Rh7CG285500

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
28991509 .. 29020098
28590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG285500.1

Sequence Viewer

Length: 1083 bp
ATGTTTCCAAGAGAGGTTGTCAAGCTTCTTCTTCTCAGGTATCTTAGCTTGAGGCATACAAAGGTGAAACAAATTCCAGGCTCCATCAAGAAGCTACAAAACTTAGAGACCTTGGATCTTAAACACTCGCAAGTTGTTGAATTACCTTCTGAGATTTTGAATCTCAAGCGACTTCGTCATCTCCTGGTGTATCGTTATGAGGTTGAGTCATACGCACGCTTCAATGCCAGAAAAGGAGTTAAGGTCCCTGCAGGAATATGTGGCTTGCAATTGCTCCAAAAGCTCTGCTTTATAGAGGCAAATCAAGACAATGGTGCTTTAATGGCAGAGCTCGGGAGAATGAACCAACTAAGGAGGTTAGGCATTTTCAAGTTGAGAAAAGAAGATGGGGTCACCTTATGCTCGTCCATCCAAAATATGACCAATCTTCGCTCGTTCTCTGTATCTTCAACAGAGAAGGACAAGATAATTGATCTTAGCCACATTTCTCGTGCTCCTCCATTTCTTCAGCGACTCTACTTGACAGGTCGTTTAGAAAAGTTACCACACTGGATTTCTTCTCTTCAAAACCTGGTCAGACTGTTTCTAAAATGGAGTCGGTTGAAGGAGGATCCTCTAGTACATCTTCAGGGTTTGCCAAACCTGGTACATCTTGAACTGCTACAAGTTTATGATGGAGGAAGCTTGCATTTTGAGGCAGGAGGGTTTCCAAGTCTGAAGTTATTAGGTATTGATAAATTGGATAAGCTACAATCAGTAACCATAGAGGAGGGAGCAATGCCTTGTCTAGAAAAGCTAATTATCCAGCGGTGTAAATTGTTGAAGAAGGTCCCGTCTGGCATTGAACATTTAACCAATTTAAAGCTGCTTGAATTTTTCGATATGCCAGATGAATTAATCATGCCACTACATCCAGATGGTGGAGAAGATCATTGGAAAGTTGCTCATGTTCCAGCAGTTTATTATTCCTATTGGAGAGGTGGAGGTTGGGACGTCTATTCATTAGTCAATGAAGGGGAGAGTTCTAATTCGGGTACTTCTGCTGTGAGGAGGTTTGAACGTAGTATTCTGTGGAAGGTGTAG

Protein Analysis

360

Amino Acids

41.23

Weight (kDa)

