Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001435.1

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Reverse (-)

1908 .. 2213

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001435.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgccatgtctagaaaagttaattattcagcgatgtgaatcattgaagaaggtcccatatggcatcgagcatttaaaaaggttaaagttgcttgagttttttgatatgccaaatgaactaatcatgcttctacatccagatggtggaggtgatcattggaaagtcgctcatgtcccggcagtttactattcctattggagaaatgatgggtgggatgtctactcattagtcaatgaaggggagagttttaatacaggtacttcggctgtgaggaagctctttcgtaatatattatggaaggcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

101

Amino Acids

11.84

Weight (kDa)

7.8

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	46
AluBI	AGCT	1 cut(s)	277
AluI	AGCT	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	52
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	52
BccI	CCATC	2 cut(s)	134, 200
BclI	TGATCA	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	176
BfaI	CTAG	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse8I	GATNNNNATC	1 cut(s)	37
BseGI	GGATG	2 cut(s)	133, 220
BseJI	GATNNNNATC	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	2 cut(s)	38, 158
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmFI	GGGAC	2 cut(s)	38, 158
Bsp143I	GATC	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	54
BssMI	GATC	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	133, 220
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	46
BtsCI	GGATG	2 cut(s)	133, 220
Cfr13I	GGNCC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	3 cut(s)	6, 124, 170
CviJI	RGCY	2 cut(s)	266, 277
CviKI_1	RGCY	2 cut(s)	266, 277
CviQI	GTAC	1 cut(s)	258
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
DraI	TTTAAA	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	52
FaeI	CATG	3 cut(s)	9, 127, 173
FaiI	YATR	9 cut(s)	7, 58, 60, 107, 125, 171, 290, 295, 304
FaqI	GGGAC	2 cut(s)	38, 158
FatI	CATG	3 cut(s)	5, 123, 169
FauNDI	CATATG	1 cut(s)	58
FbaI	TGATCA	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	219
FokI	GGATG	2 cut(s)	120, 227
FspBI	CTAG	1 cut(s)	11
HapII	CCGG	1 cut(s)	176
Hin1II	CATG	3 cut(s)	9, 127, 173
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	2 cut(s)	184, 220
Hpy188III	TCNNGA	2 cut(s)	11, 137
Hpy8I	GTNNAC	2 cut(s)	184, 220
HpyAV	CCTTC	3 cut(s)	43, 230, 292
Hsp92II	CATG	3 cut(s)	9, 127, 173
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	151
LpnPI	CCDG	3 cut(s)	150, 189, 240
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	11
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	1 cut(s)	58
MluCI	AATT	1 cut(s)	21
MnlI	CCTC	2 cut(s)	140, 264
MseI	TTAA	4 cut(s)	20, 74, 83, 249
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	176
NciI	CCSGG	1 cut(s)	176
NdeI	CATATG	1 cut(s)	58
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	3 cut(s)	9, 127, 173
NlaIV	GGNNCC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	52
PspPPI	RGGWCCY	1 cut(s)	52
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	4 cut(s)	20, 74, 83, 249
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	176
SetI	ASST	5 cut(s)	54, 83, 151, 259, 279
SfaNI	GCATC	1 cut(s)	72
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	1 cut(s)	21
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	174
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	4 cut(s)	20, 74, 83, 249
Tru9I	TTAA	4 cut(s)	20, 74, 83, 249
TspDTI	ATGAA	2 cut(s)	129, 249
Van91I	CCANNNNNTGG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	52
XbaI	TCTAGA	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.