RLG00000002879

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
41067003 .. 41069852
2850 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002879

Sequence Viewer

Length: 2763 bp
ATGGCAGAAAGTGCAGTCACCTTTTTGGTTGACAGGCTCACGACATTACTCAAAGAAGAGGCGAAACTCTTGTCAGGGATCCGAGAACAGGTCGAGGACCTGGTTGATGAATTGGAGCGCATCAAGGCCTTCTTAAGGGTTGCTGACGCAAAGAAAGACAGCAATCCTCAGCTCCAAGTGTGGGTTAAACAAGTCAGAGATGTAGCTCATGAAATGGAAGATGCCCTTGATAAATTCAGGCTTTTCCATTCACACCATCACGGTCATGGATTCGGAGCTTCCCTTCATAAGCTTTCTTGTATCATCAAGAAATGGAAAGCTAAGCATCAAATTTCGGTTGATATTGAAAGAATAAACTCAAAAGTCAAAGACCTCTACGAGGGACATGAGAGATACAAACTTGTTGACCAAGCTGGCTCCAGCTCTGCTCGTCTGGTTCAGCGCCACAAGTTAGATCGAGGGGATGCTCTTTTACTGGAAGAGGCTGATCTTGTGGCAATTGGCGAGTGCAAAAAGCATCTGATTGAATTGCTTATGAAGGAAGACACTAGACGCCAGGTGGTTCCAGTAGCTGGGAAGGGTGGACTGGGGAAAACTACCTTGGTCAAGCAAGTCTACGAAGATCCAAAAGTTCAGAAACGTTTCAAGAAACCGGTCCCTGAAGATGAAGAAGTTGAAACCATGGATAACAATCAGCTAAGAGAGAGAATCAAAAAATTACTGCAGAATAGTAGGTACCTGATTGTTCTTGATGATATACGGCATATATCGGACTGGGATGCCATCAATCACGTAATGCCGAACAACAATCGTGGTAGCCGAGTAATGCTCTCTACTCGCTATGATAATGTAGCCTCTTCCTCTTGCTTGGGGAACGATGACATGCTCTACCATTTACAGCCCTTATCTCAAGAGGATTCTTGGACTCTTCTCTGCAGGAAGACATTTCATGGAGAGTCATGCCCACAAAATTTGGAGGAAATTTGTCGATGCATTCTGATGAAATGCGAGGGACTGCCCCTTGCAATTGTGGCCATCAGCGCTGTACTAGCTTTAAAAGACAAGAGAAATGTGGATGAATGGGCTGCTGTTTCTGGAAGCATTGGAGCTGAAATTGACAGAAATGATCAACTTTACAACCTGAAAAAATTTCTGCATCTCAGTTACAGTGATTTACCATACCATCTGAAATCTTGTTTCTTATATCTGAGCATCTTTCCTGATCACTACAAAATTGAGCATATGAAATTAATTCGGTTATGGTTAGCTGAAGGATTTGTTATTGGAAAAGAGGGAAGGACACCAGAAGAAGCTGCAGAGAGTTACCTCAGAGAGTTATTGGACAGAAGTTTGATTCAAGCAGCAGAGACATCAACTGATGGGAGAGTTAAATCATATCGCATCCATGATCTTTTACGGGAGATTGTCATTTTGAAGTCTAAAGAGCAAAACTTTGCAGCAATAGAAAAAGATCAAGGTACAATGTGGCCTGAGAAAGTTCGAAGACTATCAATAGTTAACACCCTGCATAATATACATCAAAAGAGGACACCATCTCGACTTCGTTCTTTGCTCATTTTTGGGGTGGAAGATTCACTTACTGATTTTCCCATACCAAAATTGTTTCCTACCGGTCTTCAGTTGCTTACTGTATTAGACTTAGAAGGTGCACATCTGGAAATGTTTCCAAATGAGGTTGTCAAGCTTCTTCTTCTCAAGTACCTTAGCTTGAGGCATACAAAGGTAAAACAAATTCCAAGCTCCATCAAGAAGCTACAAAACCTAGAGACCTTGGACCTTAAACACTCCCATGTTGTTGAATTACCTGCGGAGATTTTGAATCTCAAGCGACTTCGTCATCTCCTGGTTTATCGTTATGAGGTTGAGTCATATGCCCGATTTAATGCCAGAAAAGGAGTTAAGATTCCGGCAGGGATAAGTAGCTTGCAGTCGCTCCAAAAGCTCTGCTTTATAGAGGCAAATCAATGCAGTGGTGCTTTAATGGCAGAGCTTGGGAGAATGAACCAACTAAGGAGGTTAGGCATTTATAAGTTGAGAGAAGAAGATGGGGCCACCTTATGCTCATCCGTCCAAAATATGACCAGCCTTCGTTCGTTGTCTGTATTTTCAGCAGAGAAAGAGAAGATAATTGATCTTAGCCACATTTCTCGTGCTCCTCCATTTCTTCAGCGACTATACTTGGCAGGGCGTTTAGAAAACTTACCCCACTGGATTTCTTCTCTTCAAAACCTGGTCAGACTGTTTCTAAAATGGAGTCGGCTGAAGAAGGATCCTCTAGTACATCTTCGGAGTTTGCCAAACCTGGTACATCTTGAACTTTTACAAGTTTATGATGGGGAAAGCTTGCACTTTGAGGCAGGAGGGTTTCCAAGTCTGAAGTTATTAGGTATTGATAAATTGGATGAACTACAATTGGTAACCATAGAGGAGGGAGCAATGCCTTGTCTAGAAAAGCTAATTATCCAGCGCTGCAAATGCTTGAAGAAGGTCCCATCTGGCATTGAACATTTAACCAATTTAAAGCTGCTTGAGTTTTTCGATATGCCAGATGAATTAATCATGCCACTACATCCAGATGGTGGAGAAGATCACTGGAAAGTCGCTCATGTTCCAGCAGTTTATTATTCATATTGGAGAGGTGGGGGTTGGGACGTCTATTCATTATTCAATGATGTAAAGAGTTTTAATTCGGGTACTTCTGCCATGAGGAGGCTCGAACCTAATATTCTAGGGAAGGTGTAG

Protein Analysis

921

Amino Acids

105.42

Weight (kDa)

8.54

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 91 4.6e-26 Rx N-terminal domain
NB-ARC PF00931 171 - 216 5.4e-07 NB-ARC domain
nSTAND_NTPase5 PF25199 173 - 282 8.2e-06 Novel STAND NTPase 5
NB-ARC PF00931 221 - 320 1.7e-18 NB-ARC domain
WHD_DRP PF23559 405 - 476 9.3e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 521 - 850 8.2e-49 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000482)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica MD06G1024000.v1.1
prunus_persica Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis pycom16g25280
rosa_chinensis RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii Rroxscaffold_3G00246720
rosa_rugosa Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2049
AatII GACGTC 1 cut(s) 2676
Acc36I ACCTGC 1 cut(s) 1834
Acc65I GGTACC 1 cut(s) 735
AccB1I GGYRCC 1 cut(s) 735
AccB7I CCANNNNNTGG 2 cut(s) 572, 2600
AccI GTMKAC 1 cut(s) 615
AciI CCGC 1 cut(s) 1829
AclI AACGTT 1 cut(s) 640
AclWI GGATC 5 cut(s) 73, 86, 617, 2285, 2298
AcoI YGGCCR 1 cut(s) 1032
AcsI RAATTY 6 cut(s) 233, 330, 970, 981, 1148, 1752
AcuI CTGAAG 6 cut(s) 681, 1290, 1622, 2171, 2303, 2417
AcyI GRCGYC 2 cut(s) 553, 2673
AfaI GTAC 7 cut(s) 737, 1047, 1480, 1721, 2301, 2328, 2716
AfeI AGCGCT 2 cut(s) 1042, 2489