9.4

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 5 - 290 7.7e-46 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000482)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica MD06G1024000.v1.1
prunus_persica Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis pycom16g25280
rosa_chinensis RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii Rroxscaffold_3G00246720
rosa_rugosa Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 996
AccB7I CCANNNNNTGG 1 cut(s) 920
AciI CCGC 1 cut(s) 808
AclWI GGATC 3 cut(s) 123, 605, 618
AcsI RAATTY 2 cut(s) 72, 872
AcuI CTGAAG 3 cut(s) 491, 611, 737
AcyI GRCGYC 1 cut(s) 993
AfaI GTAC 3 cut(s) 621, 648, 1036
AfiI CCNNNNNNNGG 1 cut(s) 920
AjnI CCWGG 4 cut(s) 76, 183, 570, 642
AluBI AGCT 9 cut(s) 25, 48, 94, 283, 331, 684, 748, 796, 865
AluI AGCT 9 cut(s) 25, 48, 94, 283, 331, 684, 748, 796, 865
Alw21I GWGCWC 2 cut(s) 333, 496
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 3 cut(s) 123, 605, 618
Ama87I CYCGRG 1 cut(s) 332
ApeKI GCWGC 1 cut(s) 865
ApoI RAATTY 2 cut(s) 72, 872
AseI ATTAAT 1 cut(s) 896
AspS9I GGNCC 2 cut(s) 244, 829
AsuHPI GGTGA 2 cut(s) 76, 385
AvaI CYCGRG 1 cut(s) 332
AvaII GGWCC 2 cut(s) 244, 829
BamHI GGATCC 1 cut(s) 610
BanII GRGCYC 1 cut(s) 333
BauI CACGAG 1 cut(s) 489
Bbv12I GWGCWC 2 cut(s) 333, 496
BbvI GCAGC 1 cut(s) 852
BccI CCATC 5 cut(s) 92, 380, 416, 668, 911
BciT130I CCWGG 4 cut(s) 78, 185, 572, 644
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 2 cut(s) 617, 788
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 1 cut(s) 866
BlsI GCNGC 1 cut(s) 867
Bme1390I CCNGG 4 cut(s) 78, 185, 572, 644
Bme18I GGWCC 2 cut(s) 244, 829
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 244, 829
BmiI GGNNCC 4 cut(s) 82, 246, 612, 831
BmrFI CCNGG 4 cut(s) 78, 185, 572, 644
BpuEI CTTGAG 2 cut(s) 70, 149
BsaHI GRCGYC 1 cut(s) 993
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 920
Bse1I ACTGG 1 cut(s) 554
Bse3DI GCAATG 1 cut(s) 783
BseBI CCWGG 4 cut(s) 78, 185, 572, 644
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 2 cut(s) 408, 910
BseLI CCNNNNNNNGG 1 cut(s) 920
BseMI GCAATG 1 cut(s) 783
BseMII CTCAG 2 cut(s) 49, 141
BseNI ACTGG 1 cut(s) 554
BseRI GAGGAG 3 cut(s) 486, 782, 1063
BseXI GCAGC 1 cut(s) 852
BsiHKAI GWGCWC 2 cut(s) 333, 496
BsiHKCI CYCGRG 1 cut(s) 332
BslFI GGGAC 3 cut(s) 230, 815, 1004
BslI CCNNNNNNNGG 1 cut(s) 920
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 3 cut(s) 230, 815, 1004
Bso31I GGTCTC 1 cut(s) 101
BsoBI CYCGRG 1 cut(s) 332
Bsp1286I GDGCHC 2 cut(s) 333, 496
Bsp143I GATC 4 cut(s) 115, 472, 610, 928
BspACI CCGC 1 cut(s) 808
BspCNI CTCAG 2 cut(s) 48, 142
BspLI GGNNCC 4 cut(s) 82, 246, 612, 831
BspMAI CTGCAG 1 cut(s) 253
BspPI GGATC 3 cut(s) 123, 605, 618
BspTNI GGTCTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 783
