Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Forward (+)

41113909 .. 41114738

Gene Structure 830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002883

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGCTCCAATTTGGAAGGTGCACATTTGGAGAAGTTTCCAAGAGAAGTAGTCAAGCTTCTTCTTCTCAAGTATCTTAGCTTGAGGGGTAGCAAGATGAAACAAATTCCAAGCTCCATCAAGAAGCTACAATACCTAGAGACCTTGGATCTTAAACACTCCCATGTAATGGAATTACTTGCGGAGATTTTCAATCTCAAGCGACTTCGCCATCTCTTGGTGTACCGATATGAGGTAGAGTCATATGCACGTTTAACTGTCAAAAATGGAGTTAAGGTTCCTGCAGGAATATGTGGCTTGCAATCGCTCCAAAAGCTCTGCTTTATAGAGGCAAATCAAGGCAATGGTGCTTTAATGGCAGAGCTTGGGAGAATGGGGACCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

129

Amino Acids

14.48

Weight (kDa)

9.66

Isoelectric Point (pI)

30.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	15 - 125	8.5e-18	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	169, 217
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	105
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	3 cut(s)	169, 217, 232
AgsI	TTSAA	1 cut(s)	193
AloI	GAACNNNNNNTCC	2 cut(s)	261, 293
AluBI	AGCT	6 cut(s)	58, 81, 114, 127, 316, 364
AluI	AGCT	6 cut(s)	58, 81, 114, 127, 316, 364
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	134
Alw44I	GTGCAC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	156
ApaLI	GTGCAC	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	378
AvaII	GGWCC	1 cut(s)	378
BaeGI	GKGCMC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	4 cut(s)	42, 74, 116, 148
Bbv12I	GWGCWC	1 cut(s)	25
BccI	CCATC	2 cut(s)	125, 219
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	378
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	3 cut(s)	7, 279, 379
BpuEI	CTTGAG	3 cut(s)	53, 103, 182
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 217, 232
Bse3DI	GCAATG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	144
BseLI	CCNNNNNNNGG	3 cut(s)	169, 217, 232
BseMI	GCAATG	1 cut(s)	349
BseSI	GKGCMC	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	25
BslI	CCNNNNNNNGG	3 cut(s)	169, 217, 232
BsmAI	GTCTC	1 cut(s)	134
Bso31I	GGTCTC	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	8, 25
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	1 cut(s)	182
BspLI	GGNNCC	3 cut(s)	7, 279, 379
BspMAI	CTGCAG	1 cut(s)	286
BspPI	GGATC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	77
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 356
BstSFI	CTRYAG	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	8 cut(s)	6, 58, 81, 114, 127, 297, 316, 364
CviKI_1	RGCY	8 cut(s)	6, 58, 81, 114, 127, 297, 316, 364
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	1 cut(s)	167
FaiI	YATR	6 cut(s)	165, 231, 244, 246, 292, 326
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FatI	CATG	1 cut(s)	163
FauNDI	CATATG	1 cut(s)	244
FriOI	GRGCYC	1 cut(s)	8
FspBI	CTAG	1 cut(s)	137
Hin1II	CATG	1 cut(s)	167
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	23, 223
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	2 cut(s)	23, 223
HpyAV	CCTTC	1 cut(s)	11
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	4 cut(s)	23, 248, 284, 301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 356
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	1 cut(s)	167
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	3 cut(s)	11, 119, 312
LpnPI	CCDG	2 cut(s)	270, 294
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	250
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	53, 56
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	2 cut(s)	8, 25
MluCI	AATT	3 cut(s)	10, 105, 173
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	3 cut(s)	78, 226, 322
MseI	TTAA	4 cut(s)	153, 254, 273, 353
MslI	CAYNNNNRTG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	313, 356
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	3 cut(s)	7, 279, 379
PflMI	CCANNNNNTGG	2 cut(s)	169, 217
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PspN4I	GGNNCC	3 cut(s)	7, 279, 379
PspPI	GGNCC	1 cut(s)	378
PstI	CTGCAG	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	4 cut(s)	153, 254, 273, 353
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	378
SbfI	CCTGCAGG	1 cut(s)	286
SchI	GAGTC	1 cut(s)	248
SdaI	CCTGCAGG	1 cut(s)	286
SduI	GDGCHC	2 cut(s)	8, 25
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	1 cut(s)	378
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	3 cut(s)	68, 82, 197
SmoI	CTYRAG	3 cut(s)	68, 82, 197
Sse8387I	CCTGCAGG	1 cut(s)	286
Sse9I	AATT	3 cut(s)	10, 105, 173
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	253
TasI	AATT	3 cut(s)	10, 105, 173
Tru1I	TTAA	4 cut(s)	153, 254, 273, 353
Tru9I	TTAA	4 cut(s)	153, 254, 273, 353
TspDTI	ATGAA	1 cut(s)	113
Van91I	CCANNNNNTGG	2 cut(s)	169, 217
VneI	GTGCAC	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	378
XapI	RAATTY	1 cut(s)	105
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.