	5 cut(s)	128, 497, 1121, 1576, 2162
BshNI	GGYRCC	1 cut(s)	822
BshTI	ACCGGT	2 cut(s)	739, 1721
BsiHKAI	GWGCWC	2 cut(s)	1762, 2266
BsiSI	CCGG	2 cut(s)	740, 1722
BslFI	GGGAC	3 cut(s)	396, 1113, 2585
BslI	CCNNNNNNNGG	8 cut(s)	88, 135, 379, 475, 572, 739, 2690, 2820
BsmAI	GTCTC	1 cut(s)	1871
BsmFI	GGGAC	3 cut(s)	396, 1113, 2585
BsnI	GGCC	5 cut(s)	128, 497, 1121, 1576, 2162
Bso31I	GGTCTC	1 cut(s)	1871
Bsp119I	TTCGAA	1 cut(s)	1591
Bsp1286I	GDGCHC	3 cut(s)	990, 1762, 2266
Bsp1720I	GCTNAGC	1 cut(s)	321
Bsp19I	CCATGG	1 cut(s)	768
BspANI	GGCC	5 cut(s)	128, 497, 1121, 1576, 2162
BspCNI	CTCAG	5 cut(s)	181, 1260, 1287, 1428, 1912
BspFNI	CGCG	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	208
BspMAI	CTGCAG	4 cut(s)	813, 1405, 1620, 2400
BspMI	ACCTGC	1 cut(s)	1924
BspPI	GGATC	9 cut(s)	73, 86, 617, 630, 668, 1071, 1893, 2375, 2388
BspT104I	TTCGAA	1 cut(s)	1591
BspT107I	GGYRCC	1 cut(s)	822
BspTI	CTTAAG	1 cut(s)	133
BspTNI	GGTCTC	1 cut(s)	1871
BsrDI	GCAATG	1 cut(s)	2553
BsrFI	RCCGGY	2 cut(s)	739, 1721
BsrI	ACTGG	7 cut(s)	480, 553, 566, 591, 866, 2324, 2708
BssAI	RCCGGY	2 cut(s)	739, 1721
BssECI	CCNNGG	3 cut(s)	600, 768, 1881
BssNI	GRCGYC	1 cut(s)	553
BssSI	CACGAG	1 cut(s)	2259
BssT1I	CCWWGG	3 cut(s)	600, 768, 1881
Bst2BI	CACGAG	1 cut(s)	2259
Bst2UI	CCWGG	5 cut(s)	101, 557, 1955, 2342, 2414
Bst4CI	ACNGT	6 cut(s)	263, 667, 1256, 1741, 2081, 2352
Bst6I	CTCTTC	3 cut(s)	51, 474, 2337
BstACI	GRCGYC	1 cut(s)	553
BstAFI	CTTAAG	1 cut(s)	133
BstAPI	GCANNNNNTGC	2 cut(s)	11, 2404
BstBI	TTCGAA	1 cut(s)	1591
BstC8I	GCNNGC	4 cut(s)	415, 506, 2036, 2456
BstDSI	CCRYGG	1 cut(s)	768
BstEII	GGTNACC	1 cut(s)	2527
BstENI	CCTNNNNNAGG	2 cut(s)	133, 377
BstF5I	GGATG	9 cut(s)	582, 871, 1080, 1168, 1488, 1643, 2174, 2518, 2680
BstFNI	CGCG	1 cut(s)	149
BstH2I	RGCGCY	2 cut(s)	1131, 2581
BstHHI	GCGC	4 cut(s)	120, 510, 1130, 2580
BstMAI	GTCTC	1 cut(s)	1871
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 514, 1118, 1127, 1136, 2050, 2093, 2404
BstNI	CCWGG	5 cut(s)	101, 557, 1955, 2342, 2414
BstNSI	RCATGY	3 cut(s)	656, 973, 1904
BstPI	GGTNACC	1 cut(s)	2527
BstSCI	CCNGG	5 cut(s)	99, 555, 1953, 2340, 2412
BstSFI	CTRYAG	4 cut(s)	809, 1401, 1616, 2396
BstSLI	GKGCMC	1 cut(s)	1762
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	7 cut(s)	795, 1159, 1387, 1460, 1602, 2567, 2622
BstV2I	GAAGAC	5 cut(s)	162, 549, 1034, 1600, 1718
