Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Forward (+)

10659845 .. 10661149

Gene Structure 1305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0135900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAGCAAGCCTCAGACACAGAGACCGAAACCGCCACCGTCGGGGCGGACCAACCTTGCGTCGTGCATAGTGGCCACCATCTTCCTAATCTTCATGGTCATCGTCTCCCTCATCGTCTACTTCACCGTCTTCAAACCCAAAGACCTCAAAATCTCCGTCAGCTCCGTCCAGCTCCCCTCCTTCTCCATCCTCAACTCCACCGTCAACTTCACCTTCTCCCAATACGTCGCCGTCCGCAACCCCAACCGCGCCGCCTTCCGCCACTACGACAGCACCCTCCAGCTCCTCTACTCCGGCAACCAAGTCGGCTTCATGTTCATCCCCGCCGGCAAAATCGAGCCCGGTCAGACCCAGTACATGGCCGCCACTTTCGCCGTCAACTCCTTCCCCGTTTCGGATCCCAATCTCTCCGGGGGGGCGGTCCAGGGCCCGATGGGCTCCCCCCAGTTCGGCGACGGGCTCAGCGGGTTTCGCGGCGGAGGAGGCGGAGGGCCCACGATGGAGATAGAGTCGAGGCTGCAGATGGCGGGTCGGGTTCGGGTCATGCACTTTTTCACCCACCACGCGGAGGCGAATTCCGGGTGTAGAGTCGCCATTGCTGTGAGTGACGGATCTGTGTTGGGTTTTCATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

211

Amino Acids

22.64

Weight (kDa)