AfiI CCNNNNNNNGG 7 cut(s) 88, 135, 181, 379, 572, 2600, 2730
AflII CTTAAG 1 cut(s) 133
AgeI ACCGGT 2 cut(s) 652, 1631
AjnI CCWGG 5 cut(s) 99, 555, 1863, 2250, 2322
AjuI GAANNNNNNNTTGG 2 cut(s) 584, 616
Alw21I GWGCWC 2 cut(s) 1672, 2176
Alw26I GTCTC 2 cut(s) 1361, 1781
Alw44I GTGCAC 1 cut(s) 1668
AlwI GGATC 5 cut(s) 73, 86, 617, 2285, 2298
AlwNI CAGNNNCTG 1 cut(s) 572
Aor51HI AGCGCT 2 cut(s) 1042, 2489
AoxI GGCC 4 cut(s) 126, 1032, 1487, 2070
ApaLI GTGCAC 1 cut(s) 1668
ApeKI GCWGC 6 cut(s) 1085, 1313, 1361, 1457, 2490, 2545
ApoI RAATTY 6 cut(s) 233, 330, 970, 981, 1148, 1752
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AseI ATTAAT 2 cut(s) 1250, 2576
AsiGI ACCGGT 2 cut(s) 652, 1631
Asp700I GAANNNNTTC 2 cut(s) 641, 1683
Asp718I GGTACC 1 cut(s) 735
AspLEI GCGC 4 cut(s) 120, 444, 1043, 2490
AspS9I GGNCC 5 cut(s) 97, 655, 1795, 2070, 2509
AsuHPI GGTGA 1 cut(s) 10
AsuII TTCGAA 1 cut(s) 1501
AvaII GGWCC 4 cut(s) 97, 655, 1795, 2509
BaeGI GKGCMC 1 cut(s) 1672
BalI TGGCCA 1 cut(s) 1034
BamHI GGATCC 2 cut(s) 78, 2290
BanI GGYRCC 1 cut(s) 735
BauI CACGAG 1 cut(s) 2169
BbsI GAAGAC 4 cut(s) 549, 947, 1510, 1628
Bbv12I GWGCWC 2 cut(s) 1672, 2176
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 6 cut(s) 1072, 1300, 1373, 1469, 2477, 2532
BceAI ACGGC 1 cut(s) 776
BciT130I CCWGG 5 cut(s) 101, 557, 1865, 2252, 2324
BclI TGATCA 2 cut(s) 1126, 1222
BcoDI GTCTC 2 cut(s) 1361, 1781
BfaI CTAG 6 cut(s) 549, 1049, 1784, 2297, 2468, 2750
BfmI CTRYAG 3 cut(s) 722, 934, 1314
BfoI RGCGCY 3 cut(s) 445, 1044, 2491
BfrI CTTAAG 1 cut(s) 133
BfuAI ACCTGC 1 cut(s) 1834
BisI GCNGC 6 cut(s) 1086, 1314, 1362, 1458, 2491, 2546
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 6 cut(s) 1087, 1315, 1363, 1459, 2492, 2547
Bme1390I CCNGG 5 cut(s) 101, 557, 1865, 2252, 2324
Bme18I GGWCC 4 cut(s) 97, 655, 1795, 2509
BmgT120I GGNCC 5 cut(s) 97, 655, 1795, 2070, 2509
BmiI GGNNCC 8 cut(s) 80, 418, 564, 657, 737, 2071, 2292, 2511
BmrFI CCNGG 5 cut(s) 101, 557, 1865, 2252, 2324
BmrI ACTGGG 2 cut(s) 596, 784
BmuI ACTGGG 2 cut(s) 596, 784
BpiI GAAGAC 4 cut(s) 549, 947, 1510, 1628
BplI GAGNNNNNCTC 2 cut(s) 813, 845
BpmI CTGGAG 1 cut(s) 403
Bpu10I CCTNAGC 2 cut(s) 168, 1724