BstX2I	RGATCY	5 cut(s)	78, 422, 622, 1885, 2380
BstYI	RGATCY	5 cut(s)	78, 422, 622, 1885, 2380
BsuRI	GGCC	5 cut(s)	128, 497, 1121, 1576, 2162
BtgI	CCRYGG	1 cut(s)	768
BtsCI	GGATG	9 cut(s)	582, 871, 1080, 1168, 1488, 1643, 2174, 2518, 2680
BtsIMutI	CAGTG	6 cut(s)	546, 663, 1261, 2086, 2317, 2701
BveI	ACCTGC	1 cut(s)	1924
Cac8I	GCNNGC	4 cut(s)	415, 506, 2036, 2456
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	4 cut(s)	120, 510, 1130, 2580
Cfr10I	RCCGGY	2 cut(s)	739, 1721
Cfr13I	GGNCC	4 cut(s)	97, 2160, 2599, 2804
CseI	GACGC	2 cut(s)	155, 561
CsiI	ACCWGGT	3 cut(s)	99, 2340, 2412
Csp6I	GTAC	7 cut(s)	650, 823, 1133, 1566, 1810, 2390, 2417
CspAI	ACCGGT	2 cut(s)	739, 1721
CspCI	CAANNNNNGTGG	4 cut(s)	880, 915, 1041, 1076
CviQI	GTAC	7 cut(s)	650, 823, 1133, 1566, 1810, 2390, 2417
DraI	TTTAAA	2 cut(s)	1143, 2631
EaeI	YGGCCR	2 cut(s)	495, 1119
Eam1104I	CTCTTC	3 cut(s)	51, 474, 2337
EarI	CTCTTC	3 cut(s)	51, 474, 2337
Eco130I	CCWWGG	3 cut(s)	600, 768, 1881
Eco147I	AGGCCT	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	990
Eco31I	GGTCTC	1 cut(s)	1871
Eco47I	GGWCC	3 cut(s)	97, 2599, 2804
Eco47III	AGCGCT	2 cut(s)	1129, 2579
Eco57I	CTGAAG	6 cut(s)	768, 1377, 1712, 2261, 2393, 2507
Eco91I	GGTNACC	1 cut(s)	2527
EcoNI	CCTNNNNNAGG	2 cut(s)	133, 377
EcoO109I	RGGNCCY	3 cut(s)	97, 2599, 2804
EcoO65I	GGTNACC	1 cut(s)	2527
EcoRII	CCWGG	5 cut(s)	99, 555, 1953, 2340, 2412
EcoT14I	CCWWGG	3 cut(s)	600, 768, 1881
EcoT38I	GRGCYC	1 cut(s)	990
ErhI	CCWWGG	3 cut(s)	600, 768, 1881
FalI	AAGNNNNNCTT	8 cut(s)	116, 148, 210, 242, 1671, 1703, 2042, 2074
FaqI	GGGAC	3 cut(s)	396, 1113, 2585
FauNDI	CATATG	2 cut(s)	1329, 1981
FbaI	TGATCA	3 cut(s)	454, 708, 1213
Fnu4HI	GCNGC	7 cut(s)	809, 1173, 1401, 1449, 1616, 2581, 2636
FokI	GGATG	9 cut(s)	589, 878, 1067, 1175, 1475, 1630, 2161, 2525, 2667
FriOI	GRGCYC	1 cut(s)	990
Fsp4HI	GCNGC	7 cut(s)	809, 1173, 1401, 1449, 1616, 2581, 2636
FspBI	CTAG	4 cut(s)	1136, 1874, 2387, 2558
GlaI	GCGC	4 cut(s)	119, 509, 1129, 2579
GluI	GCNGC	7 cut(s)	809, 1173, 1401, 1449, 1616, 2581, 2636
GsuI	CTGGAG	2 cut(s)	403, 981
HaeII	RGCGCY	2 cut(s)	1131, 2581
HaeIII	GGCC	5 cut(s)	128, 497, 1121, 1576, 2162
HapII	CCGG	2 cut(s)	740, 1722
HgaI	GACGC	2 cut(s)	155, 561
HhaI	GCGC	4 cut(s)	120, 510, 1130, 2580
Hin1I	GRCGYC	1 cut(s)	553
Hin6I	GCGC	4 cut(s)	118, 508, 1128, 2578
HinP1I	GCGC	4 cut(s)	118, 508, 1128, 2578
