Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Forward (+)

41213251 .. 41213814

Gene Structure 564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002885

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCAGAGAGTTCGGTTAAGCTTCAGCTGCTAGATAAACTTGGAACCATTTTCAAAAATGAGGTACACCTGTTGGATGTGTTATTCGGAGGGGTTCAAGAAGAAGCGATCAATCTTCGAAGAGAGTTTGAAAGAATGAGGGCCTTCCTGAGGACTGCAGATGCATTGCAGGAAACCGATCTGGAAGTCAAAGTTTGGGTTAAGCAAGTCAGAGATATTGCTCATGAAGCTGAAGATATTCTAGATGAATTTACTTTGCTCCACGAACATGATCATGGGGATGGAATCTATGGTTCTCTATGCAGATTGAGTTGCTGTATCAAGAATGCAAAAGCTTGTTATCGTATTGCTTCTCAGTTCAAAGCCATCAACTCAAGAGTCAAAAGTATTTCAGAGGTTCATAAGAGACTCCAACACAAATTCATCAAAGCCGAAGAAGGTCTAGGATTTGACAGTGTGGAAAATACTGGAGAGAAGACAATCCGTCCAGATGGAAAAGATAATTGGAGAGTCTCGCATGTCCCTGAAGTTTCTTCGACATACTGGAGAGAAGGGGAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

188

Amino Acids

21.54

Weight (kDa)

