Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Reverse (-)

23920643 .. 23920915

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG261900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAAACCGAAAGCTTGCCATCAAATTGCAGCTGATATTCAACTCCTACAGTTGAAAGTCCAAACGCTCTCAAAGGGACATAACAGATACCAACTTTATGATCAAGGTCTGCAATGTCAGTTTGGTCAAGTTTATGTCCTTTCACCAGAAGAGGCTGAGCCTGTGGGAATTGGAGAACGCAAAGAGAAGCTGATTGAGATGCTTATGTTGAATGTTTTCCGACAGCAGGTGGTTCCAGTAGTTGGAATGGGAGGATTAGGAAAACTACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

90

Amino Acids

10.08

Weight (kDa)

8.64

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	217
Acc36I	ACCTGC	1 cut(s)	217
AccB7I	CCANNNNNTGG	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	226, 242
AgsI	TTSAA	3 cut(s)	41, 55, 211
AluBI	AGCT	3 cut(s)	14, 32, 190
AluI	AGCT	3 cut(s)	14, 32, 190
ApeKI	GCWGC	1 cut(s)	29
Asp700I	GAANNNNTTC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	27
BclI	TGATCA	1 cut(s)	100
BfmI	CTRYAG	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	217
BisI	GCNGC	1 cut(s)	30
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	234
BmsI	GCATC	1 cut(s)	189
Bpu1102I	GCTNAGC	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 242
Bse1I	ACTGG	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	119
BseLI	CCNNNNNNNGG	2 cut(s)	226, 242
BseMI	GCAATG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	226, 242
BsmFI	GGGAC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	100
Bsp1720I	GCTNAGC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	217
BsrDI	GCAATG	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	236
BssMI	GATC	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	156
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	41
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	16
CviJI	RGCY	5 cut(s)	14, 32, 155, 160, 190
CviKI_1	RGCY	5 cut(s)	14, 32, 155, 160, 190
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
FaiI	YATR	4 cut(s)	81, 99, 135, 206
FaqI	GGGAC	1 cut(s)	90
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	30
HindIII	AAGCTT	1 cut(s)	12
HphI	GGTGA	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	221
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4V	TGCA	2 cut(s)	29, 112
HpyF3I	CTNAG	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	4 cut(s)	159, 174, 212, 249
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	1 cut(s)	189
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	161
MluCI	AATT	2 cut(s)	24, 168
MmeI	TCCRAC	2 cut(s)	223, 244
MnlI	CCTC	2 cut(s)	145, 245
MroXI	GAANNNNTTC	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	32
NdeII	GATC	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	234
PaqCI	CACCTGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	215
PflMI	CCANNNNNTGG	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	234
PvuII	CAGCTG	1 cut(s)	32
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	100
SetI	ASST	6 cut(s)	16, 34, 109, 192, 231, 271
SfaNI	GCATC	1 cut(s)	189
SfcI	CTRYAG	1 cut(s)	47
SgeI	CNNG	7 cut(s)	27, 116, 140, 158, 173, 239, 248
Sse9I	AATT	2 cut(s)	24, 168
TaaI	ACNGT	1 cut(s)	51
TasI	AATT	2 cut(s)	24, 168
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.