Rorug01G0211400

Belongs to the STXBP unc-18 SEC1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000382
Physical Location & Seq
Reverse (-)
29885775 .. 29887489
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0211400.1

Sequence Viewer

Length: 612 bp
ATGGCAATAAGTTCGATTACCATTTTTGGGGTGCTAGGCAACATTATGTCAGGATTACTCTACCTTTCTCCTACCGTGGTCGTCGCCACTGTCAATGTTTTCGGTGCTGCTGTCGAGATTGTTTTCCTTACCATATTTCTACTTTTTGCACCACCAAGAATGAAGGTTAGGACTGCGATACTAGTTATAGTTCTGGATGTGGCATTTCCCGGAGCAACAATTTTACTTACTCACTTTCTGCTAGACGGAGATAAAAGGATCGATGTTGCTGGACTCTGGTGTGTAATCTTCAGCATGATTGCATATGCTTCCCCTCTTTCGGCTATGAAAACTGTGGTGGCGTTAAAGAGTGTGGAGTACATGCCTTTCCTTCTCTCTTTCATCTTTTTTCTTAATGGAGGAGTTTGGACAGTGTATGCCATTCTTGCGAAAGACTTGTTTGTTGGAATTCCAAATGGAAGTGGATTTTTACTTGGAACTGCTCAGCTGATTCTCTATTTCATATACTGGAAACCGAAGTCATCAAGGCAAGCATCTGACGGTTTAGAGGATCAACAGATCATAAGCGAAGCACTCATTTCTAATCCTTCACAGGGTAAAACTGAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04721 map04721
Pfam Domains
Protein Families
Sec1

Protein Analysis

203

Amino Acids

22.06

Weight (kDa)

