Rmu_sc0005770.1_g000019

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005770.1
Physical Location & Seq
Forward (+)
48228 .. 49379
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005770.1_g000019.1.cds

Sequence Viewer

Length: 1152 bp
atggcagaaagtgtagtcaactttttggttgacaggctcacgacattactagaagaagaggcgaaactattgtcagggatccgagaacaggtcgacgacttggttgatgaattggagcgcatcaaagccttcttaagggtagctgatgcaaaggaagacagcaatcctcagctcaaagtgtgggtaaaacaagtcagagatgtagctcatgaaatggaggatgcccttgataaattcaggcttttccattcacacgatcacggccatggattccgagcttcccttcataagctttcttgcatcatcaagaaatggaaagctcaccatcaaatttctgatgatattcaaagaataaattcaaaagtgaaaagcctctccgagggacatgagagatatacactcgttgaccaagctggctccagctctgctcggctagttcagcaccacaaatttggtcaagagaaagagcacggtacaatgtggtctgagaaagttcgacgactatcaatagttaacacactgcagaatgcacatcaaaagaggacaccgtctcaacttcgttctttgctcgtttttggggtagaagattcacttactgattttcccataccaaaattgtttcctacaggtgttcagttgcttacagtattagacttacaaggtgcacatctggatatgtttccaagagaggttgtcaagcttcttcttctcaggtatcttagcttgaggcatacaaaggtgaaacaaattccaggctccatcaagaagctacaaaacctagagaccttggatcttaaacactcgcaagttgttgaattaccttctgagattttgaatctcaagcgacttcgtcatctcctggtgtatcgttatgaggttgagtcatatgcacgcttcaatgccagaaaaggagttaaggtccctgcaggaatatgtggtttaattgcaattgctccaaaagctttgctttatagaggcaaatcaagacactggtgctttaatggcagagctcgggagaatgaaccaactaaggaggttaggcattttcaagttgagaaaagaagatggggtcaccttatgttcgtccgtccaaaatatgaccaatcttcgctcgttctctgtatcttcaacagagaaggacaagataattga

Protein Analysis

383

Amino Acids

44.36

Weight (kDa)

