Rh7DG275100

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000482
Physical Location & Seq
Reverse (-)
29590678 .. 29593812
3135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG275100.1

Sequence Viewer

Length: 2850 bp
ATGGCAGAAAGTGCAGTCACCTTTTTGGTTGACAGGCTCACGACATTACTAGAAGAAGAGGCGAAACTATTGTCAGGGATCCGAGAACAGGTCGAGGACCTGGTTGATGAATTGGAGCGCATCAAGGCCTTCTTAAGGGTAGCTGATGCAAAGGAAGACAGCAATCCTCAGCTCAAAGTGTGGGTAAAACAAGTCAGAGATGTAGCTCATGAAATGGAGGATGCCCTTGATAAATTCAGGCTAATCCATTCACACGATCACGGCCATGGATTCCGAGCTTCCCTTCATAAGCTTTCTTGCATCATCAAGAAATGGAAAGCTCATCATCAAATTTCTGATGATATTCAAAGAATAAACTCAAAAGTGAAAAGCCTCTCCAAGGGACATGAGAGATATACACTCGTTGACCAAGCTGGCTCCAGCTCTGTTCGGCTAATTCAGCACAACAAATTTGGTCAAGGGGATGCCCTTTTACTGGAAGAGGCTGATCTTGTGGCAATTGGCGAGCGCAAAAAGCAATTGATTGAGTTGCTTATGAAGGAAGACTCTGGACGCCAGGTGGTTCCAATAGTTGGGATGGGAGGACTGGGGAAAACTACCTTGGTAAAGCAAGTGTACGAGGATCCAAAAGTTCAGAAACGTTTCAAGGTACATGCTTGGATCACTGTTTCTCGATCATTCAAGATAAGTCAGCTCCTAAGACACATGATCAATAAAATCTTCAAAGTTATCAGGAAACCAGTTCCTGAAGATGAAGAAGTTGAAACCATGGATGACAACCAGCTAAGAGAGAGGATTAAAAAGTTGCTGCAGAATAGTAGGTACCTGATTGTTCTGGATGATATATGGCATATACCCGACTGGGAGGCCATCAATCATGCAATGCCAAACAACAATCGTGGTAGTCGAGTAATGCTCACTACTCGCAATGTTAATGTAGCCTCTGCCTCTTGCTTGGGGAACCATGACATGTTCTACCGTTTAGAGCCCTTATCCCCAGAAGACTCATGGACTCTGTTCTGCAGGAAGACATTTCAAGGGAACACATGCCTTCCAAATTTGGAGGAAATTTGTCGATCCATCCTGATGAAATGCGGGGGACTGCCCCTTGCAATTGTGGCCATCAGCGCTGTACTAGCTTTAAAAGACAAGAGAAATGTGGATGATTGGGCTGCTGTTTCTGGCAGTATTGGAGCTGAAATAGAAGGAAATGATCAACTTGACAACATGAAAAAATTGCTGTATCTCAGTTACAGTGATTTACCATACCATCTGAAATCTTGTTTCTTGTATCTGAGCATCTTTCCTGATCTCTACAAAATTGAGCATATGAGATTGATTCGGTTATGGTTAGCTGAAGGATTTGTTATTGGAAAAGAGGGAAGGACACCAGAAGAAGTTGCAGAGAGTTACCTTAGAGAGTTATTAGACAGAAGTTTGATTCAAGCAGCAGAAACATCAACTGATGGGAGAGTTAAATCATATCGCATCCATGATCTTTTACGGGAGATTGTCATTTTGAAGTCTAGAGAGCAAAATTTTGCAGCAATAGAAAAAGAGCACGGTACAATGTGGTCTGAGAAAGTTCGACGACTATCAATAGTTAACACACTGCAGAATGTACATCAAAAGAGGACACCGTCTCAACTTCGTTCTTTGCTCGTTTTTGGGGTAGAAGATTCACTTACTGATTTTCCCATACCAAAATTGTTTCCTACAGGTGTTCAGCTGCTTACAGTATTAGACTTACAAGGTGCACATCTGGATATGTTTCCAAGAGTGGTTGTCAAGCTTCTTCTTCTCAGGTATCTTAGCTTGAGGCATACAAAGGTGAAACAAATTCCAGGCTCCATCAAGAAGCTACAAAACCTAGAGACCTTGGATCTTAAACACTCGCAAGTTGTTGAATTACCTTCTGAGATTTTGAATCTCAAGCGACTTCGTCATCTCCTGGTGTATCGTTATGAGGTTGAGTCGTACGCACGTTTCAATGCCAGAAAAGGAGTTAAGGTCCCTGCAGGAATATGTGGCTTGCAATTGCTCCAAAAGCTCTGCTTTATAGAGGCAAATCAAGACAATGGTGCTTTAATGGCAGAGCTCGGGAGAATGAACCAACTAAGGAGGTTAGGCATTTTCAAGTTGAGAAAAGAAGATGGGGTCACCTTATGCTCGTCCGTCCAAAATATGACTAATCTTCGCTCGTTCTCTGTATCTTCAACAGAGAAGGACAAGATAATTGATCTTAGCCACATTTCTTGTGCTCCTCCATTTCTTCAGCGACTCTACTTGACAGGTCGTTTAGAAAAGTTACCACACTGGATTTCTTCTCTTCAAAACCTGGTCAGACTGTTTCTAAAATGGAGTCGGTTGAAGGAGGATCCTCTAGTACGTCTTCAGGGTTTGCCAAACCTGGTACACCTTGAACTGCTACAAGTTTATGATGGAGGAAGCTTGCATTTTGAGGCAGGAGGGTTTCCAAGTCTGAAGTTATTAGGTATTGATAAATTGGATGAGCTACAATCAGTAACTATAGAGGAGGGTGCAATGCCTTGTCTAGAAAAGCTAATTATCCAGCGGTGTAAATTGTTGAAGAAGGTCCCTTCTGGCATTGAACATTTAACCAATTTAAAGCTGCTTGAATTTTTCGATATGCCAGATGAATTAATCATGCCACTACATCCAGATGGTGGAGAAGATCATTGGAAAGTTGCTCATGTTCCAGCAGTTTATTATTCCTATTGGAGAGGTGGGGGTTGGGACGTCTATTCATTAGTCAATGAAGGGGAGAGTTCTAATTCGGGTACTTCTGCTGTGAGGAGGCTTGAACGTAGTATTCTGTGGAAGGTGTAG

Protein Analysis

949

Amino Acids

108.5

Weight (kDa)

8.78

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 87 2.9e-25 Rx N-terminal domain
NB-ARC PF00931 170 - 348 1.5e-45 NB-ARC domain
WHD_DRP PF23559 434 - 505 1.1e-21 Disease resistance protein Winged helix domain
LRR_14 PF23598 549 - 879 3.4e-47 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000482)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica MD06G1024000.v1.1
prunus_persica Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis pycom16g25280
rosa_chinensis RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii Rroxscaffold_3G00246720
rosa_rugosa Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2763
Acc65I GGTACC 1 cut(s) 822
AccB1I GGYRCC 1 cut(s) 822
AccB7I CCANNNNNTGG 2 cut(s) 572, 2687
AciI CCGC 2 cut(s) 1095, 2575
AclI AACGTT 1 cut(s) 640
AclWI GGATC 9 cut(s) 73, 86, 617, 630, 668, 1071, 1890, 2372, 2385
AcoI YGGCCR 2 cut(s) 262, 1119
AcsI RAATTY 8 cut(s) 233, 330, 449, 1057, 1068, 1537, 1839, 2639
AcuI CTGAAG 5 cut(s) 768, 1377, 2258, 2378, 2504
AcyI GRCGYC 2 cut(s) 553, 2760
AfeI AGCGCT 1 cut(s) 1129
AfiI CCNNNNNNNGG 6 cut(s) 88, 135, 379, 475, 572, 2687
AflII CTTAAG 1 cut(s) 133
AflIII ACRYGT 1 cut(s) 969
AjnI CCWGG 6 cut(s) 99, 555, 1843, 1950, 2337, 2409
AjuI GAANNNNNNNTTGG 2 cut(s) 584, 616
Alw21I GWGCWC 4 cut(s) 1563, 1759, 2100, 2263
Alw26I GTCTC 2 cut(s) 1647, 1868
Alw44I GTGCAC 1 cut(s) 1755
AlwI GGATC 9 cut(s) 73, 86, 617, 630, 668, 1071, 1890, 2372, 2385
AlwNI CAGNNNCTG 1 cut(s) 746
Ama87I CYCGRG 1 cut(s) 2099
Aor51HI AGCGCT 1 cut(s) 1129
