FvH4_7g11790

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000382
Physical Location & Seq
Forward (+)
10804776 .. 10807353
2578 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11790.t1

Sequence Viewer

Length: 996 bp
ATGGAAGGGGAGAAAGGTAGAGTGTGTGTAACAGGAGGTTCTGGGTTCATTGGTTCCTGGTTGATTTTCAGGCTTCTTGAGCATGGCTACTCTGTCAATACCACTGTTAGATCAGACCCAGCAGAAGACAAGAAAGATGTAAGCTTCCTCACAGCTCTACCAGGAGCAGAAGAAAAGCTCCGAATTTTCAATGCAGACCTAAGCAATCCGGAAAGTTTTGATGCAGCCATCCAAGGATGCATCGGAGTGTTCCATGTTGCTACTCCGGTTGACTTTGAAGGCAAGGAACCTGAACCGGTAGTGACCAAACGATCAGTTGATGGAGCTCTTGGAATCCTCAAGGCTTGCCTAAATGCAAAAACAGTTAAGCGAGTTGTGTACACTTCTAGTGCATCTGCTGTTGCATTTAACAAGGAGGATGTACAAGACATGGATGAGAGTTTTTGGAGTGACACAGATTACATTAAAGCTTTAAAGCTGCCTGGAGTCTCATTCAACTCATACATGATTTCAAAGATATTAACCGAAAGAGCAGTTCTTGAATATTCGGAGAAATATGGATTGGATGTTGTGACAGTAATTCCTTCTTTTGTTGTTGGCCCTTTCATTTGTCCCAAGTTCCCCAGCTCTGTGAAAACCACATTGGCTCTGGTTTTAGGTAACAGAGATGAATATCCTACTCTTATCAAATTTCCATTGGTTCATGTGGATGATGTTGCCAGAGCGCACATTTTCCTTTTTGAACATCAAGATGCAAAAGGGAGGTACAATTGCTCATTAAATGTCATGACAATTGAAGAAATGGCCGAGCTCCTTTATGCCAAGTTCCCTGAATTTCAAATACCCTCAGCAGAGTCATTAAAGGAAGTTAAAGGTCCTAAATTTCCAGGTCTATCATCAAAGAAGCTCTTGGATTCGGGTTTCGAATTTAAGTATGGGGTTGATGAGATGTTCACTGATGCAATTCAGTGCTGCAAGGAGAAGGGTTATCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00943 ko01110 map00943 map01110
Pfam Domains
Protein Families
Epimerase

Protein Analysis

332

Amino Acids

36.61

Weight (kDa)

5.25

Isoelectric Point (pI)