HincII	GTYRAC	2 cut(s)	406, 1609
HindII	GTYRAC	2 cut(s)	406, 1609
HindIII	AAGCTT	3 cut(s)	290, 1793, 2452
HpaII	CCGG	2 cut(s)	740, 1722
HphI	GGTGA	3 cut(s)	10, 73, 1846
Hpy166II	GTNNAC	5 cut(s)	31, 406, 584, 1609, 1760
Hpy8I	GTNNAC	5 cut(s)	31, 406, 584, 1609, 1760
HpyCH4III	ACNGT	6 cut(s)	263, 667, 1256, 1741, 2081, 2352
HpyCH4IV	ACGT	1 cut(s)	640
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 514, 1118, 1127, 1136, 2050, 2093, 2404
HpySE526I	ACGT	1 cut(s)	640
Hsp92I	GRCGYC	1 cut(s)	553
HspAI	GCGC	4 cut(s)	118, 508, 1128, 2578
KpnI	GGTACC	1 cut(s)	826
Ksp22I	TGATCA	3 cut(s)	454, 708, 1213
LmnI	GCTCC	8 cut(s)	115, 422, 699, 1193, 1856, 2049, 2269, 2543
Lsp1109I	GCAGC	7 cut(s)	795, 1159, 1387, 1460, 1602, 2567, 2622
LweI	GCATC	6 cut(s)	129, 211, 334, 856, 1308, 1497
MabI	ACCWGGT	3 cut(s)	99, 2340, 2412
MaeI	CTAG	4 cut(s)	1136, 1874, 2387, 2558
MaeII	ACGT	1 cut(s)	640
MaeIII	GTNAC	5 cut(s)	16, 641, 1250, 1409, 2527
MfeI	CAATTG	3 cut(s)	1113, 1779, 2522
MflI	RGATCY	5 cut(s)	78, 422, 622, 1885, 2380
MhlI	GDGCHC	3 cut(s)	990, 1762, 2266
MlsI	TGGCCA	2 cut(s)	497, 1121
MluNI	TGGCCA	2 cut(s)	497, 1121
MlyI	GAGTC	4 cut(s)	1006, 1052, 1985, 2374
Mox20I	TGGCCA	2 cut(s)	497, 1121
MroXI	GAANNNNTTC	2 cut(s)	1587, 1773
MscI	TGGCCA	2 cut(s)	497, 1121
MslI	CAYNNNNRTG	4 cut(s)	264, 1085, 1899, 2685
Msp20I	TGGCCA	2 cut(s)	497, 1121
MspCI	CTTAAG	1 cut(s)	133
MspI	CCGG	2 cut(s)	740, 1722
MspR9I	CCNGG	5 cut(s)	101, 557, 1955, 2342, 2414
MunI	CAATTG	3 cut(s)	1113, 1779, 2522
MvaI	CCWGG	5 cut(s)	101, 557, 1955, 2342, 2414
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	8 cut(s)	11, 514, 1118, 1127, 1136, 2050, 2093, 2404
NcoI	CCATGG	1 cut(s)	768
NdeI	CATATG	2 cut(s)	1329, 1981
NmuCI	GTSAC	1 cut(s)	16
NspI	RCATGY	3 cut(s)	656, 973, 1904
NspV	TTCGAA	1 cut(s)	1591
PagI	TCATGA	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	904
PdmI	GAANNNNTTC	2 cut(s)	1587, 1773
PfeI	GAWTC	8 cut(s)	270, 464, 795, 1004, 1441, 1682, 1930, 2014
PflFI	GACNNNGTC	1 cut(s)	1944
PflMI	CCANNNNNTGG	2 cut(s)	572, 2690
PinAI	ACCGGT	2 cut(s)	739, 1721
PkrI	GCNGC	7 cut(s)	810, 1174, 1402, 1450, 1617, 2582, 2637
PleI	GAGTC	4 cut(s)	1006, 1051, 1984, 2373
PpsI	GAGTC	4 cut(s)	1006, 1051, 1984, 2373
PpuMI	RGGWCCY	3 cut(s)	97, 2599, 2804
PshBI	ATTAAT	2 cut(s)	1337, 2666
PsiI	TTATAA	1 cut(s)	2139
Psp1406I	AACGTT	1 cut(s)	640