AoxI GGCC 4 cut(s) 126, 262, 867, 1119
ApaLI GTGCAC 1 cut(s) 1755
ApeKI GCWGC 6 cut(s) 808, 1172, 1448, 1544, 1729, 2632
ApoI RAATTY 8 cut(s) 233, 330, 449, 1057, 1068, 1537, 1839, 2639
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AseI ATTAAT 1 cut(s) 2663
Asp700I GAANNNNTTC 1 cut(s) 641
Asp718I GGTACC 1 cut(s) 822
AspLEI GCGC 3 cut(s) 120, 510, 1130
AspS9I GGNCC 3 cut(s) 97, 2011, 2596
AsuHPI GGTGA 3 cut(s) 10, 1843, 2152
AvaI CYCGRG 1 cut(s) 2099
AvaII GGWCC 3 cut(s) 97, 2011, 2596
BaeGI GKGCMC 1 cut(s) 1759
BalI TGGCCA 1 cut(s) 1121
BamHI GGATCC 3 cut(s) 78, 622, 2377
BanI GGYRCC 1 cut(s) 822
BanII GRGCYC 2 cut(s) 990, 2100
BbsI GAAGAC 5 cut(s) 162, 549, 1008, 1034, 2384
Bbv12I GWGCWC 4 cut(s) 1563, 1759, 2100, 2263
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 6 cut(s) 795, 1159, 1460, 1556, 1716, 2619
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 6 cut(s) 101, 557, 1845, 1952, 2339, 2411
BclI TGATCA 2 cut(s) 708, 1213
BcoDI GTCTC 2 cut(s) 1647, 1868
BfaI CTAG 6 cut(s) 50, 1136, 1527, 1871, 2384, 2555
BfmI CTRYAG 6 cut(s) 809, 1021, 1613, 1716, 2016, 2529
BfoI RGCGCY 1 cut(s) 1131
BfrI CTTAAG 1 cut(s) 133
BisI GCNGC 6 cut(s) 809, 1173, 1449, 1545, 1730, 2633
BlsI GCNGC 6 cut(s) 810, 1174, 1450, 1546, 1731, 2634
Bme1390I CCNGG 6 cut(s) 101, 557, 1845, 1952, 2339, 2411
Bme18I GGWCC 3 cut(s) 97, 2011, 2596
BmeT110I CYCGRG 1 cut(s) 2099
BmgT120I GGNCC 3 cut(s) 97, 2011, 2596
BmrFI CCNGG 6 cut(s) 101, 557, 1845, 1952, 2339, 2411
BmrI ACTGGG 2 cut(s) 596, 871
BmsI GCATC 7 cut(s) 129, 136, 211, 309, 454, 1308, 1497
BmuI ACTGGG 2 cut(s) 596, 871
BpiI GAAGAC 5 cut(s) 162, 549, 1008, 1034, 2384
BplI GAGNNNNNCTC 2 cut(s) 900, 932
BpmI CTGGAG 1 cut(s) 403
Bpu10I CCTNAGC 1 cut(s) 168
BpuEI CTTGAG 2 cut(s) 1837, 1916
BsaHI GRCGYC 2 cut(s) 553, 2760
BsaI GGTCTC 1 cut(s) 1868
BsaJI CCNNGG 5 cut(s) 265, 378, 600, 768, 1878
BsaXI ACNNNNNCTCC 2 cut(s) 1995, 2025
Bsc4I CCNNNNNNNGG 6 cut(s) 88, 135, 379, 475, 572, 2687
Bse1I ACTGG 5 cut(s) 480, 591, 740, 866, 2321
Bse3DI GCAATG 3 cut(s) 888, 934, 2550
BseBI CCWGG 6 cut(s) 101, 557, 1845, 1952, 2339, 2411
BseDI CCNNGG 5 cut(s) 265, 378, 600, 768, 1878
BseLI CCNNNNNNNGG 6 cut(s) 88, 135, 379, 475, 572, 2687
BseMI GCAATG 3 cut(s) 888, 934, 2550
BseMII CTCAG 6 cut(s) 182, 1261, 1286, 1569, 1816, 1908
BseNI ACTGG 5 cut(s) 480, 591, 740, 866, 2321