9.67

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	3 cut(s)	249, 474, 566
AclWI	GGATC	3 cut(s)	392, 405, 619
AcoI	YGGCCR	2 cut(s)	72, 360
AcsI	RAATTY	1 cut(s)	574
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	6 cut(s)	41, 358, 394, 449, 565, 568
AgsI	TTSAA	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	3 cut(s)	162, 172, 283
AluI	AGCT	3 cut(s)	162, 172, 283
Alw26I	GTCTC	2 cut(s)	16, 109
AlwI	GGATC	3 cut(s)	392, 405, 619
AoxI	GGCC	4 cut(s)	72, 360, 427, 491
ApaI	GGGCCC	2 cut(s)	431, 495
ApeKI	GCWGC	1 cut(s)	517
ApoI	RAATTY	1 cut(s)	574
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	6 cut(s)	48, 421, 427, 428, 491, 492
AsuC2I	CCSGG	3 cut(s)	342, 412, 580
AsuHPI	GGTGA	3 cut(s)	115, 202, 547
AvaII	GGWCC	2 cut(s)	48, 421
BaeGI	GKGCMC	2 cut(s)	431, 495
BalI	TGGCCA	1 cut(s)	74
BamHI	GGATCC	1 cut(s)	397
BanII	GRGCYC	5 cut(s)	342, 431, 440, 462, 495
BbsI	GAAGAC	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	504
BccI	CCATC	5 cut(s)	86, 194, 427, 493, 517
BceAI	ACGGC	2 cut(s)	215, 359
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	1 cut(s)	425
BcnI	CCSGG	3 cut(s)	342, 412, 580
BcoDI	GTCTC	2 cut(s)	16, 109
BfmI	CTRYAG	1 cut(s)	518
BglI	GCCNNNNNGGC	1 cut(s)	435
BisI	GCNGC	4 cut(s)	252, 363, 475, 518
BlpI	GCTNAGC	1 cut(s)	461
BlsI	GCNGC	4 cut(s)	253, 364, 476, 519
Bme1390I	CCNGG	4 cut(s)	342, 412, 425, 580
Bme18I	GGWCC	2 cut(s)	48, 421
BmgT120I	GGNCC	6 cut(s)	48, 421, 427, 428, 491, 492
BmiI	GGNNCC	4 cut(s)	399, 429, 439, 493
BmrFI	CCNGG	4 cut(s)	342, 412, 425, 580
BmrI	ACTGGG	2 cut(s)	346, 439
BmuI	ACTGGG	2 cut(s)	346, 439
BpiI	GAAGAC	1 cut(s)	121
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	263
Bpu1102I	GCTNAGC	1 cut(s)	461
BpuMI	CCSGG	3 cut(s)	342, 412, 580
BsaBI	GATNNNNATC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	2 cut(s)	411, 424
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	6 cut(s)	41, 358, 394, 449, 565, 568
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	2 cut(s)	352, 445
Bse3DI	GCAATG	1 cut(s)	594
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	425
BseDI	CCNNGG	2 cut(s)	411, 424
BseGI	GGATG	2 cut(s)	186, 318
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	6 cut(s)	41, 358, 394, 449, 565, 568
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	2 cut(s)	26, 475
BseNI	ACTGG	2 cut(s)	352, 445
BseRI	GAGGAG	2 cut(s)	275, 495
BseSI	GKGCMC	2 cut(s)	431, 495
BseXI	GCAGC	1 cut(s)	504
Bsh1236I	CGCG	3 cut(s)	249, 474, 566
BshFI	GGCC	4 cut(s)	74, 362, 429, 493
BsiSI	CCGG	5 cut(s)	294, 327, 342, 411, 579
BslI	CCNNNNNNNGG	6 cut(s)	41, 358, 394, 449, 565, 568
BsmAI	GTCTC	2 cut(s)	16, 109
BsmBI	CGTCTC	1 cut(s)	109
BsnI	GGCC	4 cut(s)	74, 362, 429, 493
Bso31I	GGTCTC	1 cut(s)	16
Bsp120I	GGGCCC	2 cut(s)	427, 491
Bsp1286I	GDGCHC	5 cut(s)	342, 431, 440, 462, 495
Bsp143I	GATC	2 cut(s)	397, 611
Bsp1720I	GCTNAGC	1 cut(s)	461
BspANI	GGCC	4 cut(s)	74, 362, 429, 493
BspCNI	CTCAG	2 cut(s)	25, 474
BspFNI	CGCG	3 cut(s)	249, 474, 566
BspLI	GGNNCC	4 cut(s)	399, 429, 439, 493
BspMAI	CTGCAG	1 cut(s)	522
BspPI	GGATC	3 cut(s)	392, 405, 619
BspTNI	GGTCTC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	594
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	2 cut(s)	352, 445
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	411, 424
BssMI	GATC	2 cut(s)	397, 611
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	3 cut(s)	39, 127, 202
BstC8I	GCNNGC	2 cut(s)	8, 328
BstDEI	CTNAG	2 cut(s)	12, 461
BstF5I	GGATG	2 cut(s)	186, 318
BstFNI	CGCG	3 cut(s)	249, 474, 566
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	2 cut(s)	400, 614
BstMAI	GTCTC	2 cut(s)	16, 109
BstMBI	GATC	2 cut(s)	397, 611
BstMWI	GCNNNNNNNGC	4 cut(s)	371, 435, 471, 483
BstNI	CCWGG	1 cut(s)	425
BstSCI	CCNGG	4 cut(s)	340, 410, 423, 578
BstSFI	CTRYAG	1 cut(s)	518
BstSLI	GKGCMC	2 cut(s)	431, 495
BstUI	CGCG	3 cut(s)	249, 474, 566
BstV1I	GCAGC	1 cut(s)	504
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	2 cut(s)	397, 611
BstYI	RGATCY	2 cut(s)	397, 611
BsuRI	GGCC	4 cut(s)	74, 362, 429, 493
BtsCI	GGATG	2 cut(s)	186, 318
Cac8I	GCNNGC	2 cut(s)	8, 328
CfoI	GCGC	1 cut(s)	251
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	6 cut(s)	48, 421, 427, 428, 491, 492
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	4 cut(s)	94, 313, 358, 544
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	2 cut(s)	12, 461
DpnI	GATC	2 cut(s)	399, 613
DpnII	GATC	2 cut(s)	397, 611
