Rorug07G0135200

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000482
Physical Location & Seq
Forward (+)
10598712 .. 10600596
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0135200.1

Sequence Viewer

Length: 507 bp
ATGAAAATATCAGCATCTCGTGTAGATGTTGTGTCATTGACCATGTACTTGGCGGTTAAGAGCTATGTGATGCTTGCAATTGCAGGGCTTTCCCCCTCTATATTGAAGTGTAGTCCTGTGGCTTTGAATTGCAATGAGCGTGGTCTTGGTCTTACAAACGGAGCTCCAGAACTATATGGAAGCAGGCTACAAAAAGTTTGTGAAAGCTATGTTGCTCAGCTGCAACTGTGCCAGGTAAAGGAGATGGTGCTAGCCCTTTTGCGTGAATCAGAGCTGGCACTTACCTATGATGTTATTGAATCAATCGCTGACAAGACAATGATGAAGGCAGCTTTAAAAGGAGATGGAAAAATTGATCAAGAAGAGTGGAAGGAATATGTGGCAAAACATCCATCTCTTATAAAGAATATGACTCTTCCATATCTACAGACTACAGGACATAACAATAGCATTTCCCAGCTTTGTGCTCAACACCGAAGTTCAAGATTAGATATGGTTGCATGGTAA

Protein Analysis

168

Amino Acids

18.58

Weight (kDa)

8.24

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000482)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica MD06G1024000.v1.1
prunus_persica Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis pycom16g25280
rosa_chinensis RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii Rroxscaffold_3G00246720
rosa_rugosa Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 401
AciI CCGC 1 cut(s) 53
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 4 cut(s) 106, 127, 299, 483
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 7 cut(s) 63, 164, 207, 220, 274, 332, 460
AluI AGCT 7 cut(s) 63, 164, 207, 220, 274, 332, 460
Alw21I GWGCWC 2 cut(s) 166, 469
ApeKI GCWGC 2 cut(s) 220, 329
AsuNHI GCTAGC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 166
BauI CACGAG 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 166, 469
BbvI GCAGC 2 cut(s) 207, 341
BccI CCATC 3 cut(s) 238, 338, 400
BciT130I CCWGG 1 cut(s) 233
BclI TGATCA 1 cut(s) 355
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 2 cut(s) 425, 432
BisI GCNGC 2 cut(s) 221, 330
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 2 cut(s) 222, 331
Bme1390I CCNGG 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 2 cut(s) 23, 60
BmtI GCTAGC 1 cut(s) 254
BpmI CTGGAG 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 233
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 230
BseXI GCAGC 2 cut(s) 207, 341
BseYI CCCAGC 1 cut(s) 456
BsiHKAI GWGCWC 2 cut(s) 166, 469
BslI CCNNNNNNNGG 1 cut(s) 238
Bsp1286I GDGCHC 2 cut(s) 166, 469
Bsp143I GATC 1 cut(s) 355
Bsp1720I GCTNAGC 1 cut(s) 216
BspACI CCGC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 229
BspOI GCTAGC 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 139
BssMI GATC 1 cut(s) 355
BssSI CACGAG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 228
Bst6I CTCTTC 2 cut(s) 357, 420
BstC8I GCNNGC 4 cut(s) 75, 185, 252, 276
BstDEI CTNAG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 388
BstKTI GATC 1 cut(s) 358
BstMBI GATC 1 cut(s) 355
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 231
BstSFI CTRYAG 2 cut(s) 425, 432
BstV1I GCAGC 2 cut(s) 207, 341
BstXI CCANNNNNNTGG 1 cut(s) 49
BtsCI GGATG 1 cut(s) 388
Cac8I GCNNGC 4 cut(s) 75, 185, 252, 276
Csp6I GTAC 1 cut(s) 46
CspCI CAANNNNNGTGG 4 cut(s) 121, 156, 347, 382
CviAII CATG 2 cut(s) 43, 501
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 216
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
DraI TTTAAA 1 cut(s) 336
Eam1104I CTCTTC 2 cut(s) 357, 420
EarI CTCTTC 2 cut(s) 357, 420
Ecl136II GAGCTC 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 166
Eco53kI GAGCTC 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 166
FaeI CATG 2 cut(s) 46, 504
FatI CATG 2 cut(s) 42, 500
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 2 cut(s) 221, 330
FokI GGATG 1 cut(s) 375
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 2 cut(s) 221, 330
FspBI CTAG 1 cut(s) 251
GluI GCNGC 2 cut(s) 221, 330
GsaI CCCAGC 1 cut(s) 460
GsuI CTGGAG 1 cut(s) 150
Hin1II CATG 2 cut(s) 46, 504
HinfI GANTC 3 cut(s) 266, 299, 412
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 3 cut(s) 167, 359, 483
HpyAV CCTTC 2 cut(s) 319, 364
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4V TGCA 5 cut(s) 77, 83, 132, 223, 500
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 2 cut(s) 46, 504
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 2 cut(s) 161, 169
LpnPI CCDG 9 cut(s) 69, 129, 169, 180, 218, 245, 260, 420, 470
Lsp1109I GCAGC 2 cut(s) 207, 341
LweI GCATC 2 cut(s) 23, 60
MaeI CTAG 1 cut(s) 251
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 2 cut(s) 374, 407
MfeI CAATTG 1 cut(s) 78
MhlI GDGCHC 2 cut(s) 166, 469
MluCI AATT 3 cut(s) 78, 127, 351
MlyI GAGTC 1 cut(s) 406
MnlI CCTC 1 cut(s) 106
MseI TTAA 2 cut(s) 57, 335
MspA1I CMGCKG 1 cut(s) 220
MspR9I CCNGG 1 cut(s) 233
MunI CAATTG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 233
NdeII GATC 1 cut(s) 355
NheI GCTAGC 1 cut(s) 250
NlaIII CATG 2 cut(s) 46, 504
PfeI GAWTC 2 cut(s) 266, 299
PkrI GCNGC 2 cut(s) 222, 331
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
PsiI TTATAA 1 cut(s) 401
Psp124BI GAGCTC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 231
PspFI CCCAGC 1 cut(s) 456
PspGI CCWGG 1 cut(s) 231
PvuII CAGCTG 1 cut(s) 220
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SacI GAGCTC 1 cut(s) 166
SaqAI TTAA 2 cut(s) 57, 335
SatI GCNGC 2 cut(s) 221, 330
Sau3AI GATC 1 cut(s) 355
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 2 cut(s) 166, 469
SetI ASST 9 cut(s) 65, 166, 209, 222, 237, 276, 287, 334, 462
SfaNI GCATC 2 cut(s) 23, 60
SfcI CTRYAG 2 cut(s) 425, 432
Sse9I AATT 3 cut(s) 78, 127, 351
SsiI CCGC 1 cut(s) 53
SspMI CTAG 1 cut(s) 251
SstI GAGCTC 1 cut(s) 166
StyD4I CCNGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 228
TasI AATT 3 cut(s) 78, 127, 351
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 2 cut(s) 266, 299
Tru1I TTAA 2 cut(s) 57, 335
Tru9I TTAA 2 cut(s) 57, 335
TseI GCWGC 2 cut(s) 220, 329
TspDTI ATGAA 2 cut(s) 17, 338
TspGWI ACGGA 1 cut(s) 174
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.