BseRI GAGGAG 3 cut(s) 2253, 2549, 2830
BseSI GKGCMC 1 cut(s) 1759
BseXI GCAGC 6 cut(s) 795, 1159, 1460, 1556, 1716, 2619
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 4 cut(s) 128, 264, 869, 1121
BshNI GGYRCC 1 cut(s) 822
BsiHKAI GWGCWC 4 cut(s) 1563, 1759, 2100, 2263
BsiHKCI CYCGRG 1 cut(s) 2099
BsiWI CGTACG 1 cut(s) 1977
BslFI GGGAC 5 cut(s) 396, 1113, 1997, 2582, 2771
BslI CCNNNNNNNGG 6 cut(s) 88, 135, 379, 475, 572, 2687
BsmAI GTCTC 2 cut(s) 1647, 1868
BsmBI CGTCTC 1 cut(s) 1647
BsmFI GGGAC 5 cut(s) 396, 1113, 1997, 2582, 2771
BsnI GGCC 4 cut(s) 128, 264, 869, 1121
Bso31I GGTCTC 1 cut(s) 1868
BsoBI CYCGRG 1 cut(s) 2099
Bsp1286I GDGCHC 5 cut(s) 990, 1563, 1759, 2100, 2263
Bsp1407I TGTACA 1 cut(s) 1621
Bsp19I CCATGG 2 cut(s) 265, 768
BspACI CCGC 2 cut(s) 1095, 2575
BspANI GGCC 4 cut(s) 128, 264, 869, 1121
BspCNI CTCAG 6 cut(s) 181, 1260, 1287, 1570, 1815, 1909
BspHI TCATGA 1 cut(s) 208
BspMAI CTGCAG 4 cut(s) 813, 1025, 1617, 2020
BspPI GGATC 9 cut(s) 73, 86, 617, 630, 668, 1071, 1890, 2372, 2385
BspT107I GGYRCC 1 cut(s) 822
BspTI CTTAAG 1 cut(s) 133
BspTNI GGTCTC 1 cut(s) 1868
BsrDI GCAATG 3 cut(s) 888, 934, 2550
BsrGI TGTACA 1 cut(s) 1621
BsrI ACTGG 5 cut(s) 480, 591, 740, 866, 2321
BssECI CCNNGG 5 cut(s) 265, 378, 600, 768, 1878
BssNI GRCGYC 2 cut(s) 553, 2760
BssT1I CCWWGG 5 cut(s) 265, 378, 600, 768, 1878
Bst2UI CCWGG 6 cut(s) 101, 557, 1845, 1952, 2339, 2411
Bst4CI ACNGT 7 cut(s) 667, 980, 1256, 1565, 1641, 1738, 2349
Bst6I CTCTTC 3 cut(s) 51, 474, 2334
BstACI GRCGYC 2 cut(s) 553, 2760
BstAFI CTTAAG 1 cut(s) 133
BstAPI GCANNNNNTGC 1 cut(s) 11
BstAUI TGTACA 1 cut(s) 1621
BstC8I GCNNGC 4 cut(s) 415, 506, 2033, 2453
BstDSI CCRYGG 2 cut(s) 265, 768
BstEII GGTNACC 1 cut(s) 2158
BstENI CCTNNNNNAGG 2 cut(s) 133, 377
BstH2I RGCGCY 1 cut(s) 1131
BstHHI GCGC 3 cut(s) 120, 510, 1130
BstMAI GTCTC 2 cut(s) 1647, 1868
BstMWI GCNNNNNNNGC 8 cut(s) 11, 439, 514, 1118, 1127, 1136, 2047, 2090
BstNI CCWGG 6 cut(s) 101, 557, 1845, 1952, 2339, 2411
BstNSI RCATGY 3 cut(s) 656, 973, 1050
BstPI GGTNACC 1 cut(s) 2158
BstSCI CCNGG 6 cut(s) 99, 555, 1843, 1950, 2337, 2409
BstSFI CTRYAG 6 cut(s) 809, 1021, 1613, 1716, 2016, 2529
BstSLI GKGCMC 1 cut(s) 1759
BstV1I GCAGC 6 cut(s) 795, 1159, 1460, 1556, 1716, 2619
BstV2I GAAGAC 5 cut(s) 162, 549, 1008, 1034, 2384
BstX2I RGATCY 4 cut(s) 78, 622, 1882, 2377