EaeI	YGGCCR	2 cut(s)	72, 360
EciI	GGCGGA	4 cut(s)	61, 248, 492, 501
Eco24I	GRGCYC	5 cut(s)	342, 431, 440, 462, 495
Eco31I	GGTCTC	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	48, 421
EcoO109I	RGGNCCY	2 cut(s)	427, 491
EcoRI	GAATTC	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	423
EcoT38I	GRGCYC	5 cut(s)	342, 431, 440, 462, 495
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	4 cut(s)	97, 316, 361, 547
FaiI	YATR	5 cut(s)	68, 95, 314, 359, 545
FatI	CATG	4 cut(s)	93, 312, 357, 543
FauI	CCCGC	3 cut(s)	331, 458, 520
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	4 cut(s)	252, 363, 475, 518
FokI	GGATG	2 cut(s)	173, 305
FriOI	GRGCYC	5 cut(s)	342, 431, 440, 462, 495
Fsp4HI	GCNGC	4 cut(s)	252, 363, 475, 518
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	4 cut(s)	252, 363, 475, 518
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	4 cut(s)	74, 362, 429, 493
HapII	CCGG	5 cut(s)	294, 327, 342, 411, 579
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	251
Hin1II	CATG	4 cut(s)	97, 316, 361, 547
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HincII	GTYRAC	2 cut(s)	205, 379
HindII	GTYRAC	2 cut(s)	205, 379
HinfI	GANTC	2 cut(s)	509, 588
HpaII	CCGG	5 cut(s)	294, 327, 342, 411, 579
HphI	GGTGA	3 cut(s)	115, 202, 547
Hpy166II	GTNNAC	3 cut(s)	118, 205, 379
Hpy188I	TCNGA	3 cut(s)	15, 348, 397
Hpy8I	GTNNAC	3 cut(s)	118, 205, 379
Hpy99I	CGWCG	4 cut(s)	43, 64, 230, 458
HpyAV	CCTTC	4 cut(s)	190, 223, 265, 394
HpyCH4III	ACNGT	3 cut(s)	39, 127, 202
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	66, 520, 547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	371, 435, 471, 483
HpyF3I	CTNAG	2 cut(s)	12, 461
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	4 cut(s)	97, 316, 361, 547
HspAI	GCGC	1 cut(s)	249
KroI	GCCGGC	1 cut(s)	326
KroNI	GCCGGC	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	397, 611
LmnI	GCTCC	4 cut(s)	167, 177, 288, 443
Lsp1109I	GCAGC	1 cut(s)	504
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	605
MalI	GATC	2 cut(s)	399, 613
MboI	GATC	2 cut(s)	397, 611
MboII	GAAGA	3 cut(s)	73, 82, 121
MflI	RGATCY	2 cut(s)	397, 611
MhlI	GDGCHC	5 cut(s)	342, 431, 440, 462, 495
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	1 cut(s)	574
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	2 cut(s)	518, 597
Mox20I	TGGCCA	1 cut(s)	74
MroNI	GCCGGC	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	74
MslI	CAYNNNNRTG	1 cut(s)	599
Msp20I	TGGCCA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	465
MspI	CCGG	5 cut(s)	294, 327, 342, 411, 579
MspR9I	CCNGG	4 cut(s)	342, 412, 425, 580
MvaI	CCWGG	1 cut(s)	425
MvnI	CGCG	3 cut(s)	249, 474, 566
MwoI	GCNNNNNNNGC	4 cut(s)	371, 435, 471, 483
NaeI	GCCGGC	1 cut(s)	328
NciI	CCSGG	3 cut(s)	342, 412, 580
NdeII	GATC	2 cut(s)	397, 611
NgoMIV	GCCGGC	1 cut(s)	326
NlaIII	CATG	4 cut(s)	97, 316, 361, 547
NlaIV	GGNNCC	4 cut(s)	399, 429, 439, 493
NmuCI	GTSAC	1 cut(s)	605
PdiI	GCCGGC	1 cut(s)	328
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	4 cut(s)	253, 364, 476, 519
PleI	GAGTC	2 cut(s)	517, 596
PpsI	GAGTC	2 cut(s)	517, 596
Psp6I	CCWGG	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	4 cut(s)	399, 429, 439, 493
PspOMI	GGGCCC	2 cut(s)	427, 491
PspPI	GGNCC	6 cut(s)	48, 421, 427, 428, 491, 492
PstI	CTGCAG	1 cut(s)	522
PsuI	RGATCY	2 cut(s)	397, 611
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	599
SatI	GCNGC	4 cut(s)	252, 363, 475, 518
Sau3AI	GATC	2 cut(s)	397, 611
Sau96I	GGNCC	6 cut(s)	48, 421, 427, 428, 491, 492
SchI	GAGTC	2 cut(s)	518, 597
ScrFI	CCNGG	4 cut(s)	342, 412, 425, 580
SduI	GDGCHC	5 cut(s)	342, 431, 440, 462, 495
SetI	ASST	7 cut(s)	57, 147, 164, 174, 215, 228, 285
SfcI	CTRYAG	1 cut(s)	518
SinI	GGWCC	2 cut(s)	48, 421
SmiMI	CAYNNNNRTG	1 cut(s)	599
Sse9I	AATT	1 cut(s)	574
StyD4I	CCNGG	4 cut(s)	340, 410, 423, 578
TaaI	ACNGT	3 cut(s)	39, 127, 202
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	336, 512
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	1 cut(s)	574
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	3 cut(s)	254, 365, 477
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	1 cut(s)	517
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	4 cut(s)	82, 301, 307, 617
TspGWI	ACGGA	3 cut(s)	145, 154, 624
Van91I	CCANNNNNTGG	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	48, 421
XapI	RAATTY	1 cut(s)	574
XmiI	GTMKAC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.