Psp5II	RGGWCCY	3 cut(s)	97, 2599, 2804
Psp6I	CCWGG	5 cut(s)	99, 555, 1953, 2340, 2412
PspEI	GGTNACC	1 cut(s)	2527
PspGI	CCWGG	5 cut(s)	99, 555, 1953, 2340, 2412
PspPI	GGNCC	4 cut(s)	97, 2160, 2599, 2804
PspPPI	RGGWCCY	3 cut(s)	97, 2599, 2804
PstI	CTGCAG	4 cut(s)	813, 1405, 1620, 2400
PsuI	RGATCY	5 cut(s)	78, 422, 622, 1885, 2380
PsyI	GACNNNGTC	1 cut(s)	1944
RsaI	GTAC	7 cut(s)	651, 824, 1134, 1567, 1811, 2391, 2418
RsaNI	GTAC	7 cut(s)	650, 823, 1133, 1566, 1810, 2390, 2417
RseI	CAYNNNNRTG	4 cut(s)	264, 1085, 1899, 2685
SatI	GCNGC	7 cut(s)	809, 1173, 1401, 1449, 1616, 2581, 2636
Sau96I	GGNCC	4 cut(s)	97, 2160, 2599, 2804
SchI	GAGTC	4 cut(s)	1006, 1052, 1985, 2374
ScrFI	CCNGG	5 cut(s)	101, 557, 1955, 2342, 2414
SduI	GDGCHC	3 cut(s)	990, 1762, 2266
SexAI	ACCWGGT	3 cut(s)	99, 2340, 2412
SfaNI	GCATC	6 cut(s)	129, 211, 334, 856, 1308, 1497
SfcI	CTRYAG	4 cut(s)	809, 1401, 1616, 2396
SfuI	TTCGAA	1 cut(s)	1591
SinI	GGWCC	3 cut(s)	97, 2599, 2804
SmiMI	CAYNNNNRTG	4 cut(s)	264, 1085, 1899, 2685
SmlI	CTYRAG	5 cut(s)	133, 1805, 1819, 1934, 2639
SmoI	CTYRAG	5 cut(s)	133, 1805, 1819, 1934, 2639
SseBI	AGGCCT	1 cut(s)	128
SspI	AATATT	1 cut(s)	2836
SspMI	CTAG	4 cut(s)	1136, 1874, 2387, 2558
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	5 cut(s)	99, 555, 1953, 2340, 2412
StyI	CCWWGG	3 cut(s)	600, 768, 1881
TaaI	ACNGT	6 cut(s)	263, 667, 1256, 1741, 2081, 2352
TaiI	ACGT	1 cut(s)	643
TaqI	TCGA	7 cut(s)	51, 93, 907, 1075, 1591, 2649, 2826
TatI	WGTACW	2 cut(s)	1132, 2389
TfiI	GAWTC	8 cut(s)	270, 464, 795, 1004, 1441, 1682, 1930, 2014
TscAI	CASTG	6 cut(s)	553, 670, 1261, 2086, 2324, 2708
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	7 cut(s)	808, 1172, 1400, 1448, 1615, 2580, 2635
Tsp45I	GTSAC	1 cut(s)	16
TspGWI	ACGGA	2 cut(s)	1221, 2167
TspRI	CASTG	6 cut(s)	553, 670, 1261, 2086, 2324, 2708
Tth111I	GACNNNGTC	1 cut(s)	1944
Van91I	CCANNNNNTGG	2 cut(s)	572, 2690
Vha464I	CTTAAG	1 cut(s)	133
VneI	GTGCAC	1 cut(s)	1758
VpaK11BI	GGWCC	3 cut(s)	97, 2599, 2804
VspI	ATTAAT	2 cut(s)	1337, 2666
XagI	CCTNNNNNAGG	2 cut(s)	133, 377
XapI	RAATTY	6 cut(s)	233, 330, 1057, 1068, 1235, 1842
XbaI	TCTAGA	1 cut(s)	2557
XceI	RCATGY	3 cut(s)	656, 973, 1904
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1005
XmnI	GAANNNNTTC	2 cut(s)	1587, 1773
XspI	CTAG	4 cut(s)	1136, 1874, 2387, 2558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.