9.59

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000482)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica MD06G1024000.v1.1
prunus_persica Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis pycom16g25280
rosa_chinensis RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii Rroxscaffold_3G00246720
rosa_rugosa Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 93
AclWI GGATC 3 cut(s) 73, 86, 798
AcoI YGGCCR 1 cut(s) 262
AcsI RAATTY 5 cut(s) 233, 330, 355, 449, 747
AfaI GTAC 1 cut(s) 475
AfiI CCNNNNNNNGG 3 cut(s) 88, 135, 379
AflII CTTAAG 1 cut(s) 133
AgsI TTSAA 7 cut(s) 347, 360, 815, 835, 898, 1049, 1129
AjnI CCWGG 2 cut(s) 751, 858
Alw21I GWGCWC 3 cut(s) 471, 667, 1012
Alw26I GTCTC 2 cut(s) 555, 776
Alw44I GTGCAC 1 cut(s) 663
AlwI GGATC 3 cut(s) 73, 86, 798
Ama87I CYCGRG 1 cut(s) 1011
AoxI GGCC 1 cut(s) 262
ApaLI GTGCAC 1 cut(s) 663
ApoI RAATTY 5 cut(s) 233, 330, 355, 449, 747
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
Asp700I GAANNNNTTC 1 cut(s) 355
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 919
AsuHPI GGTGA 3 cut(s) 314, 751, 1064
AvaI CYCGRG 1 cut(s) 1011
AvaII GGWCC 1 cut(s) 919
BaeGI GKGCMC 1 cut(s) 667
BamHI GGATCC 1 cut(s) 78
BanII GRGCYC 1 cut(s) 1012
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 3 cut(s) 471, 667, 1012
BbvCI CCTCAGC 1 cut(s) 168
BccI CCATC 3 cut(s) 333, 767, 1059
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 2 cut(s) 753, 860
BcoDI GTCTC 2 cut(s) 555, 776
BfaI CTAG 3 cut(s) 50, 434, 779
BfmI CTRYAG 3 cut(s) 521, 624, 924
BfrI CTTAAG 1 cut(s) 133
Bme1390I CCNGG 2 cut(s) 753, 860
Bme18I GGWCC 1 cut(s) 919
BmeT110I CYCGRG 1 cut(s) 1011
BmgT120I GGNCC 1 cut(s) 919
BmiI GGNNCC 4 cut(s) 80, 418, 757, 921
BmrFI CCNGG 2 cut(s) 753, 860
BmsI GCATC 4 cut(s) 129, 136, 211, 309
BpiI GAAGAC 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 403
Bpu10I CCTNAGC 1 cut(s) 168
BpuEI CTTGAG 2 cut(s) 745, 824
BsaI GGTCTC 1 cut(s) 776
BsaJI CCNNGG 3 cut(s) 265, 378, 786
BsaXI ACNNNNNCTCC 2 cut(s) 903, 933
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 135, 379
Bse1I ACTGG 1 cut(s) 995
BseBI CCWGG 2 cut(s) 753, 860
BseDI CCNNGG 3 cut(s) 265, 378, 786
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 3 cut(s) 88, 135, 379
BseMII CTCAG 4 cut(s) 182, 477, 724, 816
BseNI ACTGG 1 cut(s) 995
BseSI GKGCMC 1 cut(s) 667
BshFI GGCC 1 cut(s) 264
BsiHKAI GWGCWC 3 cut(s) 471, 667, 1012
BsiHKCI CYCGRG 1 cut(s) 1011
BslFI GGGAC 2 cut(s) 396, 905
BslI CCNNNNNNNGG 3 cut(s) 88, 135, 379
BsmAI GTCTC 2 cut(s) 555, 776
BsmBI CGTCTC 1 cut(s) 555
BsmFI GGGAC 2 cut(s) 396, 905
BsmI GAATGC 1 cut(s) 532
BsnI GGCC 1 cut(s) 264
Bso31I GGTCTC 1 cut(s) 776
BsoBI CYCGRG 1 cut(s) 1011
Bsp1286I GDGCHC 3 cut(s) 471, 667, 1012
Bsp143I GATC 3 cut(s) 78, 256, 790
Bsp19I CCATGG 1 cut(s) 265
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 4 cut(s) 181, 478, 723, 817
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 4 cut(s) 80, 418, 757, 921
BspMAI CTGCAG 2 cut(s) 525, 928
BspPI GGATC 3 cut(s) 73, 86, 798
BspTI CTTAAG 1 cut(s) 133
BspTNI GGTCTC 1 cut(s) 776