Bpu1102I GCTNAGC 1 cut(s) 321
Bpu14I TTCGAA 1 cut(s) 1501
BpuEI CTTGAG 5 cut(s) 894, 1700, 1750, 1829, 2570
BsaAI YACGTR 1 cut(s) 793
BsaBI GATNNNNATC 1 cut(s) 690
BsaHI GRCGYC 2 cut(s) 553, 2673
BsaI GGTCTC 1 cut(s) 1781
BsaJI CCNNGG 3 cut(s) 600, 681, 1791
BsaWI WCCGGW 2 cut(s) 652, 1631
Bsc4I CCNNNNNNNGG 7 cut(s) 88, 135, 181, 379, 572, 2600, 2730
Bse118I RCCGGY 2 cut(s) 652, 1631
Bse1I ACTGG 6 cut(s) 480, 566, 591, 779, 2234, 2618
Bse3DI GCAATG 1 cut(s) 2463
Bse8I GATNNNNATC 1 cut(s) 690
BseBI CCWGG 5 cut(s) 101, 557, 1865, 2252, 2324
BseDI CCNNGG 3 cut(s) 600, 681, 1791
BseGI GGATG 7 cut(s) 469, 784, 1081, 1401, 2084, 2428, 2590
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 7 cut(s) 88, 135, 181, 379, 572, 2600, 2730
BseMI GCAATG 1 cut(s) 2463
BseMII CTCAG 5 cut(s) 182, 1174, 1199, 1342, 1482
BseNI ACTGG 6 cut(s) 480, 566, 591, 779, 2234, 2618
BseRI GAGGAG 3 cut(s) 2166, 2462, 2743
BseSI GKGCMC 1 cut(s) 1672
BseXI GCAGC 6 cut(s) 1072, 1300, 1373, 1469, 2477, 2532
BseYI CCCAGC 1 cut(s) 572
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 4 cut(s) 128, 1034, 1489, 2072
BshNI GGYRCC 1 cut(s) 735
BshTI ACCGGT 2 cut(s) 652, 1631
BsiHKAI GWGCWC 2 cut(s) 1672, 2176
BsiSI CCGG 3 cut(s) 653, 1632, 1928
BslFI GGGAC 5 cut(s) 396, 641, 1026, 2495, 2684
BslI CCNNNNNNNGG 7 cut(s) 88, 135, 181, 379, 572, 2600, 2730
BsmAI GTCTC 2 cut(s) 1361, 1781
BsmFI GGGAC 5 cut(s) 396, 641, 1026, 2495, 2684
BsmI GAATGC 1 cut(s) 993
BsnI GGCC 4 cut(s) 128, 1034, 1489, 2072
Bso31I GGTCTC 1 cut(s) 1781
Bsp119I TTCGAA 1 cut(s) 1501
Bsp1286I GDGCHC 2 cut(s) 1672, 2176
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp19I CCATGG 1 cut(s) 681
BspACI CCGC 1 cut(s) 1829
BspANI GGCC 4 cut(s) 128, 1034, 1489, 2072
BspCNI CTCAG 5 cut(s) 181, 1173, 1200, 1341, 1483
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 8 cut(s) 80, 418, 564, 657, 737, 2071, 2292, 2511
BspMAI CTGCAG 3 cut(s) 726, 938, 1318
BspMI ACCTGC 1 cut(s) 1834
BspPI GGATC 5 cut(s) 73, 86, 617, 2285, 2298
BspT104I TTCGAA 1 cut(s) 1501
BspT107I GGYRCC 1 cut(s) 735
BspTI CTTAAG 1 cut(s) 133
BspTNI GGTCTC 1 cut(s) 1781
BsrDI GCAATG 1 cut(s) 2463