BsrI ACTGG 1 cut(s) 554
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 4 cut(s) 115, 472, 610, 928
BssNI GRCGYC 1 cut(s) 993
BssSI CACGAG 1 cut(s) 489
BssT1I CCWWGG 1 cut(s) 111
Bst2BI CACGAG 1 cut(s) 489
Bst2UI CCWGG 4 cut(s) 78, 185, 572, 644
Bst4CI ACNGT 1 cut(s) 582
Bst6I CTCTTC 1 cut(s) 567
BstACI GRCGYC 1 cut(s) 993
BstC8I GCNNGC 3 cut(s) 217, 266, 686
BstDEI CTNAG 6 cut(s) 35, 44, 103, 150, 350, 476
BstEII GGTNACC 1 cut(s) 391
BstF5I GGATG 2 cut(s) 408, 910
BstKTI GATC 4 cut(s) 118, 475, 613, 931
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 4 cut(s) 115, 472, 610, 928
BstMWI GCNNNNNNNGC 2 cut(s) 280, 323
BstNI CCWGG 4 cut(s) 78, 185, 572, 644
BstPI GGTNACC 1 cut(s) 391
BstSCI CCNGG 4 cut(s) 76, 183, 570, 642
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 852
BstX2I RGATCY 2 cut(s) 115, 610
BstYI RGATCY 2 cut(s) 115, 610
BtsCI GGATG 2 cut(s) 408, 910
BtsIMutI CAGTG 1 cut(s) 547
Cac8I GCNNGC 3 cut(s) 217, 266, 686
Cfr13I GGNCC 2 cut(s) 244, 829
CsiI ACCWGGT 2 cut(s) 570, 642
Csp6I GTAC 3 cut(s) 620, 647, 1035
CviAII CATG 2 cut(s) 901, 947
CviQI GTAC 3 cut(s) 620, 647, 1035
DdeI CTNAG 6 cut(s) 35, 44, 103, 150, 350, 476
DpnI GATC 4 cut(s) 117, 474, 612, 930
DpnII GATC 4 cut(s) 115, 472, 610, 928
DraI TTTAAA 1 cut(s) 861
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 101
Eco47I GGWCC 2 cut(s) 244, 829
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 3 cut(s) 491, 611, 737
Eco88I CYCGRG 1 cut(s) 332
Eco91I GGTNACC 1 cut(s) 391
EcoICRI GAGCTC 1 cut(s) 331
EcoO109I RGGNCCY 2 cut(s) 244, 829
EcoO65I GGTNACC 1 cut(s) 391
EcoRII CCWGG 4 cut(s) 76, 183, 570, 642
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 2 cut(s) 904, 950
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FaqI GGGAC 3 cut(s) 230, 815, 1004
FatI CATG 2 cut(s) 900, 946
Fnu4HI GCNGC 1 cut(s) 866
FokI GGATG 2 cut(s) 395, 897
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 1 cut(s) 866
FspBI CTAG 2 cut(s) 617, 788
GluI GCNGC 1 cut(s) 866
Hin1I GRCGYC 1 cut(s) 993
Hin1II CATG 2 cut(s) 904, 950
HindIII AAGCTT 2 cut(s) 23, 682
HinfI GANTC 4 cut(s) 160, 206, 513, 595
HphI GGTGA 2 cut(s) 76, 385
Hpy188I TCNGA 3 cut(s) 151, 578, 717
Hpy188III TCNNGA 6 cut(s) 88, 305, 334, 653, 788, 914
HpyAV CCTTC 6 cut(s) 156, 451, 598, 820, 1007, 1069
HpyCH4III ACNGT 1 cut(s) 582
HpyCH4IV ACGT 2 cut(s) 993, 1060
HpyCH4V TGCA 3 cut(s) 251, 268, 688
HpyF10VI GCNNNNNNNGC 2 cut(s) 280, 323
HpyF3I CTNAG 6 cut(s) 35, 44, 103, 150, 350, 476
HpySE526I ACGT 2 cut(s) 993, 1060
Hsp92I GRCGYC 1 cut(s) 993
Hsp92II CATG 2 cut(s) 904, 950
Kzo9I GATC 4 cut(s) 115, 472, 610, 928
LmnI GCTCC 4 cut(s) 86, 279, 499, 773
Lsp1109I GCAGC 1 cut(s) 852
MabI ACCWGGT 2 cut(s) 570, 642
MaeI CTAG 2 cut(s) 617, 788