BsrI ACTGG 1 cut(s) 995
BssECI CCNNGG 3 cut(s) 265, 378, 786
BssMI GATC 3 cut(s) 78, 256, 790
BssT1I CCWWGG 2 cut(s) 265, 786
Bst2UI CCWGG 2 cut(s) 753, 860
Bst4CI ACNGT 3 cut(s) 473, 549, 646
Bst6I CTCTTC 1 cut(s) 51
BstAFI CTTAAG 1 cut(s) 133
BstC8I GCNNGC 2 cut(s) 415, 892
BstDEI CTNAG 6 cut(s) 168, 486, 710, 719, 825, 1029
BstDSI CCRYGG 1 cut(s) 265
BstEII GGTNACC 1 cut(s) 1070
BstENI CCTNNNNNAGG 2 cut(s) 133, 377
BstF5I GGATG 1 cut(s) 226
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 3 cut(s) 81, 259, 793
BstMAI GTCTC 2 cut(s) 555, 776
BstMBI GATC 3 cut(s) 78, 256, 790
BstMWI GCNNNNNNNGC 3 cut(s) 439, 959, 1002
BstNI CCWGG 2 cut(s) 753, 860
BstPI GGTNACC 1 cut(s) 1070
BstSCI CCNGG 2 cut(s) 751, 858
BstSFI CTRYAG 3 cut(s) 521, 624, 924
BstSLI GKGCMC 1 cut(s) 667
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 2 cut(s) 78, 790
BstXI CCANNNNNNTGG 1 cut(s) 452
BstYI RGATCY 2 cut(s) 78, 790
BsuRI GGCC 1 cut(s) 264
BtgI CCRYGG 1 cut(s) 265
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 518
BtsIMutI CAGTG 2 cut(s) 518, 988
Cac8I GCNNGC 2 cut(s) 415, 892
CciI TCATGA 1 cut(s) 208
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 919
Csp6I GTAC 1 cut(s) 474
CviAII CATG 3 cut(s) 209, 266, 386
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 6 cut(s) 168, 486, 710, 719, 825, 1029
DpnI GATC 3 cut(s) 80, 258, 792
DpnII GATC 3 cut(s) 78, 256, 790
EaeI YGGCCR 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 1010
Eco130I CCWWGG 2 cut(s) 265, 786
Eco24I GRGCYC 1 cut(s) 1012
Eco31I GGTCTC 1 cut(s) 776
Eco47I GGWCC 1 cut(s) 919
Eco53kI GAGCTC 1 cut(s) 1010
Eco88I CYCGRG 1 cut(s) 1011
Eco91I GGTNACC 1 cut(s) 1070
EcoICRI GAGCTC 1 cut(s) 1010
EcoNI CCTNNNNNAGG 2 cut(s) 133, 377
EcoO109I RGGNCCY 1 cut(s) 919
EcoO65I GGTNACC 1 cut(s) 1070
EcoRII CCWGG 2 cut(s) 751, 858
EcoT14I CCWWGG 2 cut(s) 265, 786
EcoT38I GRGCYC 1 cut(s) 1012
ErhI CCWWGG 2 cut(s) 265, 786
Esp3I CGTCTC 1 cut(s) 555
FaeI CATG 3 cut(s) 212, 269, 389
FalI AAGNNNNNCTT 4 cut(s) 576, 608, 951, 983
FaqI GGGAC 2 cut(s) 396, 905
FatI CATG 3 cut(s) 208, 265, 385
FauNDI CATATG 1 cut(s) 886
FblI GTMKAC 1 cut(s) 93
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 1012
FspBI CTAG 3 cut(s) 50, 434, 779
GlaI GCGC 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 403
HaeIII GGCC 1 cut(s) 264
HhaI GCGC 1 cut(s) 120
Hin1II CATG 3 cut(s) 212, 269, 389
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HincII GTYRAC 5 cut(s) 19, 31, 94, 406, 514
HindII GTYRAC 5 cut(s) 19, 31, 94, 406, 514
HindIII AAGCTT 3 cut(s) 290, 698, 960
HinfI GANTC 4 cut(s) 270, 587, 835, 881
HpaI GTTAAC 1 cut(s) 514
HphI GGTGA 3 cut(s) 314, 751, 1064
Hpy166II GTNNAC 6 cut(s) 19, 31, 94, 406, 514, 665
Hpy188I TCNGA 7 cut(s) 83, 197, 275, 337, 379, 487, 826
Hpy188III TCNNGA 8 cut(s) 40, 209, 307, 458, 671, 763, 984, 1013
Hpy8I GTNNAC 6 cut(s) 19, 31, 94, 406, 514, 665
Hpy99I CGWCG 2 cut(s) 98, 501
HpyAV CCTTC 4 cut(s) 139, 293, 831, 1130
HpyCH4III ACNGT 3 cut(s) 473, 549, 646
HpyCH4V TGCA 8 cut(s) 149, 300, 523, 530, 665, 890, 926, 947
HpyF10VI GCNNNNNNNGC 3 cut(s) 439, 959, 1002