32.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 5 - 135 7.1e-08 NmrA-like family
Epimerase PF01370 8 - 258 4.5e-29 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 10 - 201 6.4e-17 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 10 - 274 1.6e-16 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 10 - 204 1.4e-14 Male sterility protein
NAD_binding_10 PF13460 12 - 147 1.4e-07 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 208
AcoI YGGCCR 1 cut(s) 804
AcsI RAATTY 5 cut(s) 183, 689, 833, 881, 926
AfaI GTAC 3 cut(s) 380, 423, 767
AgeI ACCGGT 1 cut(s) 295
AgsI TTSAA 8 cut(s) 190, 278, 496, 513, 542, 743, 797, 839
AjnI CCWGG 4 cut(s) 56, 160, 481, 886
AjuI GAANNNNNNNTTGG 4 cut(s) 545, 577, 626, 658
AluBI AGCT 9 cut(s) 144, 155, 178, 326, 470, 478, 627, 811, 907
AluI AGCT 9 cut(s) 144, 155, 178, 326, 470, 478, 627, 811, 907
Alw21I GWGCWC 2 cut(s) 328, 813
Alw26I GTCTC 1 cut(s) 493
Aor13HI TCCGGA 1 cut(s) 208
AoxI GGCC 2 cut(s) 598, 804
ApeKI GCWGC 3 cut(s) 224, 478, 972
ApoI RAATTY 5 cut(s) 183, 689, 833, 881, 926
AsiGI ACCGGT 1 cut(s) 295
AspLEI GCGC 1 cut(s) 727
AspS9I GGNCC 2 cut(s) 599, 875
AsuII TTCGAA 1 cut(s) 924
AvaII GGWCC 1 cut(s) 875
BanII GRGCYC 2 cut(s) 328, 813
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 2 cut(s) 328, 813
BbvCI CCTCAGC 1 cut(s) 847
BbvI GCAGC 3 cut(s) 236, 465, 959
BccI CCATC 2 cut(s) 236, 314
BciT130I CCWGG 4 cut(s) 58, 162, 483, 888
BcoDI GTCTC 1 cut(s) 493
BfaI CTAG 1 cut(s) 387
BisI GCNGC 3 cut(s) 225, 479, 973
BlsI GCNGC 3 cut(s) 226, 480, 974
Bme1390I CCNGG 4 cut(s) 58, 162, 483, 888
Bme18I GGWCC 1 cut(s) 875
BmgT120I GGNCC 2 cut(s) 599, 875
BmiI GGNNCC 2 cut(s) 55, 288
BmrFI CCNGG 4 cut(s) 58, 162, 483, 888
BmsI GCATC 6 cut(s) 211, 227, 249, 401, 742, 949
BpiI GAAGAC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 504
Bpu10I CCTNAGC 2 cut(s) 200, 847
Bpu14I TTCGAA 1 cut(s) 924
BpuEI CTTGAG 2 cut(s) 98, 323
BsaBI GATNNNNATC 1 cut(s) 672
BsaJI CCNNGG 1 cut(s) 232
BsaWI WCCGGW 3 cut(s) 208, 265, 295
Bse118I RCCGGY 1 cut(s) 295
Bse8I GATNNNNATC 1 cut(s) 672
BseAI TCCGGA 1 cut(s) 208
BseBI CCWGG 4 cut(s) 58, 162, 483, 888
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 6 cut(s) 228, 242, 424, 439, 571, 715
BseJI GATNNNNATC 1 cut(s) 672
BseMII CTCAG 1 cut(s) 861
BseXI GCAGC 3 cut(s) 236, 465, 959
BseYI CCCAGC 2 cut(s) 118, 623
BshFI GGCC 2 cut(s) 600, 806
BshTI ACCGGT 1 cut(s) 295
BsiHKAI GWGCWC 2 cut(s) 328, 813
BsiSI CCGG 3 cut(s) 209, 266, 296
BslFI GGGAC 1 cut(s) 597
BsmAI GTCTC 1 cut(s) 493
BsmFI GGGAC 1 cut(s) 597
BsnI GGCC 2 cut(s) 600, 806
Bsp119I TTCGAA 1 cut(s) 924
Bsp1286I GDGCHC 2 cut(s) 328, 813
Bsp13I TCCGGA 1 cut(s) 208
Bsp1407I TGTACA 2 cut(s) 378, 421
Bsp143I GATC 2 cut(s) 110, 311
BspANI GGCC 2 cut(s) 600, 806
BspCNI CTCAG 1 cut(s) 860
BspEI TCCGGA 1 cut(s) 208
BspHI TCATGA 1 cut(s) 786
BspLI GGNNCC 2 cut(s) 55, 288
BspT104I TTCGAA 1 cut(s) 924
BsrFI RCCGGY 1 cut(s) 295
BsrGI TGTACA 2 cut(s) 378, 421