BsrFI RCCGGY 2 cut(s) 652, 1631
BsrI ACTGG 6 cut(s) 480, 566, 591, 779, 2234, 2618
BssAI RCCGGY 2 cut(s) 652, 1631
BssECI CCNNGG 3 cut(s) 600, 681, 1791
BssNI GRCGYC 2 cut(s) 553, 2673
BssSI CACGAG 1 cut(s) 2169
BssT1I CCWWGG 3 cut(s) 600, 681, 1791
Bst2BI CACGAG 1 cut(s) 2169
Bst2UI CCWGG 5 cut(s) 101, 557, 1865, 2252, 2324
Bst4CI ACNGT 4 cut(s) 263, 1169, 1651, 2262
Bst6I CTCTTC 5 cut(s) 51, 474, 862, 933, 2247
BstACI GRCGYC 2 cut(s) 553, 2673
BstAFI CTTAAG 1 cut(s) 133
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBAI YACGTR 1 cut(s) 793
BstBI TTCGAA 1 cut(s) 1501
BstC8I GCNNGC 3 cut(s) 415, 1946, 2366
BstDSI CCRYGG 1 cut(s) 681
BstEII GGTNACC 1 cut(s) 2437
BstENI CCTNNNNNAGG 2 cut(s) 133, 377
BstF5I GGATG 7 cut(s) 469, 784, 1081, 1401, 2084, 2428, 2590
BstH2I RGCGCY 3 cut(s) 445, 1044, 2491
BstHHI GCGC 4 cut(s) 120, 444, 1043, 2490
BstMAI GTCTC 2 cut(s) 1361, 1781
BstMWI GCNNNNNNNGC 7 cut(s) 11, 1031, 1040, 1049, 1960, 2003, 2496
BstNI CCWGG 5 cut(s) 101, 557, 1865, 2252, 2324
BstNSI RCATGY 1 cut(s) 886
BstPI GGTNACC 1 cut(s) 2437
BstSCI CCNGG 5 cut(s) 99, 555, 1863, 2250, 2322
BstSFI CTRYAG 3 cut(s) 722, 934, 1314
BstSLI GKGCMC 1 cut(s) 1672
BstV1I GCAGC 6 cut(s) 1072, 1300, 1373, 1469, 2477, 2532
BstV2I GAAGAC 4 cut(s) 549, 947, 1510, 1628
BstX2I RGATCY 3 cut(s) 78, 622, 2290
BstYI RGATCY 3 cut(s) 78, 622, 2290
BsuRI GGCC 4 cut(s) 128, 1034, 1489, 2072
BtgI CCRYGG 1 cut(s) 681
BtsCI GGATG 7 cut(s) 469, 784, 1081, 1401, 2084, 2428, 2590
BtsI GCAGTG 1 cut(s) 1996
BtsIMutI CAGTG 4 cut(s) 1174, 1996, 2227, 2611
BveI ACCTGC 1 cut(s) 1834
Cac8I GCNNGC 3 cut(s) 415, 1946, 2366
CaiI CAGNNNCTG 1 cut(s) 572
CciI TCATGA 1 cut(s) 208
CfoI GCGC 4 cut(s) 120, 444, 1043, 2490
Cfr10I RCCGGY 2 cut(s) 652, 1631
Cfr13I GGNCC 5 cut(s) 97, 655, 1795, 2070, 2509
CseI GACGC 2 cut(s) 155, 561
CsiI ACCWGGT 3 cut(s) 99, 2250, 2322
Csp6I GTAC 7 cut(s) 736, 1046, 1479, 1720, 2300, 2327, 2715
CspAI ACCGGT 2 cut(s) 652, 1631
CspCI CAANNNNNGTGG 4 cut(s) 793, 828, 954, 989
CviQI GTAC 7 cut(s) 736, 1046, 1479, 1720, 2300, 2327, 2715
DraI TTTAAA 2 cut(s) 1056, 2541
EaeI YGGCCR 1 cut(s) 1032
Eam1104I CTCTTC 5 cut(s) 51, 474, 862, 933, 2247
