Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005246.1

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Reverse (-)

73038 .. 73502

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005246.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atggaagatgccctggataaattcagtctttcctattccaatgaccccctgcgtggctttcgtacttcacttaagaagcttacttgcataataaagaaatggaaagctcaccatgaaattaccgctgatattgaagggctaaactccaaagtcagaagcctcagagagggacgtcacacatgcaatcttgttggtgaagctggctccatctcttctcgttcaattgggcaacgtcagtttggtcaaggggatgccctcttactagaagcagctgatcttatggcaatcagggagcctaaaaaacagctgatcaagttgcttataaagcatgagccaggatgccaggtgttatcagtggttgggatgggaggattggggaaaactacattggtaaagcaagtgtatgaggatcccaaggttaagaaacactttaaggttcacgcctggatcactgtttctcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

154

Amino Acids

17.15

Weight (kDa)

9.62

Isoelectric Point (pI)

22.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	323
AatII	GACGTC	1 cut(s)	175
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	3 cut(s)	404, 417, 455
AcsI	RAATTY	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	172
AfaI	GTAC	1 cut(s)	64
AfiI	CCNNNNNNNGG	2 cut(s)	53, 166
AflII	CTTAAG	1 cut(s)	71
AgsI	TTSAA	2 cut(s)	134, 222
AjnI	CCWGG	4 cut(s)	12, 334, 342, 443
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	5 cut(s)	79, 107, 200, 272, 307
AluI	AGCT	5 cut(s)	79, 107, 200, 272, 307
AlwI	GGATC	3 cut(s)	404, 417, 455
ApeKI	GCWGC	1 cut(s)	269
ApoI	RAATTY	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	101, 206
BamHI	GGATCC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	281
BccI	CCATC	2 cut(s)	215, 358
BciT130I	CCWGG	4 cut(s)	14, 336, 344, 445
BclI	TGATCA	1 cut(s)	309
BfaI	CTAG	1 cut(s)	263
BfrI	CTTAAG	1 cut(s)	71
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	4 cut(s)	14, 336, 344, 445
BmiI	GGNNCC	3 cut(s)	205, 294, 411
BmrFI	CCNGG	4 cut(s)	14, 336, 344, 445
BmsI	GCATC	2 cut(s)	241, 329
BsaHI	GRCGYC	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	12, 414
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 166
BseBI	CCWGG	4 cut(s)	14, 336, 344, 445
BseDI	CCNNGG	2 cut(s)	12, 414
BseGI	GGATG	3 cut(s)	256, 344, 369
BseLI	CCNNNNNNNGG	2 cut(s)	53, 166
BseMII	CTCAG	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	281
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	53, 166
BsmFI	GGGAC	1 cut(s)	183
Bsp143I	GATC	4 cut(s)	274, 309, 409, 447
BspACI	CCGC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	174
BspLI	GGNNCC	3 cut(s)	205, 294, 411
BspPI	GGATC	3 cut(s)	404, 417, 455
BspTI	CTTAAG	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	12, 414
BssMI	GATC	4 cut(s)	274, 309, 409, 447
BssNI	GRCGYC	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	4 cut(s)	14, 336, 344, 445
Bst4CI	ACNGT	1 cut(s)	454
Bst6I	CTCTTC	1 cut(s)	217
BstACI	GRCGYC	1 cut(s)	172
BstAFI	CTTAAG	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	161
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstF5I	GGATG	3 cut(s)	256, 344, 369
BstKTI	GATC	4 cut(s)	277, 312, 412, 450
BstMBI	GATC	4 cut(s)	274, 309, 409, 447
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstNI	CCWGG	4 cut(s)	14, 336, 344, 445
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	4 cut(s)	12, 334, 342, 443
BstV1I	GCAGC	1 cut(s)	281
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BtsCI	GGATG	3 cut(s)	256, 344, 369