BssAI RCCGGY 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 2 cut(s) 110, 311
BssT1I CCWWGG 1 cut(s) 232
Bst2UI CCWGG 4 cut(s) 58, 162, 483, 888
Bst4CI ACNGT 3 cut(s) 106, 364, 577
BstAUI TGTACA 2 cut(s) 378, 421
BstBI TTCGAA 1 cut(s) 924
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 200, 847
BstF5I GGATG 6 cut(s) 228, 242, 424, 439, 571, 715
BstHHI GCGC 1 cut(s) 727
BstKTI GATC 2 cut(s) 113, 314
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 2 cut(s) 110, 311
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 4 cut(s) 58, 162, 483, 888
BstSCI CCNGG 4 cut(s) 56, 160, 481, 886
BstV1I GCAGC 3 cut(s) 236, 465, 959
BstV2I GAAGAC 1 cut(s) 132
BsuRI GGCC 2 cut(s) 600, 806
BtsCI GGATG 6 cut(s) 228, 242, 424, 439, 571, 715
BtsIMutI CAGTG 3 cut(s) 102, 954, 974
Cac8I GCNNGC 1 cut(s) 346
CciI TCATGA 1 cut(s) 786
CfoI GCGC 1 cut(s) 727
Cfr10I RCCGGY 1 cut(s) 295
Cfr13I GGNCC 2 cut(s) 599, 875
Csp6I GTAC 3 cut(s) 379, 422, 766
CspAI ACCGGT 1 cut(s) 295
CviAII CATG 6 cut(s) 83, 254, 430, 505, 704, 787
CviQI GTAC 3 cut(s) 379, 422, 766
DdeI CTNAG 2 cut(s) 200, 847
DpnI GATC 2 cut(s) 112, 313
DpnII GATC 2 cut(s) 110, 311
DraI TTTAAA 1 cut(s) 474
EaeI YGGCCR 1 cut(s) 804
Ecl136II GAGCTC 2 cut(s) 326, 811
Eco130I CCWWGG 1 cut(s) 232
Eco24I GRGCYC 2 cut(s) 328, 813
Eco47I GGWCC 1 cut(s) 875
Eco53kI GAGCTC 2 cut(s) 326, 811
EcoICRI GAGCTC 2 cut(s) 326, 811
EcoO109I RGGNCCY 1 cut(s) 875
EcoRII CCWGG 4 cut(s) 56, 160, 481, 886
EcoT14I CCWWGG 1 cut(s) 232
EcoT22I ATGCAT 1 cut(s) 242
EcoT38I GRGCYC 2 cut(s) 328, 813
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 6 cut(s) 86, 257, 433, 508, 707, 790
FalI AAGNNNNNCTT 2 cut(s) 893, 925
FaqI GGGAC 1 cut(s) 597
FatI CATG 6 cut(s) 82, 253, 429, 504, 703, 786
Fnu4HI GCNGC 3 cut(s) 225, 479, 973
FokI GGATG 6 cut(s) 215, 249, 431, 446, 578, 722
FriOI GRGCYC 2 cut(s) 328, 813
Fsp4HI GCNGC 3 cut(s) 225, 479, 973
FspBI CTAG 1 cut(s) 387
GlaI GCGC 1 cut(s) 726
GluI GCNGC 3 cut(s) 225, 479, 973
GsaI CCCAGC 2 cut(s) 122, 627
GsuI CTGGAG 1 cut(s) 504
HaeIII GGCC 2 cut(s) 600, 806
HapII CCGG 3 cut(s) 209, 266, 296
HhaI GCGC 1 cut(s) 727
Hin1II CATG 6 cut(s) 86, 257, 433, 508, 707, 790
Hin6I GCGC 1 cut(s) 725
HinP1I GCGC 1 cut(s) 725
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 2 cut(s) 142, 468
HinfI GANTC 4 cut(s) 333, 486, 854, 914
HpaII CCGG 3 cut(s) 209, 266, 296
Hpy166II GTNNAC 4 cut(s) 271, 379, 381, 954
Hpy188I TCNGA 4 cut(s) 115, 182, 245, 550
Hpy188III TCNNGA 5 cut(s) 77, 209, 539, 749, 787
Hpy8I GTNNAC 4 cut(s) 271, 379, 381, 954
HpyAV CCTTC 3 cut(s) 272, 594, 976
HpyCH4III ACNGT 3 cut(s) 106, 364, 577
HpyCH4V TGCA 9 cut(s) 194, 224, 240, 356, 392, 404, 755, 962, 975
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 2 cut(s) 200, 847
Hsp92II CATG 6 cut(s) 86, 257, 433, 508, 707, 790
HspAI GCGC 1 cut(s) 725
Kpn2I TCCGGA 1 cut(s) 208
Kzo9I GATC 2 cut(s) 110, 311
LmnI GCTCC 4 cut(s) 164, 183, 323, 816
Lsp1109I GCAGC 3 cut(s) 236, 465, 959
