FvH4_7g11781

Male sterility protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
10802334 .. 10804732
2399 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11781.t1

Sequence Viewer

Length: 987 bp
ATGGAAGATGTCAGAGGCACAGTTTGTGTAACTGGTGGAACAGGATATGTAGCCTCATGGCTGATTCTGAGACTGCTTCAGCATGGTTATTCTGTGCGAGCCACCGTTAGATCCAGCCCTGCTGAAGGCAAGAGAGATATAAGCTACCTGACAAGCCTACCAGGAGCACAAGAGAAACTCCAAATCTTTCATGCAGATCTCAACAACCCTGAGACCTTCAATGAAGCCATCCAAGGCTGCACCGGTGTCTTCCACCTTGCTCACCCCATGGACGTTGAAGGAAAAGAACCCGAGGAAGTCGTAACCAAACGAGCCCTGGAAGGAACGCTGGGAATTTTGAAGGCATGCCTAGATTCCAAGACTGTGAAGCGAGTGGTTTACACTTCTAGTTTGGCCACGATATTGTTCAATAGCAAGAGCCTTGAAGAAACTGATGAGAACACATGGAGTGAGGTTGATGCTTGTCGAAGTAACAAGCTTGTGAGCTCTTCTTACTTGGTTTCCAAGACTGTGGTGGAGAGGACAGCCCTGGAGTTTGCAGAGAGGAATGGTTTGGATCTTGTCACTGTGGTTTTGCCTATAGTACTTGGACCTTTCGTTTGTCCAAATGTTCCTGCTTCGGTGTACATGGGACTGGCTCCCATTTTTGGTGACCAAGAGCAATGCGAATATCTTGTTAGCACAAATATGGTGCACATAGATGATGCAGCGAGTGCCCATATCTTCCTTCTTGAACATGCTAATGCAAAAGGGAGGTACATTTGCTCGTCGATCCAAACAACGATTCGTGAGCTATATGACTTTCTTTCCGCAAGATACCCAGAACTTCATATATCAATACCAGATCACTTAATGGAGATTAAAGGTTACAAAGGAACTACTGTATCATCAATGAAACTGTGGAATGCTGGCTTCAAGTTCAAATGCGGCATTGGGGAGATGTTTGATGGCGCTGTTCAATCTTGCAAAGAGAAGGGTTTTCTATAG

Protein Analysis

329

Amino Acids

36.1

Weight (kDa)