BstYI RGATCY 4 cut(s) 78, 622, 1882, 2377
BsuRI GGCC 4 cut(s) 128, 264, 869, 1121
BtgI CCRYGG 2 cut(s) 265, 768
BtsI GCAGTG 1 cut(s) 1610
BtsIMutI CAGTG 4 cut(s) 663, 1261, 1610, 2314
Cac8I GCNNGC 4 cut(s) 415, 506, 2033, 2453
CaiI CAGNNNCTG 1 cut(s) 746
CciI TCATGA 1 cut(s) 208
CfoI GCGC 3 cut(s) 120, 510, 1130
Cfr13I GGNCC 3 cut(s) 97, 2011, 2596
CseI GACGC 1 cut(s) 561
CsiI ACCWGGT 3 cut(s) 99, 2337, 2409
CspCI CAANNNNNGTGG 4 cut(s) 880, 915, 2237, 2272
DraI TTTAAA 2 cut(s) 1143, 2628
EaeI YGGCCR 2 cut(s) 262, 1119
Eam1104I CTCTTC 3 cut(s) 51, 474, 2334
EarI CTCTTC 3 cut(s) 51, 474, 2334
Ecl136II GAGCTC 1 cut(s) 2098
Eco130I CCWWGG 5 cut(s) 265, 378, 600, 768, 1878
Eco147I AGGCCT 1 cut(s) 128
Eco24I GRGCYC 2 cut(s) 990, 2100
Eco31I GGTCTC 1 cut(s) 1868
Eco47I GGWCC 3 cut(s) 97, 2011, 2596
Eco47III AGCGCT 1 cut(s) 1129
Eco53kI GAGCTC 1 cut(s) 2098
Eco57I CTGAAG 5 cut(s) 768, 1377, 2258, 2378, 2504
Eco88I CYCGRG 1 cut(s) 2099
Eco91I GGTNACC 1 cut(s) 2158
EcoICRI GAGCTC 1 cut(s) 2098
EcoNI CCTNNNNNAGG 2 cut(s) 133, 377
EcoO109I RGGNCCY 3 cut(s) 97, 2011, 2596
EcoO65I GGTNACC 1 cut(s) 2158
EcoRII CCWGG 6 cut(s) 99, 555, 1843, 1950, 2337, 2409
EcoT14I CCWWGG 5 cut(s) 265, 378, 600, 768, 1878
EcoT38I GRGCYC 2 cut(s) 990, 2100
ErhI CCWWGG 5 cut(s) 265, 378, 600, 768, 1878
Esp3I CGTCTC 1 cut(s) 1647
FalI AAGNNNNNCTT 6 cut(s) 116, 148, 1668, 1700, 2039, 2071
FaqI GGGAC 5 cut(s) 396, 1113, 1997, 2582, 2771
FauI CCCGC 1 cut(s) 1088
FauNDI CATATG 1 cut(s) 1329
FbaI TGATCA 2 cut(s) 708, 1213
Fnu4HI GCNGC 6 cut(s) 809, 1173, 1449, 1545, 1730, 2633
FriOI GRGCYC 2 cut(s) 990, 2100
Fsp4HI GCNGC 6 cut(s) 809, 1173, 1449, 1545, 1730, 2633
FspBI CTAG 6 cut(s) 50, 1136, 1527, 1871, 2384, 2555
GlaI GCGC 3 cut(s) 119, 509, 1129
GluI GCNGC 6 cut(s) 809, 1173, 1449, 1545, 1730, 2633
GsuI CTGGAG 1 cut(s) 403
HaeII RGCGCY 1 cut(s) 1131
HaeIII GGCC 4 cut(s) 128, 264, 869, 1121
HgaI GACGC 1 cut(s) 561
HhaI GCGC 3 cut(s) 120, 510, 1130
Hin1I GRCGYC 2 cut(s) 553, 2760
Hin6I GCGC 3 cut(s) 118, 508, 1128
HinP1I GCGC 3 cut(s) 118, 508, 1128
HincII GTYRAC 3 cut(s) 31, 406, 1606
HindII GTYRAC 3 cut(s) 31, 406, 1606
HindIII AAGCTT 3 cut(s) 290, 1790, 2449
HpaI GTTAAC 1 cut(s) 1606
HphI GGTGA 3 cut(s) 10, 1843, 2152
Hpy166II GTNNAC 6 cut(s) 31, 406, 616, 1606, 1757, 2416
Hpy8I GTNNAC 6 cut(s) 31, 406, 616, 1606, 1757, 2416