BtsIMutI	CAGTG	2 cut(s)	360, 450
Cac8I	GCNNGC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	3 cut(s)	113, 180, 329
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	4 cut(s)	276, 311, 411, 449
DpnII	GATC	4 cut(s)	274, 309, 409, 447
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	414
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoRII	CCWGG	4 cut(s)	12, 334, 342, 443
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	3 cut(s)	116, 183, 332
FaiI	YATR	7 cut(s)	89, 114, 181, 281, 323, 330, 405
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	3 cut(s)	112, 179, 328
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	3 cut(s)	263, 351, 376
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	1 cut(s)	270
Hin1I	GRCGYC	1 cut(s)	172
Hin1II	CATG	3 cut(s)	116, 183, 332
HindIII	AAGCTT	1 cut(s)	77
HphI	GGTGA	2 cut(s)	101, 206
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	2 cut(s)	155, 164
Hpy8I	GTNNAC	1 cut(s)	439
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4IV	ACGT	2 cut(s)	172, 232
HpyCH4V	TGCA	2 cut(s)	87, 183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	2 cut(s)	172, 232
Hsp92I	GRCGYC	1 cut(s)	172
Hsp92II	CATG	3 cut(s)	116, 183, 332
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	4 cut(s)	274, 309, 409, 447
LmnI	GCTCC	2 cut(s)	209, 292
Lsp1109I	GCAGC	1 cut(s)	281
LweI	GCATC	2 cut(s)	241, 329
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	2 cut(s)	172, 232
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	4 cut(s)	276, 311, 411, 449
MboI	GATC	4 cut(s)	274, 309, 409, 447
MboII	GAAGA	2 cut(s)	17, 204
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	1 cut(s)	409
MluCI	AATT	3 cut(s)	20, 117, 222
MnlI	CCTC	5 cut(s)	160, 170, 266, 362, 400
MseI	TTAA	3 cut(s)	72, 420, 432
MspA1I	CMGCKG	3 cut(s)	125, 272, 307
MspCI	CTTAAG	1 cut(s)	71
MspR9I	CCNGG	4 cut(s)	14, 336, 344, 445
MunI	CAATTG	1 cut(s)	222
MvaI	CCWGG	4 cut(s)	14, 336, 344, 445
MwoI	GCNNNNNNNGC	1 cut(s)	325
NdeII	GATC	4 cut(s)	274, 309, 409, 447
NlaIII	CATG	3 cut(s)	116, 183, 332
NlaIV	GGNNCC	3 cut(s)	205, 294, 411
NmuCI	GTSAC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	183
PkrI	GCNGC	1 cut(s)	271
PsiI	TTATAA	1 cut(s)	323
Psp6I	CCWGG	4 cut(s)	12, 334, 342, 443
PspGI	CCWGG	4 cut(s)	12, 334, 342, 443
PspN4I	GGNNCC	3 cut(s)	205, 294, 411
PsuI	RGATCY	1 cut(s)	409
PvuII	CAGCTG	2 cut(s)	272, 307
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	72, 420, 432
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	4 cut(s)	274, 309, 409, 447
ScrFI	CCNGG	4 cut(s)	14, 336, 344, 445
SfaNI	GCATC	2 cut(s)	241, 329
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	3 cut(s)	20, 117, 222
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	4 cut(s)	12, 334, 342, 443
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	1 cut(s)	454
TaiI	ACGT	2 cut(s)	175, 235
TasI	AATT	3 cut(s)	20, 117, 222
Tru1I	TTAA	3 cut(s)	72, 420, 432
Tru9I	TTAA	3 cut(s)	72, 420, 432
TscAI	CASTG	2 cut(s)	360, 457
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	2 cut(s)	360, 457
Vha464I	CTTAAG	1 cut(s)	71
XagI	CCTNNNNNAGG	1 cut(s)	164
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	1 cut(s)	183
XspI	CTAG	1 cut(s)	263
ZraI	GACGTC	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.