5.64

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 7 - 129 2.3e-09 NmrA-like family
Epimerase PF01370 8 - 250 7e-23 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 10 - 192 3.2e-17 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 10 - 267 1.7e-13 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 10 - 197 3.8e-11 Male sterility protein
NAD_binding_10 PF13460 12 - 133 4.4e-08 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 810, 927
AclWI GGATC 3 cut(s) 105, 564, 766
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 2 cut(s) 62, 144
AfaI GTAC 3 cut(s) 585, 626, 758
AfiI CCNNNNNNNGG 2 cut(s) 125, 647
AgeI ACCGGT 1 cut(s) 242
AgsI TTSAA 9 cut(s) 220, 278, 340, 409, 425, 734, 916, 922, 959
AjnI CCWGG 3 cut(s) 160, 315, 528
AjuI GAANNNNNNNTTGG 2 cut(s) 768, 800
AluBI AGCT 4 cut(s) 144, 478, 486, 793
AluI AGCT 4 cut(s) 144, 478, 486, 793
Alw21I GWGCWC 3 cut(s) 169, 488, 696
Alw26I GTCTC 2 cut(s) 64, 206
Alw44I GTGCAC 1 cut(s) 692
AlwI GGATC 3 cut(s) 105, 564, 766
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 1 cut(s) 393
ApaLI GTGCAC 1 cut(s) 692
ApeKI GCWGC 2 cut(s) 237, 707
ApoI RAATTY 1 cut(s) 333
ArsI GACNNNNNNTTYG 2 cut(s) 582, 614
AsiGI ACCGGT 1 cut(s) 242
AspLEI GCGC 1 cut(s) 953
AspS9I GGNCC 1 cut(s) 590
AsuHPI GGTGA 2 cut(s) 254, 662
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 1 cut(s) 590
BaeGI GKGCMC 2 cut(s) 696, 718
BaeI ACNNNNGTAYC 2 cut(s) 867, 900
BalI TGGCCA 1 cut(s) 395
BanII GRGCYC 2 cut(s) 316, 488
BbsI GAAGAC 1 cut(s) 241
Bbv12I GWGCWC 3 cut(s) 169, 488, 696
BbvI GCAGC 2 cut(s) 224, 719
BccI CCATC 2 cut(s) 236, 941
BciT130I CCWGG 3 cut(s) 162, 317, 530
BcoDI GTCTC 2 cut(s) 64, 206
BfaI CTAG 2 cut(s) 350, 387
BfmI CTRYAG 2 cut(s) 579, 983
BfoI RGCGCY 1 cut(s) 954
BglII AGATCT 1 cut(s) 196
BisI GCNGC 3 cut(s) 238, 708, 928
BlsI GCNGC 3 cut(s) 239, 709, 929
BmcAI AGTACT 1 cut(s) 585
Bme1390I CCNGG 3 cut(s) 162, 317, 530
Bme18I GGWCC 1 cut(s) 590
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 1 cut(s) 639
BmrFI CCNGG 3 cut(s) 162, 317, 530
BmsI GCATC 2 cut(s) 448, 694
BpiI GAAGAC 1 cut(s) 241
BpmI CTGGAG 1 cut(s) 551
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 5 cut(s) 232, 267, 291, 315, 528
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 647
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 37, 639
Bse3DI GCAATG 1 cut(s) 668
BseBI CCWGG 3 cut(s) 162, 317, 530
BseDI CCNNGG 5 cut(s) 232, 267, 291, 315, 528
BseGI GGATG 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 125, 647
BseMI GCAATG 1 cut(s) 668
BseMII CTCAG 2 cut(s) 59, 201
BseNI ACTGG 2 cut(s) 37, 639
BseSI GKGCMC 2 cut(s) 696, 718
BseXI GCAGC 2 cut(s) 224, 719
BseYI CCCAGC 1 cut(s) 328
BsgI GTGCAG 1 cut(s) 223
BshFI GGCC 1 cut(s) 395
BshTI ACCGGT 1 cut(s) 242
BsiHKAI GWGCWC 3 cut(s) 169, 488, 696
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 243
BslFI GGGAC 1 cut(s) 645
BslI CCNNNNNNNGG 2 cut(s) 125, 647
BsmAI GTCTC 2 cut(s) 64, 206
BsmFI GGGAC 1 cut(s) 645
BsmI GAATGC 1 cut(s) 910
BsnI GGCC 1 cut(s) 395
Bso31I GGTCTC 1 cut(s) 206
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 5 cut(s) 169, 316, 488, 696, 718
Bsp1407I TGTACA 1 cut(s) 624
Bsp143I GATC 5 cut(s) 110, 196, 556, 771, 844
Bsp19I CCATGG 1 cut(s) 267
BspACI CCGC 2 cut(s) 810, 927
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 2 cut(s) 60, 202
BspLI GGNNCC 1 cut(s) 639