EarI CTCTTC 5 cut(s) 51, 474, 862, 933, 2247
Eco130I CCWWGG 3 cut(s) 600, 681, 1791
Eco147I AGGCCT 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 1781
Eco47I GGWCC 4 cut(s) 97, 655, 1795, 2509
Eco47III AGCGCT 2 cut(s) 1042, 2489
Eco57I CTGAAG 6 cut(s) 681, 1290, 1622, 2171, 2303, 2417
Eco91I GGTNACC 1 cut(s) 2437
EcoNI CCTNNNNNAGG 2 cut(s) 133, 377
EcoO109I RGGNCCY 2 cut(s) 97, 2509
EcoO65I GGTNACC 1 cut(s) 2437
EcoRII CCWGG 5 cut(s) 99, 555, 1863, 2250, 2322
EcoT14I CCWWGG 3 cut(s) 600, 681, 1791
EcoT22I ATGCAT 1 cut(s) 995
ErhI CCWWGG 3 cut(s) 600, 681, 1791
FalI AAGNNNNNCTT 8 cut(s) 116, 148, 210, 242, 1581, 1613, 1952, 1984
FaqI GGGAC 5 cut(s) 396, 641, 1026, 2495, 2684
FauNDI CATATG 2 cut(s) 1242, 1891
FbaI TGATCA 2 cut(s) 1126, 1222
FblI GTMKAC 1 cut(s) 615
Fnu4HI GCNGC 6 cut(s) 1086, 1314, 1362, 1458, 2491, 2546
FokI GGATG 7 cut(s) 476, 791, 1088, 1388, 2071, 2435, 2577
Fsp4HI GCNGC 6 cut(s) 1086, 1314, 1362, 1458, 2491, 2546
FspBI CTAG 6 cut(s) 549, 1049, 1784, 2297, 2468, 2750
GlaI GCGC 4 cut(s) 119, 443, 1042, 2489
GluI GCNGC 6 cut(s) 1086, 1314, 1362, 1458, 2491, 2546
GsaI CCCAGC 1 cut(s) 576
GsuI CTGGAG 1 cut(s) 403
HaeII RGCGCY 3 cut(s) 445, 1044, 2491
HaeIII GGCC 4 cut(s) 128, 1034, 1489, 2072
HapII CCGG 3 cut(s) 653, 1632, 1928
HgaI GACGC 2 cut(s) 155, 561
HhaI GCGC 4 cut(s) 120, 444, 1043, 2490
Hin1I GRCGYC 2 cut(s) 553, 2673
Hin6I GCGC 4 cut(s) 118, 442, 1041, 2488
HinP1I GCGC 4 cut(s) 118, 442, 1041, 2488
HincII GTYRAC 3 cut(s) 31, 406, 1519
HindII GTYRAC 3 cut(s) 31, 406, 1519
HindIII AAGCTT 3 cut(s) 290, 1703, 2362
HpaI GTTAAC 1 cut(s) 1519
HpaII CCGG 3 cut(s) 653, 1632, 1928
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 6 cut(s) 31, 406, 584, 616, 1519, 1670
Hpy8I GTNNAC 6 cut(s) 31, 406, 584, 616, 1519, 1670
HpyCH4III ACNGT 4 cut(s) 263, 1169, 1651, 2262
HpyCH4IV ACGT 3 cut(s) 640, 792, 2673
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 1031, 1040, 1049, 1960, 2003, 2496
HpySE526I ACGT 3 cut(s) 640, 792, 2673
Hsp92I GRCGYC 2 cut(s) 553, 2673
HspAI GCGC 4 cut(s) 118, 442, 1041, 2488
KpnI GGTACC 1 cut(s) 739
Ksp22I TGATCA 2 cut(s) 1126, 1222
KspAI GTTAAC 1 cut(s) 1519