HpyF3I CTNAG 6 cut(s) 168, 486, 710, 719, 825, 1029
Hsp92II CATG 3 cut(s) 212, 269, 389
HspAI GCGC 1 cut(s) 118
KspAI GTTAAC 1 cut(s) 514
Kzo9I GATC 3 cut(s) 78, 256, 790
LmnI GCTCC 4 cut(s) 115, 422, 761, 958
LweI GCATC 4 cut(s) 129, 136, 211, 309
MaeI CTAG 3 cut(s) 50, 434, 779
MaeIII GTNAC 1 cut(s) 1070
MalI GATC 3 cut(s) 80, 258, 792
MboI GATC 3 cut(s) 78, 256, 790
MboII GAAGA 9 cut(s) 65, 68, 167, 596, 695, 698, 1074, 1098, 1117
MfeI CAATTG 1 cut(s) 948
MflI RGATCY 2 cut(s) 78, 790
MhlI GDGCHC 3 cut(s) 471, 667, 1012
MlyI GAGTC 1 cut(s) 890
MroXI GAANNNNTTC 1 cut(s) 355
MseI TTAA 6 cut(s) 134, 513, 795, 915, 941, 999
MslI CAYNNNNRTG 1 cut(s) 264
MspCI CTTAAG 1 cut(s) 133
MspR9I CCNGG 2 cut(s) 753, 860
MunI CAATTG 1 cut(s) 948
Mva1269I GAATGC 1 cut(s) 532
MvaI CCWGG 2 cut(s) 753, 860
MwoI GCNNNNNNNGC 3 cut(s) 439, 959, 1002
NcoI CCATGG 1 cut(s) 265
NdeI CATATG 1 cut(s) 886
NdeII GATC 3 cut(s) 78, 256, 790
NlaIII CATG 3 cut(s) 212, 269, 389
NlaIV GGNNCC 4 cut(s) 80, 418, 757, 921
NmeAIII GCCGAG 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 1070
PagI TCATGA 1 cut(s) 208
PctI GAATGC 1 cut(s) 532
PdmI GAANNNNTTC 1 cut(s) 355
PfeI GAWTC 3 cut(s) 270, 587, 835
PflFI GACNNNGTC 2 cut(s) 547, 849
PleI GAGTC 1 cut(s) 889
PpsI GAGTC 1 cut(s) 889
PpuMI RGGWCCY 1 cut(s) 919
Psp124BI GAGCTC 1 cut(s) 1012
Psp5II RGGWCCY 1 cut(s) 919
Psp6I CCWGG 2 cut(s) 751, 858
PspEI GGTNACC 1 cut(s) 1070
PspGI CCWGG 2 cut(s) 751, 858
PspN4I GGNNCC 4 cut(s) 80, 418, 757, 921
PspPI GGNCC 1 cut(s) 919
PspPPI RGGWCCY 1 cut(s) 919
PstI CTGCAG 2 cut(s) 525, 928
PsuI RGATCY 2 cut(s) 78, 790
PsyI GACNNNGTC 2 cut(s) 547, 849
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
RseI CAYNNNNRTG 1 cut(s) 264
SacI GAGCTC 1 cut(s) 1012
SalI GTCGAC 1 cut(s) 92
SaqAI TTAA 6 cut(s) 134, 513, 795, 915, 941, 999
Sau3AI GATC 3 cut(s) 78, 256, 790
Sau96I GGNCC 1 cut(s) 919
SbfI CCTGCAGG 1 cut(s) 928
SchI GAGTC 1 cut(s) 890
ScrFI CCNGG 2 cut(s) 753, 860
SdaI CCTGCAGG 1 cut(s) 928
SduI GDGCHC 3 cut(s) 471, 667, 1012
SfaNI GCATC 4 cut(s) 129, 136, 211, 309
SfcI CTRYAG 3 cut(s) 521, 624, 924
SinI GGWCC 1 cut(s) 919
SmiMI CAYNNNNRTG 1 cut(s) 264
SmlI CTYRAG 3 cut(s) 133, 724, 839
SmoI CTYRAG 3 cut(s) 133, 724, 839
Sse8387I CCTGCAGG 1 cut(s) 928
SspMI CTAG 3 cut(s) 50, 434, 779
SstI GAGCTC 1 cut(s) 1012
StyD4I CCNGG 2 cut(s) 751, 858
StyI CCWWGG 2 cut(s) 265, 786
TaaI ACNGT 3 cut(s) 473, 549, 646
TaqI TCGA 2 cut(s) 93, 496
TfiI GAWTC 3 cut(s) 270, 587, 835
Tru1I TTAA 6 cut(s) 134, 513, 795, 915, 941, 999
Tru9I TTAA 6 cut(s) 134, 513, 795, 915, 941, 999
TscAI CASTG 2 cut(s) 525, 995
TseFI GTSAC 1 cut(s) 1070
Tsp45I GTSAC 1 cut(s) 1070
TspDTI ATGAA 4 cut(s) 123, 225, 275, 1035
TspGWI ACGGA 1 cut(s) 1076
TspRI CASTG 2 cut(s) 525, 995
Tth111I GACNNNGTC 2 cut(s) 547, 849
Vha464I CTTAAG 1 cut(s) 133
VneI GTGCAC 1 cut(s) 663
VpaK11BI GGWCC 1 cut(s) 919
XagI CCTNNNNNAGG 2 cut(s) 133, 377
XapI RAATTY 5 cut(s) 233, 330, 355, 449, 747
XmiI GTMKAC 1 cut(s) 93
XmnI GAANNNNTTC 1 cut(s) 355
XspI CTAG 3 cut(s) 50, 434, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.