Hpy99I CGWCG 1 cut(s) 1593
HpyCH4III ACNGT 7 cut(s) 667, 980, 1256, 1565, 1641, 1738, 2349
HpyCH4IV ACGT 5 cut(s) 640, 1984, 2389, 2760, 2827
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 439, 514, 1118, 1127, 1136, 2047, 2090
HpySE526I ACGT 5 cut(s) 640, 1984, 2389, 2760, 2827
Hsp92I GRCGYC 2 cut(s) 553, 2760
HspAI GCGC 3 cut(s) 118, 508, 1128
KpnI GGTACC 1 cut(s) 826
Ksp22I TGATCA 2 cut(s) 708, 1213
KspAI GTTAAC 1 cut(s) 1606
LmnI GCTCC 7 cut(s) 115, 422, 699, 1193, 1853, 2046, 2266
Lsp1109I GCAGC 6 cut(s) 795, 1159, 1460, 1556, 1716, 2619
LweI GCATC 7 cut(s) 129, 136, 211, 309, 454, 1308, 1497
MabI ACCWGGT 3 cut(s) 99, 2337, 2409
MaeI CTAG 6 cut(s) 50, 1136, 1527, 1871, 2384, 2555
MaeII ACGT 5 cut(s) 640, 1984, 2389, 2760, 2827
MaeIII GTNAC 6 cut(s) 16, 1250, 1409, 2158, 2307, 2524
MfeI CAATTG 4 cut(s) 498, 518, 1113, 2036
MflI RGATCY 4 cut(s) 78, 622, 1882, 2377
MhlI GDGCHC 5 cut(s) 990, 1563, 1759, 2100, 2263
MlsI TGGCCA 1 cut(s) 1121
MluNI TGGCCA 1 cut(s) 1121
MlyI GAGTC 6 cut(s) 539, 998, 1006, 1982, 2274, 2371
Mox20I TGGCCA 1 cut(s) 1121
MroXI GAANNNNTTC 1 cut(s) 641
MscI TGGCCA 1 cut(s) 1121
MslI CAYNNNNRTG 3 cut(s) 264, 1085, 2682
Msp20I TGGCCA 1 cut(s) 1121
MspA1I CMGCKG 2 cut(s) 1729, 2575
MspCI CTTAAG 1 cut(s) 133
MspR9I CCNGG 6 cut(s) 101, 557, 1845, 1952, 2339, 2411
MunI CAATTG 4 cut(s) 498, 518, 1113, 2036
MvaI CCWGG 6 cut(s) 101, 557, 1845, 1952, 2339, 2411
MwoI GCNNNNNNNGC 8 cut(s) 11, 439, 514, 1118, 1127, 1136, 2047, 2090
NcoI CCATGG 2 cut(s) 265, 768
NdeI CATATG 1 cut(s) 1329
NmuCI GTSAC 2 cut(s) 16, 2158
NspI RCATGY 3 cut(s) 656, 973, 1050
PagI TCATGA 1 cut(s) 208
PceI AGGCCT 1 cut(s) 128
PciI ACATGT 1 cut(s) 969
PcsI WCGNNNNNNNCGW 1 cut(s) 904
PdmI GAANNNNTTC 1 cut(s) 641
PfeI GAWTC 5 cut(s) 270, 1339, 1441, 1679, 1927
Pfl23II CGTACG 1 cut(s) 1977
PflFI GACNNNGTC 2 cut(s) 1639, 1941
PflMI CCANNNNNTGG 2 cut(s) 572, 2687
PkrI GCNGC 6 cut(s) 810, 1174, 1450, 1546, 1731, 2634
PleI GAGTC 6 cut(s) 539, 998, 1006, 1981, 2274, 2370
PpsI GAGTC 6 cut(s) 539, 998, 1006, 1981, 2274, 2370
PpuMI RGGWCCY 3 cut(s) 97, 2011, 2596
PscI ACATGT 1 cut(s) 969
PshBI ATTAAT 1 cut(s) 2663
Psp124BI GAGCTC 1 cut(s) 2100
Psp1406I AACGTT 1 cut(s) 640
Psp5II RGGWCCY 3 cut(s) 97, 2011, 2596
Psp6I CCWGG 6 cut(s) 99, 555, 1843, 1950, 2337, 2409
PspEI GGTNACC 1 cut(s) 2158