BspPI GGATC 3 cut(s) 105, 564, 766
BspQI GCTCTTC 1 cut(s) 493
BspTNI GGTCTC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 668
BsrFI RCCGGY 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 624
BsrI ACTGG 2 cut(s) 37, 639
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 5 cut(s) 232, 267, 291, 315, 528
BssMI GATC 5 cut(s) 110, 196, 556, 771, 844
BssT1I CCWWGG 2 cut(s) 232, 267
Bst2UI CCWGG 3 cut(s) 162, 317, 530
Bst4CI ACNGT 7 cut(s) 22, 106, 364, 511, 568, 883, 900
Bst6I CTCTTC 1 cut(s) 493
BstAPI GCANNNNNTGC 1 cut(s) 713
BstAUI TGTACA 1 cut(s) 624
BstC8I GCNNGC 3 cut(s) 99, 346, 910
BstDEI CTNAG 2 cut(s) 68, 210
BstDSI CCRYGG 1 cut(s) 267
BstEII GGTNACC 1 cut(s) 650
BstENI CCTNNNNNAGG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 228
BstH2I RGCGCY 1 cut(s) 954
BstHHI GCGC 1 cut(s) 953
BstKTI GATC 5 cut(s) 113, 199, 559, 774, 847
BstMAI GTCTC 2 cut(s) 64, 206
BstMBI GATC 5 cut(s) 110, 196, 556, 771, 844
BstMWI GCNNNNNNNGC 1 cut(s) 713
BstNI CCWGG 3 cut(s) 162, 317, 530
BstNSI RCATGY 2 cut(s) 348, 740
BstPI GGTNACC 1 cut(s) 650
BstSCI CCNGG 3 cut(s) 160, 315, 528
BstSFI CTRYAG 2 cut(s) 579, 983
BstSLI GKGCMC 2 cut(s) 696, 718
BstV1I GCAGC 2 cut(s) 224, 719
BstV2I GAAGAC 1 cut(s) 241
BstX2I RGATCY 3 cut(s) 110, 196, 556
BstXI CCANNNNNNTGG 1 cut(s) 511
BstYI RGATCY 3 cut(s) 110, 196, 556
BsuRI GGCC 1 cut(s) 395
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 564
Cac8I GCNNGC 3 cut(s) 99, 346, 910
CfoI GCGC 1 cut(s) 953
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 590
Csp6I GTAC 3 cut(s) 584, 625, 757
CspAI ACCGGT 1 cut(s) 242
CviAII CATG 8 cut(s) 57, 83, 191, 268, 345, 444, 628, 737
CviQI GTAC 3 cut(s) 584, 625, 757
DdeI CTNAG 2 cut(s) 68, 210
DpnI GATC 5 cut(s) 112, 198, 558, 773, 846
DpnII GATC 5 cut(s) 110, 196, 556, 771, 844
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 493
EarI CTCTTC 1 cut(s) 493
Ecl136II GAGCTC 1 cut(s) 486
Eco130I CCWWGG 2 cut(s) 232, 267
Eco24I GRGCYC 2 cut(s) 316, 488
Eco31I GGTCTC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 590
Eco53kI GAGCTC 1 cut(s) 486
Eco57I CTGAAG 2 cut(s) 62, 144
Eco88I CYCGRG 1 cut(s) 290
Eco91I GGTNACC 1 cut(s) 650
EcoICRI GAGCTC 1 cut(s) 486
EcoNI CCTNNNNNAGG 1 cut(s) 123
EcoO65I GGTNACC 1 cut(s) 650
EcoRII CCWGG 3 cut(s) 160, 315, 528
EcoT14I CCWWGG 2 cut(s) 232, 267
EcoT38I GRGCYC 2 cut(s) 316, 488
ErhI CCWWGG 2 cut(s) 232, 267
FaeI CATG 8 cut(s) 60, 86, 194, 271, 348, 447, 631, 740
FaqI GGGAC 1 cut(s) 645
FatI CATG 8 cut(s) 56, 82, 190, 267, 344, 443, 627, 736
Fnu4HI GCNGC 3 cut(s) 238, 708, 928
FokI GGATG 1 cut(s) 215
FriOI GRGCYC 2 cut(s) 316, 488
Fsp4HI GCNGC 3 cut(s) 238, 708, 928
FspBI CTAG 2 cut(s) 350, 387
GlaI GCGC 1 cut(s) 952
GluI GCNGC 3 cut(s) 238, 708, 928
GsaI CCCAGC 1 cut(s) 332
GsuI CTGGAG 1 cut(s) 551
HaeII RGCGCY 1 cut(s) 954
HaeIII GGCC 1 cut(s) 395
HapII CCGG 1 cut(s) 243
HhaI GCGC 1 cut(s) 953
Hin1II CATG 8 cut(s) 60, 86, 194, 271, 348, 447, 631, 740
Hin6I GCGC 1 cut(s) 951
HinP1I GCGC 1 cut(s) 951
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 3 cut(s) 64, 353, 784
HpaII CCGG 1 cut(s) 243
HphI GGTGA 2 cut(s) 254, 662
Hpy166II GTNNAC 3 cut(s) 379, 625, 694
Hpy188I TCNGA 2 cut(s) 14, 69
Hpy188III TCNNGA 2 cut(s) 731, 788
Hpy8I GTNNAC 3 cut(s) 379, 625, 694
Hpy99I CGWCG 1 cut(s) 772
HpyAV CCTTC 7 cut(s) 119, 226, 272, 314, 334, 737, 967
HpyCH4III ACNGT 7 cut(s) 22, 106, 364, 511, 568, 883, 900
