Rmu_co8173820.1_g000001

3-beta hydroxysteroid dehydrogenase/isomerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8173820.1
OG0000382
Physical Location & Seq
Reverse (-)
2 .. 290
289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8173820.1_g000001.1.cds

Sequence Viewer

Length: 187 bp
atgtctcgatttctcactgcaaaataccctgaatatcaaataccgacagctgattctttgaagggcattgaaggtcacaaaacgtgtgggtactcatcggagaagctcctcaagtctggattcaaatttaagcatgggctcgaagacatgtttgagggagcagttcaatcttgcagagaaaagggat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

62

Amino Acids

6.96

Weight (kDa)

8.62

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 125
AfaI GTAC 1 cut(s) 92
AflIII ACRYGT 2 cut(s) 83, 147
AgsI TTSAA 4 cut(s) 61, 71, 124, 167
AluBI AGCT 2 cut(s) 50, 106
AluI AGCT 2 cut(s) 50, 106
Alw26I GTCTC 1 cut(s) 9
ApoI RAATTY 1 cut(s) 125
BanII GRGCYC 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 9
BstNSI RCATGY 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 150
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
Csp6I GTAC 1 cut(s) 91
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 2 cut(s) 134, 148
CviJI RGCY 3 cut(s) 50, 106, 139
CviKI_1 RGCY 3 cut(s) 50, 106, 139
CviQI GTAC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 141
FaeI CATG 2 cut(s) 137, 151
FaiI YATR 2 cut(s) 135, 149
FatI CATG 2 cut(s) 133, 147
FriOI GRGCYC 1 cut(s) 141
Hin1II CATG 2 cut(s) 137, 151
HinfI GANTC 2 cut(s) 53, 120
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 2 cut(s) 6, 117
HpyAV CCTTC 2 cut(s) 55, 65
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 2 cut(s) 20, 174
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 2 cut(s) 137, 151
LmnI GCTCC 2 cut(s) 111, 158
LpnPI CCDG 2 cut(s) 42, 102
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 74
MboII GAAGA 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 1 cut(s) 125
MnlI CCTC 2 cut(s) 119, 148
MseI TTAA 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 50
NlaIII CATG 2 cut(s) 137, 151
NmuCI GTSAC 1 cut(s) 74
NspI RCATGY 1 cut(s) 151
PciI ACATGT 1 cut(s) 147
PfeI GAWTC 2 cut(s) 53, 120
PscI ACATGT 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SaqAI TTAA 1 cut(s) 129
SduI GDGCHC 1 cut(s) 141
SetI ASST 4 cut(s) 52, 76, 86, 108
SgeI CNNG 9 cut(s) 18, 41, 96, 124, 129, 146, 152, 160, 183
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 1 cut(s) 125
TaiI ACGT 1 cut(s) 86
TaqI TCGA 2 cut(s) 7, 141
TasI AATT 1 cut(s) 125
TfiI GAWTC 2 cut(s) 53, 120
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
TspRI CASTG 1 cut(s) 22
XapI RAATTY 1 cut(s) 125
XceI RCATGY 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.