LmnI GCTCC 9 cut(s) 115, 177, 275, 422, 1106, 1766, 1959, 2179, 2453
Lsp1109I GCAGC 6 cut(s) 1072, 1300, 1373, 1469, 2477, 2532
MabI ACCWGGT 3 cut(s) 99, 2250, 2322
MaeI CTAG 6 cut(s) 549, 1049, 1784, 2297, 2468, 2750
MaeII ACGT 3 cut(s) 640, 792, 2673
MaeIII GTNAC 4 cut(s) 16, 1163, 1322, 2437
MfeI CAATTG 3 cut(s) 498, 1026, 2432
MflI RGATCY 3 cut(s) 78, 622, 2290
MhlI GDGCHC 2 cut(s) 1672, 2176
MlsI TGGCCA 1 cut(s) 1034
MluNI TGGCCA 1 cut(s) 1034
MlyI GAGTC 4 cut(s) 919, 965, 1895, 2284
Mox20I TGGCCA 1 cut(s) 1034
Mph1103I ATGCAT 1 cut(s) 995
MroXI GAANNNNTTC 2 cut(s) 641, 1683
MscI TGGCCA 1 cut(s) 1034
MslI CAYNNNNRTG 4 cut(s) 264, 998, 1809, 2595
Msp20I TGGCCA 1 cut(s) 1034
MspCI CTTAAG 1 cut(s) 133
MspI CCGG 3 cut(s) 653, 1632, 1928
MspR9I CCNGG 5 cut(s) 101, 557, 1865, 2252, 2324
MunI CAATTG 3 cut(s) 498, 1026, 2432
Mva1269I GAATGC 1 cut(s) 993
MvaI CCWGG 5 cut(s) 101, 557, 1865, 2252, 2324
MwoI GCNNNNNNNGC 7 cut(s) 11, 1031, 1040, 1049, 1960, 2003, 2496
NcoI CCATGG 1 cut(s) 681
NdeI CATATG 2 cut(s) 1242, 1891
NlaIV GGNNCC 8 cut(s) 80, 418, 564, 657, 737, 2071, 2292, 2511
NmeAIII GCCGAG 1 cut(s) 845
NmuCI GTSAC 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 995
NspI RCATGY 1 cut(s) 886
NspV TTCGAA 1 cut(s) 1501
PagI TCATGA 1 cut(s) 208
PceI AGGCCT 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 817
PctI GAATGC 1 cut(s) 993
PdmI GAANNNNTTC 2 cut(s) 641, 1683
PfeI GAWTC 7 cut(s) 270, 708, 917, 1354, 1592, 1840, 1924
PflFI GACNNNGTC 1 cut(s) 1854
PflMI CCANNNNNTGG 2 cut(s) 572, 2600
PinAI ACCGGT 2 cut(s) 652, 1631
PkrI GCNGC 6 cut(s) 1087, 1315, 1363, 1459, 2492, 2547
PleI GAGTC 4 cut(s) 919, 964, 1894, 2283
PpsI GAGTC 4 cut(s) 919, 964, 1894, 2283
Ppu21I YACGTR 1 cut(s) 793
PpuMI RGGWCCY 2 cut(s) 97, 2509
PshBI ATTAAT 2 cut(s) 1250, 2576
PsiI TTATAA 1 cut(s) 2049
Psp1406I AACGTT 1 cut(s) 640
Psp5II RGGWCCY 2 cut(s) 97, 2509
Psp6I CCWGG 5 cut(s) 99, 555, 1863, 2250, 2322
PspEI GGTNACC 1 cut(s) 2437
PspFI CCCAGC 1 cut(s) 572
PspGI CCWGG 5 cut(s) 99, 555, 1863, 2250, 2322
PspN4I GGNNCC 8 cut(s) 80, 418, 564, 657, 737, 2071, 2292, 2511
PspPI GGNCC 5 cut(s) 97, 655, 1795, 2070, 2509