6.71

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 91 - 173 7.6e-22 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 266, 558
AcsI RAATTY 1 cut(s) 447
AcuI CTGAAG 1 cut(s) 274
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 3 cut(s) 27, 319, 593
AhlI ACTAGT 1 cut(s) 181
AluBI AGCT 1 cut(s) 487
AluI AGCT 1 cut(s) 487
Alw21I GWGCWC 1 cut(s) 609
AlwI GGATC 2 cut(s) 266, 558
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 447
AsuC2I CCSGG 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 1 cut(s) 94
BcgI CGANNNNNNTGC 1 cut(s) 28
BcnI CCSGG 1 cut(s) 210
BcuI ACTAGT 1 cut(s) 181
BfaI CTAG 4 cut(s) 35, 182, 242, 610
BisI GCNGC 1 cut(s) 108
BlpI GCTNAGC 1 cut(s) 483
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 542
Bpu1102I GCTNAGC 1 cut(s) 483
BpuMI CCSGG 1 cut(s) 210
Bsa29I ATCGAT 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 319, 593
Bse1I ACTGG 1 cut(s) 512
BseCI ATCGAT 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 3 cut(s) 27, 319, 593
BseMII CTCAG 2 cut(s) 497, 594
BseNI ACTGG 1 cut(s) 512
BseRI GAGGAG 1 cut(s) 414
BseXI GCAGC 1 cut(s) 94
BshVI ATCGAT 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 609
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 3 cut(s) 27, 319, 593
Bsp1286I GDGCHC 1 cut(s) 609
Bsp143I GATC 3 cut(s) 258, 550, 558
Bsp1720I GCTNAGC 1 cut(s) 483
BspCNI CTCAG 2 cut(s) 496, 595
BspDI ATCGAT 1 cut(s) 261
BspPI GGATC 2 cut(s) 266, 558
BsrI ACTGG 1 cut(s) 512
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 3 cut(s) 258, 550, 558
Bst4CI ACNGT 5 cut(s) 76, 91, 334, 412, 542
BstC8I GCNNGC 1 cut(s) 531
BstDEI CTNAG 2 cut(s) 483, 603
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 3 cut(s) 261, 553, 561
BstMBI GATC 3 cut(s) 258, 550, 558
BstMWI GCNNNNNNNGC 1 cut(s) 425
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 94
Bsu15I ATCGAT 1 cut(s) 261
BsuTUI ATCGAT 1 cut(s) 261
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 2 cut(s) 87, 417
Cac8I GCNNGC 1 cut(s) 531
ClaI ATCGAT 1 cut(s) 261
Csp6I GTAC 1 cut(s) 358
CviAII CATG 2 cut(s) 295, 361
CviJI RGCY 2 cut(s) 323, 487
CviKI_1 RGCY 2 cut(s) 323, 487
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 2 cut(s) 483, 603
DpnI GATC 3 cut(s) 260, 552, 560
DpnII GATC 3 cut(s) 258, 550, 558
Eco57I CTGAAG 1 cut(s) 274
EcoRI GAATTC 1 cut(s) 447
FaeI CATG 2 cut(s) 298, 364
FatI CATG 2 cut(s) 294, 360
FauNDI CATATG 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 4 cut(s) 35, 182, 242, 610
GluI GCNGC 1 cut(s) 108
HapII CCGG 1 cut(s) 210
Hin1II CATG 2 cut(s) 298, 364
HinfI GANTC 2 cut(s) 273, 490
HpaII CCGG 1 cut(s) 210
Hpy188I TCNGA 1 cut(s) 538
Hpy188III TCNNGA 3 cut(s) 51, 115, 194
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 3 cut(s) 157, 380, 597
HpyCH4III ACNGT 5 cut(s) 76, 91, 334, 412, 542
HpyCH4V TGCA 2 cut(s) 149, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 425
HpyF3I CTNAG 2 cut(s) 483, 603
Hsp92II CATG 2 cut(s) 298, 364
Kzo9I GATC 3 cut(s) 258, 550, 558
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 7 cut(s) 36, 179, 223, 255, 262, 493, 578
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 1 cut(s) 542
MaeI CTAG 4 cut(s) 35, 182, 242, 610
MalI GATC 3 cut(s) 260, 552, 560
MboI GATC 3 cut(s) 258, 550, 558
MboII GAAGA 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 609
MluCI AATT 2 cut(s) 219, 447
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 1 cut(s) 424
MnlI CCTC 3 cut(s) 324, 392, 541
MseI TTAA 2 cut(s) 344, 393
MspA1I CMGCKG 1 cut(s) 487
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 425
NciI CCSGG 1 cut(s) 210
NdeI CATATG 1 cut(s) 304
NdeII GATC 3 cut(s) 258, 550, 558
NlaIII CATG 2 cut(s) 298, 364
NspI RCATGY 1 cut(s) 364
PfeI GAWTC 1 cut(s) 490
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
PvuII CAGCTG 1 cut(s) 487
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SaqAI TTAA 2 cut(s) 344, 393
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 3 cut(s) 258, 550, 558
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 609
SetI ASST 3 cut(s) 66, 168, 489
SfaNI GCATC 1 cut(s) 542
SpeI ACTAGT 1 cut(s) 181
Sse9I AATT 2 cut(s) 219, 447
SspMI CTAG 4 cut(s) 35, 182, 242, 610
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 5 cut(s) 76, 91, 334, 412, 542
TaqI TCGA 3 cut(s) 14, 114, 261
TasI AATT 2 cut(s) 219, 447
TatI WGTACW 1 cut(s) 357
TfiI GAWTC 1 cut(s) 490
Tru1I TTAA 2 cut(s) 344, 393
Tru9I TTAA 2 cut(s) 344, 393
TscAI CASTG 2 cut(s) 94, 417
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 4 cut(s) 176, 341, 370, 490
TspGWI ACGGA 1 cut(s) 261
TspRI CASTG 2 cut(s) 94, 417
XapI RAATTY 1 cut(s) 447
XceI RCATGY 1 cut(s) 364
XspI CTAG 4 cut(s) 35, 182, 242, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.