5.92

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	10 - 92	3.7e-22	Rx N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	248, 419
AcuI	CTGAAG	3 cut(s)	8, 252, 546
AfaI	GTAC	1 cut(s)	66
AfiI	CCNNNNNNNGG	1 cut(s)	150
AgsI	TTSAA	4 cut(s)	55, 98, 131, 361
AhdI	GACNNNNNGTC	1 cut(s)	483
AjuI	GAANNNNNNNTTGG	2 cut(s)	487, 519
AluBI	AGCT	4 cut(s)	22, 28, 230, 335
AluI	AGCT	4 cut(s)	22, 28, 230, 335
Alw26I	GTCTC	2 cut(s)	400, 517
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	2 cut(s)	248, 419
Asp700I	GAANNNNTTC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	141
AsuII	TTCGAA	1 cut(s)	118
AxyI	CCTNAGG	1 cut(s)	149
BaeI	ACNNNNGTAYC	2 cut(s)	56, 89
BbsI	GAAGAC	1 cut(s)	482
BbvI	GCAGC	1 cut(s)	15
BccI	CCATC	3 cut(s)	275, 374, 485
BcgI	CGANNNNNNTGC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	400, 517
BfaI	CTAG	3 cut(s)	32, 242, 443
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
BmeRI	GACNNNNNGTC	1 cut(s)	483
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	46
BmsI	GCATC	1 cut(s)	151
BpiI	GAAGAC	1 cut(s)	482
BpmI	CTGGAG	1 cut(s)	489
Bpu14I	TTCGAA	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse1I	ACTGG	2 cut(s)	472, 548
Bse21I	CCTNAGG	1 cut(s)	149
Bse3DI	GCAATG	1 cut(s)	164
BseGI	GGATG	2 cut(s)	82, 286
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMI	GCAATG	1 cut(s)	164
BseMII	CTCAG	2 cut(s)	140, 368
BseNI	ACTGG	2 cut(s)	472, 548
BseXI	GCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	2 cut(s)	400, 517
BsmFI	GGGAC	1 cut(s)	506
BsmI	GAATGC	1 cut(s)	331
BsnI	GGCC	1 cut(s)	143
Bsp119I	TTCGAA	1 cut(s)	118
Bsp143I	GATC	3 cut(s)	108, 178, 271
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	2 cut(s)	141, 367
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	160
BspT104I	TTCGAA	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	472, 548
BssMI	GATC	3 cut(s)	108, 178, 271
Bst4CI	ACNGT	1 cut(s)	455
Bst6I	CTCTTC	1 cut(s)	115
BstBI	TTCGAA	1 cut(s)	118
BstDEI	CTNAG	2 cut(s)	149, 354
BstENI	CCTNNNNNAGG	1 cut(s)	148
BstF5I	GGATG	2 cut(s)	82, 286
BstKTI	GATC	3 cut(s)	111, 181, 274
BstMAI	GTCTC	2 cut(s)	400, 517
BstMBI	GATC	3 cut(s)	108, 178, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 227
BstNSI	RCATGY	1 cut(s)	521
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	15
BstV2I	GAAGAC	1 cut(s)	482
Bsu36I	CCTNAGG	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	82, 286
BtsIMutI	CAGTG	1 cut(s)	460
CciI	TCATGA	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	65
CviAII	CATG	4 cut(s)	224, 269, 275, 518
CviJI	RGCY	7 cut(s)	22, 28, 143, 230, 335, 365, 431
CviKI_1	RGCY	7 cut(s)	22, 28, 143, 230, 335, 365, 431
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	2 cut(s)	149, 354
DpnI	GATC	3 cut(s)	110, 180, 273
DpnII	GATC	3 cut(s)	108, 178, 271
DriI	GACNNNNNGTC	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	115
Eam1105I	GACNNNNNGTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	115
Eco57I	CTGAAG	3 cut(s)	8, 252, 546
Eco81I	CCTNAGG	1 cut(s)	149
EcoNI	CCTNNNNNAGG	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	141
EcoT22I	ATGCAT	1 cut(s)	166
FaeI	CATG	4 cut(s)	227, 272, 278, 521
FaiI	YATR	8 cut(s)	225, 270, 276, 291, 301, 402, 519, 541
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	4 cut(s)	223, 268, 274, 517
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	2 cut(s)	89, 293
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	3 cut(s)	32, 242, 443
GluI	GCNGC	1 cut(s)	29
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	143
Hin1II	CATG	4 cut(s)	227, 272, 278, 521
HindIII	AAGCTT	2 cut(s)	20, 333
HinfI	GANTC	4 cut(s)	285, 378, 408, 510
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	3 cut(s)	89, 212, 394
Hpy188III	TCNNGA	8 cut(s)	98, 148, 182, 224, 242, 322, 375, 488
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	3 cut(s)	154, 431, 545
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4V	TGCA	5 cut(s)	158, 164, 169, 303, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 227
HpyF3I	CTNAG	2 cut(s)	149, 354
Hsp92II	CATG	4 cut(s)	227, 272, 278, 521
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	108, 178, 271
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	8 cut(s)	83, 155, 161, 167, 453, 501, 529, 537
Lsp1109I	GCAGC	1 cut(s)	15
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	3 cut(s)	32, 242, 443
MalI	GATC	3 cut(s)	110, 180, 273
MboI	GATC	3 cut(s)	108, 178, 271
MboII	GAAGA	7 cut(s)	107, 113, 132, 245, 446, 487, 525
MluCI	AATT	3 cut(s)	248, 419, 502
MlyI	GAGTC	3 cut(s)	387, 402, 519
MmeI	TCCRAC	2 cut(s)	54, 436
MnlI	CCTC	5 cut(s)	55, 83, 132, 144, 388
Mph1103I	ATGCAT	1 cut(s)	166
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	2 cut(s)	18, 201
MslI	CAYNNNNRTG	3 cut(s)	267, 273, 279
MspA1I	CMGCKG	1 cut(s)	28
Mva1269I	GAATGC	1 cut(s)	331
MwoI	GCNNNNNNNGC	2 cut(s)	28, 227
NdeII	GATC	3 cut(s)	108, 178, 271
NlaIII	CATG	4 cut(s)	227, 272, 278, 521
NlaIV	GGNNCC	1 cut(s)	46
NsiI	ATGCAT	1 cut(s)	166
NspI	RCATGY	1 cut(s)	521
NspV	TTCGAA	1 cut(s)	118
PagI	TCATGA	1 cut(s)	223
PctI	GAATGC	1 cut(s)	331
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	3 cut(s)	386, 402, 518
PpsI	GAGTC	3 cut(s)	386, 402, 518
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	141
PstI	CTGCAG	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
RseI	CAYNNNNRTG	3 cut(s)	267, 273, 279
SaqAI	TTAA	2 cut(s)	18, 201
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	3 cut(s)	108, 178, 271
Sau96I	GGNCC	1 cut(s)	141
SchI	GAGTC	3 cut(s)	387, 402, 519
SetI	ASST	8 cut(s)	24, 30, 66, 72, 232, 337, 399, 442
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	156
SfuI	TTCGAA	1 cut(s)	118
SmiMI	CAYNNNNRTG	3 cut(s)	267, 273, 279
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
Sse9I	AATT	3 cut(s)	248, 419, 502
SspMI	CTAG	3 cut(s)	32, 242, 443
TaaI	ACNGT	1 cut(s)	455
TaqI	TCGA	2 cut(s)	118, 536
TasI	AATT	3 cut(s)	248, 419, 502
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	2 cut(s)	18, 201
Tru9I	TTAA	2 cut(s)	18, 201
TscAI	CASTG	1 cut(s)	460
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	4 cut(s)	240, 261, 389, 412
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	1 cut(s)	460
XagI	CCTNNNNNAGG	1 cut(s)	148
XapI	RAATTY	2 cut(s)	248, 419
XbaI	TCTAGA	1 cut(s)	241
XceI	RCATGY	1 cut(s)	521
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	3 cut(s)	32, 242, 443
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.