Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009400.1

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Forward (+)

17654 .. 17946

Gene Structure 293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009400.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 293 bp

atggcagaaagtgcagtcacctttttggttgacaggctcacgacattactcgaagaagaggcggaactcttgtcagggatccgagaaaaggtcgatgacctggttgatgaattggagcgcatcaaggccttcttaagggtagctgatgcaaatgaagacagcaatcctcagctccaagtgcgggttaaacaagtcagagatgtagctcatggaatggaagatgcccttgataaattcaggcttttccattcacacgatcacggtcatggattccgagcttcccttcataagct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

98

Amino Acids

11.19

Weight (kDa)

5.25

Isoelectric Point (pI)

21.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	62, 181
AclWI	GGATC	2 cut(s)	73, 86
AcsI	RAATTY	1 cut(s)	233
AfiI	CCNNNNNNNGG	3 cut(s)	88, 135, 181
AflII	CTTAAG	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	5 cut(s)	143, 172, 206, 278, 292
AluI	AGCT	5 cut(s)	143, 172, 206, 278, 292
AlwI	GGATC	2 cut(s)	73, 86
AoxI	GGCC	1 cut(s)	126
ApoI	RAATTY	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	10
BamHI	GGATCC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	101
BfrI	CTTAAG	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	3 cut(s)	129, 136, 211
BpiI	GAAGAC	1 cut(s)	162
Bpu10I	CCTNAGC	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 135, 181
BseBI	CCWGG	1 cut(s)	101
BseLI	CCNNNNNNNGG	3 cut(s)	88, 135, 181
BseMII	CTCAG	1 cut(s)	182
BsgI	GTGCAG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	128
BslI	CCNNNNNNNGG	3 cut(s)	88, 135, 181
BsnI	GGCC	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	78, 256
BspACI	CCGC	2 cut(s)	62, 181
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	80
BspPI	GGATC	2 cut(s)	73, 86
BspTI	CTTAAG	1 cut(s)	133
BssMI	GATC	2 cut(s)	78, 256
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	133
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	168
BstENI	CCTNNNNNAGG	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	2 cut(s)	81, 259
BstMBI	GATC	2 cut(s)	78, 256
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 178
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	128
CfoI	GCGC	1 cut(s)	120
CsiI	ACCWGGT	1 cut(s)	99
CviAII	CATG	2 cut(s)	209, 266
CviJI	RGCY	8 cut(s)	37, 128, 143, 172, 206, 241, 278, 292
CviKI_1	RGCY	8 cut(s)	37, 128, 143, 172, 206, 241, 278, 292
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	2 cut(s)	80, 258
DpnII	GATC	2 cut(s)	78, 256
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	77
Eco147I	AGGCCT	1 cut(s)	128
EcoNI	CCTNNNNNAGG	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	99
FaeI	CATG	2 cut(s)	212, 269
FaiI	YATR	3 cut(s)	210, 267, 288
FalI	AAGNNNNNCTT	4 cut(s)	116, 148, 210, 242
FatI	CATG	2 cut(s)	208, 265
FauI	CCCGC	1 cut(s)	174
GlaI	GCGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	212, 269
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	1 cut(s)	270
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	3 cut(s)	83, 197, 275
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	139, 293
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	2 cut(s)	14, 149
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 178
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	212, 269
HspAI	GCGC	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	78, 256
LmnI	GCTCC	2 cut(s)	115, 177
LpnPI	CCDG	5 cut(s)	19, 60, 86, 113, 223
LweI	GCATC	3 cut(s)	129, 136, 211
MabI	ACCWGGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	2 cut(s)	80, 258
MboI	GATC	2 cut(s)	78, 256
MboII	GAAGA	4 cut(s)	65, 68, 167, 230
MflI	RGATCY	1 cut(s)	78
MluCI	AATT	2 cut(s)	110, 233
MnlI	CCTC	2 cut(s)	52, 177
MseI	TTAA	2 cut(s)	134, 186
MslI	CAYNNNNRTG	1 cut(s)	264
MspCI	CTTAAG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	11, 178
NdeII	GATC	2 cut(s)	78, 256
NlaIII	CATG	2 cut(s)	212, 269
NlaIV	GGNNCC	1 cut(s)	80
NmuCI	GTSAC	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	134, 186
Sau3AI	GATC	2 cut(s)	78, 256
ScrFI	CCNGG	1 cut(s)	101
SetI	ASST	7 cut(s)	23, 93, 102, 145, 174, 208, 280
SexAI	ACCWGGT	1 cut(s)	99
SfaNI	GCATC	3 cut(s)	129, 136, 211
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	2 cut(s)	110, 233
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	2 cut(s)	62, 181
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	263
TaqI	TCGA	2 cut(s)	51, 93
TasI	AATT	2 cut(s)	110, 233
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	2 cut(s)	134, 186
Tru9I	TTAA	2 cut(s)	134, 186
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	3 cut(s)	123, 168, 275
Vha464I	CTTAAG	1 cut(s)	133
XagI	CCTNNNNNAGG	1 cut(s)	133
XapI	RAATTY	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.