LweI GCATC 6 cut(s) 211, 227, 249, 401, 742, 949
MaeI CTAG 1 cut(s) 387
MaeIII GTNAC 5 cut(s) 28, 301, 449, 571, 659
MalI GATC 2 cut(s) 112, 313
MboI GATC 2 cut(s) 110, 311
MboII GAAGA 3 cut(s) 137, 182, 809
MfeI CAATTG 2 cut(s) 769, 792
MhlI GDGCHC 2 cut(s) 328, 813
MluCI AATT 9 cut(s) 183, 579, 689, 769, 792, 833, 881, 926, 963
MlyI GAGTC 2 cut(s) 495, 863
MnlI CCTC 6 cut(s) 29, 158, 347, 409, 756, 856
Mph1103I ATGCAT 1 cut(s) 242
MroI TCCGGA 1 cut(s) 208
MseI TTAA 9 cut(s) 366, 408, 465, 473, 521, 779, 860, 870, 930
MslI CAYNNNNRTG 3 cut(s) 245, 708, 750
MspI CCGG 3 cut(s) 209, 266, 296
MspR9I CCNGG 4 cut(s) 58, 162, 483, 888
MunI CAATTG 2 cut(s) 769, 792
MvaI CCWGG 4 cut(s) 58, 162, 483, 888
MwoI GCNNNNNNNGC 1 cut(s) 79
NdeII GATC 2 cut(s) 110, 311
NlaIII CATG 6 cut(s) 86, 257, 433, 508, 707, 790
NlaIV GGNNCC 2 cut(s) 55, 288
NmeAIII GCCGAG 1 cut(s) 832
NmuCI GTSAC 3 cut(s) 301, 449, 571
NsiI ATGCAT 1 cut(s) 242
NspV TTCGAA 1 cut(s) 924
PagI TCATGA 1 cut(s) 786
PfeI GAWTC 2 cut(s) 333, 914
PinAI ACCGGT 1 cut(s) 295
PkrI GCNGC 3 cut(s) 226, 480, 974
PleI GAGTC 2 cut(s) 494, 862
PpsI GAGTC 2 cut(s) 494, 862
PpuMI RGGWCCY 1 cut(s) 875
Psp124BI GAGCTC 2 cut(s) 328, 813
Psp5II RGGWCCY 1 cut(s) 875
Psp6I CCWGG 4 cut(s) 56, 160, 481, 886
PspFI CCCAGC 2 cut(s) 118, 623
PspGI CCWGG 4 cut(s) 56, 160, 481, 886
PspN4I GGNNCC 2 cut(s) 55, 288
PspPI GGNCC 2 cut(s) 599, 875
PspPPI RGGWCCY 1 cut(s) 875
RsaI GTAC 3 cut(s) 380, 423, 767
RsaNI GTAC 3 cut(s) 379, 422, 766
RseI CAYNNNNRTG 3 cut(s) 245, 708, 750
SacI GAGCTC 2 cut(s) 328, 813
SaqAI TTAA 9 cut(s) 366, 408, 465, 473, 521, 779, 860, 870, 930
SatI GCNGC 3 cut(s) 225, 479, 973
Sau3AI GATC 2 cut(s) 110, 311
Sau96I GGNCC 2 cut(s) 599, 875
SchI GAGTC 2 cut(s) 495, 863
ScrFI CCNGG 4 cut(s) 58, 162, 483, 888
SduI GDGCHC 2 cut(s) 328, 813
SfaNI GCATC 6 cut(s) 211, 227, 249, 401, 742, 949
SfuI TTCGAA 1 cut(s) 924
SinI GGWCC 1 cut(s) 875
SmiMI CAYNNNNRTG 3 cut(s) 245, 708, 750
SmlI CTYRAG 2 cut(s) 77, 338
SmoI CTYRAG 2 cut(s) 77, 338
Sse9I AATT 9 cut(s) 183, 579, 689, 769, 792, 833, 881, 926, 963
SspI AATATT 1 cut(s) 545
SspMI CTAG 1 cut(s) 387
SstI GAGCTC 2 cut(s) 328, 813
StyD4I CCNGG 4 cut(s) 56, 160, 481, 886
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 3 cut(s) 106, 364, 577
TaqI TCGA 1 cut(s) 924
TasI AATT 9 cut(s) 183, 579, 689, 769, 792, 833, 881, 926, 963
TatI WGTACW 2 cut(s) 378, 421
TfiI GAWTC 2 cut(s) 333, 914
Tru1I TTAA 9 cut(s) 366, 408, 465, 473, 521, 779, 860, 870, 930
Tru9I TTAA 9 cut(s) 366, 408, 465, 473, 521, 779, 860, 870, 930
TscAI CASTG 3 cut(s) 109, 961, 974
TseFI GTSAC 3 cut(s) 301, 449, 571
TseI GCWGC 3 cut(s) 224, 478, 972
Tsp45I GTSAC 3 cut(s) 301, 449, 571
TspDTI ATGAA 4 cut(s) 37, 595, 684, 692
TspRI CASTG 3 cut(s) 109, 961, 974
VpaK11BI GGWCC 1 cut(s) 875
XapI RAATTY 5 cut(s) 183, 689, 833, 881, 926
XcmI CCANNNNNNNNNTGG 1 cut(s) 646
XspI CTAG 1 cut(s) 387
Zsp2I ATGCAT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.