Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Reverse (-)

27113053 .. 27113609

Gene Structure 557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g25280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCAGAAAGTGTTGTCACCTTCTTGCTCAACAGTCTCACCTCCTTGATCGAACAGGAGGAGAGACTATTCTCAGGGGTCCGAGCACAGATCGAGGATATCATCGACGAGTTGGAGCGCATTAAAGCCTTCTTAAGGGTTGCTGACACAGAGGAAGACGAAGACCCTCAACTCAAAGTGTGGGTTAAACAAGTCAGAGACGTGGCTTATGAGATTGAAGATGTGCTTGACAAATTCAGGCTCTCTCATTCACATGTTCACAGGCACGGATTCCATCTTGATGTTGACCCTTGCTCAAGCAAGGTTCGGAAGCCTCAGATCAGTCAAGGTGATGCCCTTTTGCTAAAAGAGGCTGATCTCGTGGCAATCATGACAGGTGAATCTGGACGCCAAGCAGTATCGGTGGTTGGGATTGTTGGAGGAAGATGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

145

Amino Acids

16.26

Weight (kDa)

4.98

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	388
AfiI	CCNNNNNNNGG	1 cut(s)	135
AflII	CTTAAG	1 cut(s)	133
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	1 cut(s)	218
AjiI	CACGTC	1 cut(s)	202
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	3 cut(s)	41, 58, 192
ApoI	RAATTY	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	4 cut(s)	10, 31, 341, 389
AvaII	GGWCC	1 cut(s)	79
BauI	CACGAG	1 cut(s)	359
BbsI	GAAGAC	2 cut(s)	162, 168
Bbv12I	GWGCWC	1 cut(s)	88
BccI	CCATC	2 cut(s)	282, 420
BcoDI	GTCTC	3 cut(s)	41, 58, 192
BfrI	CTTAAG	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	79
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	80
BmsI	GCATC	1 cut(s)	322
BpiI	GAAGAC	2 cut(s)	162, 168
BpuEI	CTTGAG	1 cut(s)	280
BsaHI	GRCGYC	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	87, 329
BseRI	GAGGAG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	3 cut(s)	41, 58, 192
BsmBI	CGTCTC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	4 cut(s)	48, 90, 318, 355
BspCNI	CTCAG	2 cut(s)	86, 328
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	80
BspTI	CTTAAG	1 cut(s)	133
BssMI	GATC	4 cut(s)	48, 90, 318, 355
BssNI	GRCGYC	1 cut(s)	388
BssSI	CACGAG	1 cut(s)	359
Bst2BI	CACGAG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	388
BstAFI	CTTAAG	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	73, 315
BstENI	CCTNNNNNAGG	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	4 cut(s)	51, 93, 321, 358
BstMAI	GTCTC	3 cut(s)	41, 58, 192
BstMBI	GATC	4 cut(s)	48, 90, 318, 355
BstNSI	RCATGY	1 cut(s)	257
BstV2I	GAAGAC	2 cut(s)	162, 168
BtrI	CACGTC	1 cut(s)	202
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	79
CseI	GACGC	1 cut(s)	396
CviAII	CATG	2 cut(s)	254, 370
CviJI	RGCY	5 cut(s)	128, 206, 241, 313, 353
CviKI_1	RGCY	5 cut(s)	128, 206, 241, 313, 353
DdeI	CTNAG	2 cut(s)	73, 315
DpnI	GATC	4 cut(s)	50, 92, 320, 357
DpnII	GATC	4 cut(s)	48, 90, 318, 355
Eco32I	GATATC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	79
EcoNI	CCTNNNNNAGG	1 cut(s)	133
EcoRV	GATATC	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	192
FaeI	CATG	2 cut(s)	257, 373
FaiI	YATR	4 cut(s)	210, 255, 371, 433
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	2 cut(s)	253, 369
GlaI	GCGC	1 cut(s)	119
HgaI	GACGC	1 cut(s)	396
HhaI	GCGC	1 cut(s)	120
Hin1I	GRCGYC	1 cut(s)	388
Hin1II	CATG	2 cut(s)	257, 373
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	2 cut(s)	270, 380
HphI	GGTGA	4 cut(s)	10, 31, 341, 389
Hpy166II	GTNNAC	2 cut(s)	259, 286
Hpy188I	TCNGA	4 cut(s)	83, 197, 309, 318
Hpy188III	TCNNGA	3 cut(s)	278, 370, 384
Hpy8I	GTNNAC	2 cut(s)	259, 286
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	31, 139
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	201
HpyF3I	CTNAG	2 cut(s)	73, 315
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	388
Hsp92II	CATG	2 cut(s)	257, 373
HspAI	GCGC	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	48, 90, 318, 355
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	6 cut(s)	41, 60, 223, 247, 360, 369
LweI	GCATC	1 cut(s)	322
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	4 cut(s)	50, 92, 320, 357
MboI	GATC	4 cut(s)	48, 90, 318, 355
MboII	GAAGA	4 cut(s)	167, 173, 230, 435
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	1 cut(s)	233
MmeI	TCCRAC	2 cut(s)	93, 397
MnlI	CCTC	8 cut(s)	52, 52, 88, 145, 177, 324, 343, 413
MseI	TTAA	3 cut(s)	123, 134, 186
MslI	CAYNNNNRTG	2 cut(s)	252, 279
MspCI	CTTAAG	1 cut(s)	133
NdeII	GATC	4 cut(s)	48, 90, 318, 355
NlaIII	CATG	2 cut(s)	257, 373
NlaIV	GGNNCC	1 cut(s)	80
NmuCI	GTSAC	1 cut(s)	16
NspI	RCATGY	1 cut(s)	257
PagI	TCATGA	1 cut(s)	369
PciI	ACATGT	1 cut(s)	253
PfeI	GAWTC	2 cut(s)	270, 380
PscI	ACATGT	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	79
RseI	CAYNNNNRTG	2 cut(s)	252, 279
SaqAI	TTAA	3 cut(s)	123, 134, 186
Sau3AI	GATC	4 cut(s)	48, 90, 318, 355
Sau96I	GGNCC	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	6 cut(s)	23, 44, 204, 306, 331, 379
SfaNI	GCATC	1 cut(s)	322
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	2 cut(s)	252, 279
SmlI	CTYRAG	2 cut(s)	133, 295
SmoI	CTYRAG	2 cut(s)	133, 295
Sse9I	AATT	1 cut(s)	233
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	3 cut(s)	51, 93, 105
TasI	AATT	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	270, 380
Tru1I	TTAA	3 cut(s)	123, 134, 186
Tru9I	TTAA	3 cut(s)	123, 134, 186
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspGWI	ACGGA	1 cut(s)	282
Vha464I	CTTAAG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	79
XagI	CCTNNNNNAGG	1 cut(s)	133
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.