MaeII ACGT 2 cut(s) 993, 1060
MaeIII GTNAC 3 cut(s) 391, 540, 757
MalI GATC 4 cut(s) 117, 474, 612, 930
MboI GATC 4 cut(s) 115, 472, 610, 928
MfeI CAATTG 1 cut(s) 269
MflI RGATCY 2 cut(s) 115, 610
MhlI GDGCHC 2 cut(s) 333, 496
MlyI GAGTC 3 cut(s) 215, 507, 604
MseI TTAA 6 cut(s) 120, 240, 320, 851, 860, 896
MslI CAYNNNNRTG 1 cut(s) 915
MspA1I CMGCKG 1 cut(s) 808
MspR9I CCNGG 4 cut(s) 78, 185, 572, 644
MunI CAATTG 1 cut(s) 269
MvaI CCWGG 4 cut(s) 78, 185, 572, 644
MwoI GCNNNNNNNGC 2 cut(s) 280, 323
NdeII GATC 4 cut(s) 115, 472, 610, 928
NlaIII CATG 2 cut(s) 904, 950
NlaIV GGNNCC 4 cut(s) 82, 246, 612, 831
NmuCI GTSAC 1 cut(s) 391
PfeI GAWTC 1 cut(s) 160
PflFI GACNNNGTC 1 cut(s) 174
PflMI CCANNNNNTGG 1 cut(s) 920
PkrI GCNGC 1 cut(s) 867
PleI GAGTC 3 cut(s) 214, 507, 603
PpsI GAGTC 3 cut(s) 214, 507, 603
PpuMI RGGWCCY 2 cut(s) 244, 829
PshBI ATTAAT 1 cut(s) 896
Psp124BI GAGCTC 1 cut(s) 333
Psp5II RGGWCCY 2 cut(s) 244, 829
Psp6I CCWGG 4 cut(s) 76, 183, 570, 642
PspEI GGTNACC 1 cut(s) 391
PspGI CCWGG 4 cut(s) 76, 183, 570, 642
PspN4I GGNNCC 4 cut(s) 82, 246, 612, 831
PspPI GGNCC 2 cut(s) 244, 829
PspPPI RGGWCCY 2 cut(s) 244, 829
PstI CTGCAG 1 cut(s) 253
PsuI RGATCY 2 cut(s) 115, 610
PsyI GACNNNGTC 1 cut(s) 174
RsaI GTAC 3 cut(s) 621, 648, 1036
RsaNI GTAC 3 cut(s) 620, 647, 1035
RseI CAYNNNNRTG 1 cut(s) 915
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 6 cut(s) 120, 240, 320, 851, 860, 896
SatI GCNGC 1 cut(s) 866
Sau3AI GATC 4 cut(s) 115, 472, 610, 928
Sau96I GGNCC 2 cut(s) 244, 829
SbfI CCTGCAGG 1 cut(s) 253
SchI GAGTC 3 cut(s) 215, 507, 604
ScrFI CCNGG 4 cut(s) 78, 185, 572, 644
SdaI CCTGCAGG 1 cut(s) 253
SduI GDGCHC 2 cut(s) 333, 496
SexAI ACCWGGT 2 cut(s) 570, 642
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 2 cut(s) 244, 829
SmiMI CAYNNNNRTG 1 cut(s) 915
SmlI CTYRAG 2 cut(s) 49, 164
SmoI CTYRAG 2 cut(s) 49, 164
Sse8387I CCTGCAGG 1 cut(s) 253
SsiI CCGC 1 cut(s) 808
SspMI CTAG 2 cut(s) 617, 788
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 4 cut(s) 76, 183, 570, 642
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 582
TaiI ACGT 2 cut(s) 996, 1063
TaqI TCGA 1 cut(s) 879
TatI WGTACW 1 cut(s) 619
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 6 cut(s) 120, 240, 320, 851, 860, 896
Tru9I TTAA 6 cut(s) 120, 240, 320, 851, 860, 896
TscAI CASTG 1 cut(s) 554
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 1 cut(s) 865
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 4 cut(s) 356, 906, 990, 1026
TspRI CASTG 1 cut(s) 554
Tth111I GACNNNGTC 1 cut(s) 174
Van91I CCANNNNNTGG 1 cut(s) 920
VpaK11BI GGWCC 2 cut(s) 244, 829
VspI ATTAAT 1 cut(s) 896
XapI RAATTY 2 cut(s) 72, 872
XbaI TCTAGA 1 cut(s) 787
XspI CTAG 2 cut(s) 617, 788
ZraI GACGTC 1 cut(s) 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.