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 7 cut(s) 194, 240, 539, 694, 707, 746, 966
HpyF10VI GCNNNNNNNGC 1 cut(s) 713
HpyF3I CTNAG 2 cut(s) 68, 210
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 8 cut(s) 60, 86, 194, 271, 348, 447, 631, 740
HspAI GCGC 1 cut(s) 951
Kzo9I GATC 5 cut(s) 110, 196, 556, 771, 844
LguI GCTCTTC 1 cut(s) 493
LmnI GCTCC 2 cut(s) 164, 643
Lsp1109I GCAGC 2 cut(s) 224, 719
LweI GCATC 2 cut(s) 448, 694
MaeI CTAG 2 cut(s) 350, 387
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 6 cut(s) 28, 301, 470, 562, 650, 866
MalI GATC 5 cut(s) 112, 198, 558, 773, 846
MboI GATC 5 cut(s) 110, 196, 556, 771, 844
MboII GAAGA 5 cut(s) 17, 241, 437, 480, 715
MflI RGATCY 3 cut(s) 110, 196, 556
MhlI GDGCHC 5 cut(s) 169, 316, 488, 696, 718
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 1 cut(s) 333
MluNI TGGCCA 1 cut(s) 395
MnlI CCTC 7 cut(s) 8, 64, 286, 445, 513, 537, 747
Mox20I TGGCCA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 395
MseI TTAA 2 cut(s) 851, 861
MslI CAYNNNNRTG 3 cut(s) 686, 699, 741
Msp20I TGGCCA 1 cut(s) 395
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 3 cut(s) 162, 317, 530
Mva1269I GAATGC 1 cut(s) 910
MvaI CCWGG 3 cut(s) 162, 317, 530
MwoI GCNNNNNNNGC 1 cut(s) 713
NcoI CCATGG 1 cut(s) 267
NdeII GATC 5 cut(s) 110, 196, 556, 771, 844
NlaIII CATG 8 cut(s) 60, 86, 194, 271, 348, 447, 631, 740
NlaIV GGNNCC 1 cut(s) 639
NmuCI GTSAC 2 cut(s) 562, 650
NspI RCATGY 2 cut(s) 348, 740
PaeI GCATGC 1 cut(s) 348
PciSI GCTCTTC 1 cut(s) 493
PctI GAATGC 1 cut(s) 910
PfeI GAWTC 3 cut(s) 64, 353, 784
PinAI ACCGGT 1 cut(s) 242
PkrI GCNGC 3 cut(s) 239, 709, 929
Psp124BI GAGCTC 1 cut(s) 488
Psp6I CCWGG 3 cut(s) 160, 315, 528
PspEI GGTNACC 1 cut(s) 650
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 3 cut(s) 160, 315, 528
PspN4I GGNNCC 1 cut(s) 639
PspPI GGNCC 1 cut(s) 590
PsuI RGATCY 3 cut(s) 110, 196, 556
RsaI GTAC 3 cut(s) 585, 626, 758
RsaNI GTAC 3 cut(s) 584, 625, 757
RseI CAYNNNNRTG 3 cut(s) 686, 699, 741
SacI GAGCTC 1 cut(s) 488
SapI GCTCTTC 1 cut(s) 493
SaqAI TTAA 2 cut(s) 851, 861
SatI GCNGC 3 cut(s) 238, 708, 928
Sau3AI GATC 5 cut(s) 110, 196, 556, 771, 844
Sau96I GGNCC 1 cut(s) 590
ScaI AGTACT 1 cut(s) 585
ScrFI CCNGG 3 cut(s) 162, 317, 530
SduI GDGCHC 5 cut(s) 169, 316, 488, 696, 718
SfaNI GCATC 2 cut(s) 448, 694
SfcI CTRYAG 2 cut(s) 579, 983
SgrAI CRCCGGYG 1 cut(s) 242
SinI GGWCC 1 cut(s) 590
SmiMI CAYNNNNRTG 3 cut(s) 686, 699, 741
SphI GCATGC 1 cut(s) 348
Sse9I AATT 1 cut(s) 333
SsiI CCGC 2 cut(s) 810, 927
SspMI CTAG 2 cut(s) 350, 387
SstI GAGCTC 1 cut(s) 488
StyD4I CCNGG 3 cut(s) 160, 315, 528
StyI CCWWGG 2 cut(s) 232, 267
TaaI ACNGT 7 cut(s) 22, 106, 364, 511, 568, 883, 900
TaiI ACGT 1 cut(s) 276
TaqI TCGA 2 cut(s) 466, 770
TasI AATT 1 cut(s) 333
TatI WGTACW 2 cut(s) 583, 624
TauI GCSGC 1 cut(s) 930
TfiI GAWTC 3 cut(s) 64, 353, 784
Tru1I TTAA 2 cut(s) 851, 861
Tru9I TTAA 2 cut(s) 851, 861
TscAI CASTG 1 cut(s) 571
TseFI GTSAC 2 cut(s) 562, 650
TseI GCWGC 2 cut(s) 237, 707
Tsp45I GTSAC 2 cut(s) 562, 650
TspDTI ATGAA 4 cut(s) 179, 237, 818, 908
TspRI CASTG 1 cut(s) 571
VneI GTGCAC 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 590
XagI CCTNNNNNAGG 1 cut(s) 123
XapI RAATTY 1 cut(s) 333
XceI RCATGY 2 cut(s) 348, 740
XcmI CCANNNNNNNNNTGG 2 cut(s) 313, 511
XspI CTAG 2 cut(s) 350, 387
ZrmI AGTACT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.