Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Forward (+)

10633341 .. 10633865

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0135500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAGTCCTTCCAGCATCCCGGAGGAGAGACATTACTTTAGTTTTAAAGCGTCGCAAGCAGAAGCAAGAAGACCCCCGAGCACGATAATCCCACCGGAAAAGCATCCAATGAAATTAATATTCATGAGGGCAACCGAGATCCATCGTATTGATGATCCAAGCGACATTACTTATGGTGGAACTGTAATCGTATCTGAAGCAAAACTTAATGTCCGTCGCAACTGGATTAGATGCGCTAGACATATGCTTAAGGCTCTTTCGGCCATGTTGGTCCCAGAAGATGAGCAGCGGGTTCTAATTCAGAGAATGTATAAAGAATGTGTACCCCTGTGGGTGACAGACATCCCTATTACTGTGGTCATAGCCGACGTGACTGTGCGCTTCTCTAGCGACTTTAGGAGTACTACTACTATTGCGAGCCTTGATATTGTCTTTGATAGGACAAGGGATTTGAGGGAATTAGAAGAATCCATGGAAAGATATGAGCTAGCCCAAGTTTATTCCTGCAACCAAGTCGTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

174

Amino Acids

20.18

Weight (kDa)

6.52

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	289
AclWI	GGATC	2 cut(s)	133, 149
AcoI	YGGCCR	1 cut(s)	261
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	2 cut(s)	324, 403
AflII	CTTAAG	1 cut(s)	248
AjiI	CACGTC	1 cut(s)	370
AluBI	AGCT	1 cut(s)	487
AluI	AGCT	1 cut(s)	487
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	2 cut(s)	133, 149
Ama87I	CYCGRG	1 cut(s)	76
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	286
ArsI	GACNNNNNNTTYG	2 cut(s)	433, 465
AseI	ATTAAT	1 cut(s)	116
AspLEI	GCGC	2 cut(s)	236, 381
AspS9I	GGNCC	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	346
AsuNHI	GCTAGC	1 cut(s)	487
AvaI	CYCGRG	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	1 cut(s)	150
BcgI	CGANNNNNNTGC	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	3 cut(s)	237, 387, 488
BfrI	CTTAAG	1 cut(s)	248
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
BmcAI	AGTACT	1 cut(s)	403
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	76
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	3 cut(s)	24, 112, 221
BmtI	GCTAGC	1 cut(s)	491
BpiI	GAAGAC	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	471
BsaWI	WCCGGW	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	3 cut(s)	15, 103, 342
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	298
BshFI	GGCC	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	83
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	2 cut(s)	20, 95
BslFI	GGGAC	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	263
BsoBI	CYCGRG	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	138, 154
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	1 cut(s)	289
BspANI	GGCC	1 cut(s)	263
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	273
BspOI	GCTAGC	1 cut(s)	491
BspPI	GGATC	2 cut(s)	133, 149
BspTI	CTTAAG	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	2 cut(s)	138, 154
BssT1I	CCWWGG	1 cut(s)	471
Bst4CI	ACNGT	3 cut(s)	184, 355, 376
BstAFI	CTTAAG	1 cut(s)	248
BstC8I	GCNNGC	3 cut(s)	57, 418, 489
BstDSI	CCRYGG	1 cut(s)	471
BstF5I	GGATG	3 cut(s)	15, 103, 342
BstHHI	GCGC	2 cut(s)	236, 381
BstKTI	GATC	2 cut(s)	141, 157
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	2 cut(s)	138, 154
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 260, 387
BstSCI	CCNGG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	263
BtgI	CCRYGG	1 cut(s)	471
BtrI	CACGTC	1 cut(s)	370
BtsCI	GGATG	3 cut(s)	15, 103, 342
Cac8I	GCNNGC	3 cut(s)	57, 418, 489
CciI	TCATGA	1 cut(s)	123
CfoI	GCGC	2 cut(s)	236, 381
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	323, 402
CviAII	CATG	3 cut(s)	124, 265, 472
CviJI	RGCY	6 cut(s)	254, 263, 365, 420, 487, 491
CviKI_1	RGCY	6 cut(s)	254, 263, 365, 420, 487, 491
CviQI	GTAC	2 cut(s)	323, 402
DpnI	GATC	2 cut(s)	140, 156
