Rh7BG261700

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
23913350 .. 23913661
312 bp
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UTR
Exon/CDS
Intron
Rh7BG261700.1

Sequence Viewer

Length: 312 bp
ATGGACCAGGGAGCAGTGCCTCATCTAGAGAAGCTGATTATCCAACGGTGCGAGTTGTTGAAGGTTCCATATGGAATTGAACATTTAACCAACTTAAAGTTGCTTGAATTTTTCGATGTGCCAGTTGAAGTAATCATGCCTCTATATCCAGATGATGGAAAAGATCATTGGAAAGTCGTTCATGTCCCAGAAGTCTATTATTCCTATCAGAGAGGTGGCGACTGGAATGTCTGTTCATTAGTCAATGAAGGGTTTAATTCGCGTACTTCTGCCACGAGAAGGCTTGAACGAAATACTGTATGGAAGGTGTAG

Protein Analysis

103

Amino Acids

12.04

Weight (kDa)

6.05

Isoelectric Point (pI)

29.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000482)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica MD06G1024000.v1.1
prunus_persica Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis pycom16g25280
rosa_chinensis RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii Rroxscaffold_3G00246720
rosa_rugosa Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AccB7I CCANNNNNTGG 1 cut(s) 155
AccII CGCG 1 cut(s) 262
AcsI RAATTY 1 cut(s) 107
AfaI GTAC 1 cut(s) 265
AfiI CCNNNNNNNGG 2 cut(s) 155, 279
AgsI TTSAA 5 cut(s) 61, 80, 107, 128, 287
AjnI CCWGG 1 cut(s) 6
AjuI GAANNNNNNNTTGG 2 cut(s) 151, 183
AloI GAACNNNNNNTCC 2 cut(s) 217, 249
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
ApoI RAATTY 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 274
BccI CCATC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 8
BfaI CTAG 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 7
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 279
Bse1I ACTGG 2 cut(s) 122, 227
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 7
BseLI CCNNNNNNNGG 2 cut(s) 155, 279
BseNI ACTGG 2 cut(s) 122, 227
Bsh1236I CGCG 1 cut(s) 262
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 155, 279
BsmFI GGGAC 1 cut(s) 170
Bsp143I GATC 1 cut(s) 163
BspFNI CGCG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 66
BsrI ACTGG 2 cut(s) 122, 227
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 1 cut(s) 163
BssSI CACGAG 1 cut(s) 274
Bst2BI CACGAG 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 2 cut(s) 48, 298
BstFNI CGCG 1 cut(s) 262
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BstUI CGCG 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 264
CviAII CATG 2 cut(s) 136, 182
CviJI RGCY 2 cut(s) 34, 283
CviKI_1 RGCY 2 cut(s) 34, 283
CviQI GTAC 1 cut(s) 264
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 6
FaeI CATG 2 cut(s) 139, 185
FaiI YATR 6 cut(s) 70, 72, 137, 145, 183, 301
FaqI GGGAC 1 cut(s) 170
FatI CATG 2 cut(s) 135, 181
FauNDI CATATG 1 cut(s) 70
FspBI CTAG 1 cut(s) 26
Hin1II CATG 2 cut(s) 139, 185
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 2 cut(s) 26, 149
HpyAV CCTTC 4 cut(s) 55, 242, 273, 298
HpyCH4III ACNGT 2 cut(s) 48, 298
Hsp92II CATG 2 cut(s) 139, 185
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 5 cut(s) 20, 135, 162, 201, 208
MaeI CTAG 1 cut(s) 26
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MluCI AATT 3 cut(s) 75, 107, 256
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 3 cut(s) 30, 150, 206
MseI TTAA 3 cut(s) 86, 95, 255
MspR9I CCNGG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 8
MvnI CGCG 1 cut(s) 262
NdeI CATATG 1 cut(s) 70
NdeII GATC 1 cut(s) 163
NlaIII CATG 2 cut(s) 139, 185
NlaIV GGNNCC 1 cut(s) 66
PflMI CCANNNNNTGG 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
SaqAI TTAA 3 cut(s) 86, 95, 255
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 8
SetI ASST 4 cut(s) 36, 66, 217, 309
SinI GGWCC 1 cut(s) 4
Sse9I AATT 3 cut(s) 75, 107, 256
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 48, 298
TaqI TCGA 1 cut(s) 114
TasI AATT 3 cut(s) 75, 107, 256
Tru1I TTAA 3 cut(s) 86, 95, 255
Tru9I TTAA 3 cut(s) 86, 95, 255
TscAI CASTG 1 cut(s) 21
TspDTI ATGAA 3 cut(s) 170, 225, 261
TspRI CASTG 1 cut(s) 21
Van91I CCANNNNNTGG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 107
XbaI TCTAGA 1 cut(s) 25
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.