PspGI CCWGG 6 cut(s) 99, 555, 1843, 1950, 2337, 2409
PspLI CGTACG 1 cut(s) 1977
PspPI GGNCC 3 cut(s) 97, 2011, 2596
PspPPI RGGWCCY 3 cut(s) 97, 2011, 2596
PstI CTGCAG 4 cut(s) 813, 1025, 1617, 2020
PstNI CAGNNNCTG 1 cut(s) 746
PsuI RGATCY 4 cut(s) 78, 622, 1882, 2377
PsyI GACNNNGTC 2 cut(s) 1639, 1941
PvuII CAGCTG 1 cut(s) 1729
RseI CAYNNNNRTG 3 cut(s) 264, 1085, 2682
SacI GAGCTC 1 cut(s) 2100
SatI GCNGC 6 cut(s) 809, 1173, 1449, 1545, 1730, 2633
Sau96I GGNCC 3 cut(s) 97, 2011, 2596
SbfI CCTGCAGG 1 cut(s) 2020
SchI GAGTC 6 cut(s) 539, 998, 1006, 1982, 2274, 2371
ScrFI CCNGG 6 cut(s) 101, 557, 1845, 1952, 2339, 2411
SdaI CCTGCAGG 1 cut(s) 2020
SduI GDGCHC 5 cut(s) 990, 1563, 1759, 2100, 2263
SexAI ACCWGGT 3 cut(s) 99, 2337, 2409
SfaNI GCATC 7 cut(s) 129, 136, 211, 309, 454, 1308, 1497
SfcI CTRYAG 6 cut(s) 809, 1021, 1613, 1716, 2016, 2529
SinI GGWCC 3 cut(s) 97, 2011, 2596
SmiMI CAYNNNNRTG 3 cut(s) 264, 1085, 2682
SmlI CTYRAG 3 cut(s) 133, 1816, 1931
SmoI CTYRAG 3 cut(s) 133, 1816, 1931
Sse8387I CCTGCAGG 1 cut(s) 2020
SseBI AGGCCT 1 cut(s) 128
SsiI CCGC 2 cut(s) 1095, 2575
SspMI CTAG 6 cut(s) 50, 1136, 1527, 1871, 2384, 2555
SstI GAGCTC 1 cut(s) 2100
StuI AGGCCT 1 cut(s) 128
StyD4I CCNGG 6 cut(s) 99, 555, 1843, 1950, 2337, 2409
StyI CCWWGG 5 cut(s) 265, 378, 600, 768, 1878
TaaI ACNGT 7 cut(s) 667, 980, 1256, 1565, 1641, 1738, 2349
TaiI ACGT 5 cut(s) 643, 1987, 2392, 2763, 2830
TaqI TCGA 6 cut(s) 93, 673, 907, 1075, 1588, 2646
TatI WGTACW 2 cut(s) 1132, 1621
TfiI GAWTC 5 cut(s) 270, 1339, 1441, 1679, 1927
TscAI CASTG 4 cut(s) 670, 1261, 1617, 2321
TseFI GTSAC 2 cut(s) 16, 2158
TseI GCWGC 6 cut(s) 808, 1172, 1448, 1544, 1729, 2632
Tsp45I GTSAC 2 cut(s) 16, 2158
TspGWI ACGGA 1 cut(s) 2164
TspRI CASTG 4 cut(s) 670, 1261, 1617, 2321
Tth111I GACNNNGTC 2 cut(s) 1639, 1941
Van91I CCANNNNNTGG 2 cut(s) 572, 2687
Vha464I CTTAAG 1 cut(s) 133
VneI GTGCAC 1 cut(s) 1755
VpaK11BI GGWCC 3 cut(s) 97, 2011, 2596
VspI ATTAAT 1 cut(s) 2663
XagI CCTNNNNNAGG 2 cut(s) 133, 377
XapI RAATTY 8 cut(s) 233, 330, 449, 1057, 1068, 1537, 1839, 2639
XbaI TCTAGA 2 cut(s) 1526, 2554
XceI RCATGY 3 cut(s) 656, 973, 1050
XcmI CCANNNNNNNNNTGG 1 cut(s) 1005
XmnI GAANNNNTTC 1 cut(s) 641
XspI CTAG 6 cut(s) 50, 1136, 1527, 1871, 2384, 2555
ZraI GACGTC 1 cut(s) 2761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.