DpnII	GATC	2 cut(s)	138, 154
DraI	TTTAAA	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	3 cut(s)	127, 268, 475
FaiI	YATR	9 cut(s)	125, 174, 243, 245, 266, 312, 362, 473, 483
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	3 cut(s)	123, 264, 471
FauI	CCCGC	1 cut(s)	282
FauNDI	CATATG	1 cut(s)	243
Fnu4HI	GCNGC	1 cut(s)	287
FokI	GGATG	3 cut(s)	2, 90, 329
Fsp4HI	GCNGC	1 cut(s)	287
FspBI	CTAG	3 cut(s)	237, 387, 488
GlaI	GCGC	2 cut(s)	235, 380
GluI	GCNGC	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	2 cut(s)	20, 95
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	2 cut(s)	236, 381
Hin1II	CATG	3 cut(s)	127, 268, 475
Hin6I	GCGC	2 cut(s)	234, 379
HinP1I	GCGC	2 cut(s)	234, 379
HinfI	GANTC	2 cut(s)	4, 467
HpaII	CCGG	2 cut(s)	20, 95
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	2 cut(s)	196, 303
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	323
Hpy99I	CGWCG	3 cut(s)	55, 219, 371
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	3 cut(s)	184, 355, 376
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	1 cut(s)	507
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 260, 387
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	3 cut(s)	127, 268, 475
HspAI	GCGC	2 cut(s)	234, 379
Kzo9I	GATC	2 cut(s)	138, 154
LpnPI	CCDG	7 cut(s)	25, 33, 108, 208, 288, 341, 517
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	3 cut(s)	24, 112, 221
MaeI	CTAG	3 cut(s)	237, 387, 488
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	2 cut(s)	334, 370
MalI	GATC	2 cut(s)	140, 156
MboI	GATC	2 cut(s)	138, 154
MboII	GAAGA	3 cut(s)	81, 290, 476
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	3 cut(s)	113, 297, 458
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	3 cut(s)	16, 120, 447
MseI	TTAA	4 cut(s)	45, 116, 207, 249
MspA1I	CMGCKG	1 cut(s)	289
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	2 cut(s)	20, 95
MspR9I	CCNGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	3 cut(s)	56, 260, 387
NciI	CCSGG	1 cut(s)	20
NcoI	CCATGG	1 cut(s)	471
NdeI	CATATG	1 cut(s)	243
NdeII	GATC	2 cut(s)	138, 154
NheI	GCTAGC	1 cut(s)	487
NlaIII	CATG	3 cut(s)	127, 268, 475
NlaIV	GGNNCC	1 cut(s)	273
NmuCI	GTSAC	2 cut(s)	334, 370
PagI	TCATGA	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	467
PfoI	TCCNGGA	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	288
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PshBI	ATTAAT	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	138
RsaI	GTAC	2 cut(s)	324, 403
RsaNI	GTAC	2 cut(s)	323, 402
SaqAI	TTAA	4 cut(s)	45, 116, 207, 249
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	2 cut(s)	138, 154
Sau96I	GGNCC	1 cut(s)	271
ScaI	AGTACT	1 cut(s)	403
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	2 cut(s)	372, 489
SfaNI	GCATC	3 cut(s)	24, 112, 221
SinI	GGWCC	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	3 cut(s)	113, 297, 458
SsiI	CCGC	1 cut(s)	289
SspI	AATATT	1 cut(s)	120
SspMI	CTAG	3 cut(s)	237, 387, 488
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	3 cut(s)	184, 355, 376
TaiI	ACGT	1 cut(s)	372
TasI	AATT	3 cut(s)	113, 297, 458
TatI	WGTACW	1 cut(s)	401
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	4 cut(s)	45, 116, 207, 249
Tru9I	TTAA	4 cut(s)	45, 116, 207, 249
TseFI	GTSAC	2 cut(s)	334, 370
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	2 cut(s)	334, 370
TspDTI	ATGAA	2 cut(s)	112, 125
TspGWI	ACGGA	1 cut(s)	203
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	271
VspI	ATTAAT	1 cut(s)	116
XspI	CTAG	3 cut(s)	237, 387, 488
ZrmI	AGTACT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.