PspPPI RGGWCCY 2 cut(s) 97, 2509
PstI CTGCAG 3 cut(s) 726, 938, 1318
PstNI CAGNNNCTG 1 cut(s) 572
PsuI RGATCY 3 cut(s) 78, 622, 2290
PsyI GACNNNGTC 1 cut(s) 1854
RsaI GTAC 7 cut(s) 737, 1047, 1480, 1721, 2301, 2328, 2716
RsaNI GTAC 7 cut(s) 736, 1046, 1479, 1720, 2300, 2327, 2715
RseI CAYNNNNRTG 4 cut(s) 264, 998, 1809, 2595
SatI GCNGC 6 cut(s) 1086, 1314, 1362, 1458, 2491, 2546
Sau96I GGNCC 5 cut(s) 97, 655, 1795, 2070, 2509
SchI GAGTC 4 cut(s) 919, 965, 1895, 2284
ScrFI CCNGG 5 cut(s) 101, 557, 1865, 2252, 2324
SduI GDGCHC 2 cut(s) 1672, 2176
SexAI ACCWGGT 3 cut(s) 99, 2250, 2322
SfcI CTRYAG 3 cut(s) 722, 934, 1314
SfuI TTCGAA 1 cut(s) 1501
SinI GGWCC 4 cut(s) 97, 655, 1795, 2509
SmiMI CAYNNNNRTG 4 cut(s) 264, 998, 1809, 2595
SmlI CTYRAG 6 cut(s) 133, 909, 1715, 1729, 1844, 2549
SmoI CTYRAG 6 cut(s) 133, 909, 1715, 1729, 1844, 2549
SseBI AGGCCT 1 cut(s) 128
SsiI CCGC 1 cut(s) 1829
SspI AATATT 1 cut(s) 2746
SspMI CTAG 6 cut(s) 549, 1049, 1784, 2297, 2468, 2750
StuI AGGCCT 1 cut(s) 128
StyD4I CCNGG 5 cut(s) 99, 555, 1863, 2250, 2322
StyI CCWWGG 3 cut(s) 600, 681, 1791
TaaI ACNGT 4 cut(s) 263, 1169, 1651, 2262
TaiI ACGT 3 cut(s) 643, 795, 2676
TaqI TCGA 7 cut(s) 93, 457, 988, 1501, 1558, 2559, 2736
TatI WGTACW 2 cut(s) 1045, 2299
TfiI GAWTC 7 cut(s) 270, 708, 917, 1354, 1592, 1840, 1924
TscAI CASTG 4 cut(s) 1174, 1996, 2234, 2618
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 6 cut(s) 1085, 1313, 1361, 1457, 2490, 2545
Tsp45I GTSAC 1 cut(s) 16
TspGWI ACGGA 1 cut(s) 2077
TspRI CASTG 4 cut(s) 1174, 1996, 2234, 2618
Tth111I GACNNNGTC 1 cut(s) 1854
Van91I CCANNNNNTGG 2 cut(s) 572, 2600
Vha464I CTTAAG 1 cut(s) 133
VneI GTGCAC 1 cut(s) 1668
VpaK11BI GGWCC 4 cut(s) 97, 655, 1795, 2509
VspI ATTAAT 2 cut(s) 1250, 2576
XagI CCTNNNNNAGG 2 cut(s) 133, 377
XapI RAATTY 6 cut(s) 233, 330, 970, 981, 1148, 1752
XbaI TCTAGA 1 cut(s) 2467
XceI RCATGY 1 cut(s) 886
XcmI CCANNNNNNNNNTGG 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 615
XmnI GAANNNNTTC 2 cut(s) 641, 1683
XspI CTAG 6 cut(s) 549, 1049, 1784, 2297, 2468, 2750
ZraI GACGTC 1 cut(s) 2674
Zsp2I ATGCAT 1 cut(s) 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.