Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000382

Physical Location & Seq

Genomic Coordinates Reverse (-)

25526965 .. 25528950

Gene Structure 1986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00304900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAAGAAGTCAGAGGCACAGTTTGTGTAACTGGTGGAACAGGATATATAGCCTCATGGCTGATTCTGAGGCTGCTTCAGCATGGTTACTCGGTTCGAGCCACCATTAGATCCAACCCTGCTGAAGGCAAGAGAGATATCAGCTACCTGACAAGCCTTCCAGGAGCACAAGAGAAACTCCAAATCTTCCATGCAGATCTCAACAACCCCGAGACCTTCAACGACGCCATCCAAGGCTGCAACGGTGTCTTCCACCTTGCTCACCCCATGGACGTTGAAGGCAAAGAACCCGAGGAAACCGTTACCAAACGAGCCCTGGAAGGAACACTAGGCATTTTGAAGGCATGCCTACGTGGCAAGACCGTGAGGCGAGTGGTTTACACATCCACAAGCGTCTTTGAAGAAACTGATGAAAACACATGGAGTGAGGTTGATGTATGCAGAAGTAACAAGCTTGTGAGCTCTTCTTACTTGGTTTCCAAGACTCTGGTGGAGAGGACAGCCCTGGAATTTGCAGAGAGGAATGGTTTGGATCTTGTCACTGTGGTTTTGCCTATAGTAGTTGGACCCTTCGTTTGTCCAAATGTTCCTGCTTCCGTGTACATGGGCATGGCTCCCATTTTTGGTGACCAAGAGCAATGTAAATATCTTGTTAGCACATATATGGTGCACATAGATGATGTGGCGAGTGCCCATATCTTCCTTCTTGAACATGTTAATGCAAAAGGGAGGTACATTTGTTCGTCGATCCAAACAACGATTCATGAGTTATATGACTTTCTTTGCGCAAGATACCCAGAACTTCATATATCAATACCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0010422 GO:0010817 GO:0016128 GO:0016131 GO:0019216 GO:0019218 GO:0019222 GO:0031323 GO:0031326 GO:0032350 GO:0042445 GO:0044238 GO:0044424 GO:0044464 GO:0046885 GO:0046890 GO:0050789 GO:0050794 GO:0050810 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090030 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

274

Amino Acids

30.44

Weight (kDa)

5.51

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	7 - 143	3.1e-09	NmrA-like family
Epimerase	PF01370	8 - 242	1.6e-25	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	10 - 258	4.6e-16	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	10 - 189	6.2e-16	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	10 - 189	7.1e-12	Male sterility protein
NAD_binding_10	PF13460	12 - 163	3e-08	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca	FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica	MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica	Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis	pycom08g20120
rosa_chinensis	RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata	RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora	Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii	Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa	Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha	Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana	Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	787
AclWI	GGATC	3 cut(s)	105, 540, 742
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	2 cut(s)	62, 144
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	2 cut(s)	602, 734
AfiI	CCNNNNNNNGG	2 cut(s)	125, 623
AflIII	ACRYGT	1 cut(s)	712
AgsI	TTSAA	5 cut(s)	220, 278, 340, 401, 710
AjnI	CCWGG	3 cut(s)	160, 315, 504
AjuI	GAANNNNNNNTTGG	2 cut(s)	744, 776
AluBI	AGCT	3 cut(s)	144, 454, 462
AluI	AGCT	3 cut(s)	144, 454, 462
Alw21I	GWGCWC	3 cut(s)	169, 464, 672
Alw26I	GTCTC	1 cut(s)	206
Alw44I	GTGCAC	1 cut(s)	668
AlwI	GGATC	3 cut(s)	105, 540, 742
Ama87I	CYCGRG	2 cut(s)	209, 290
ApaLI	GTGCAC	1 cut(s)	668
ApeKI	GCWGC	2 cut(s)	73, 237
ApoI	RAATTY	1 cut(s)	509
ArsI	GACNNNNNNTTYG	2 cut(s)	558, 590
AspLEI	GCGC	1 cut(s)	788
AspS9I	GGNCC	1 cut(s)	566
AsuHPI	GGTGA	2 cut(s)	254, 638
AvaI	CYCGRG	2 cut(s)	209, 290
AvaII	GGWCC	1 cut(s)	566
BaeGI	GKGCMC	2 cut(s)	672, 694
BaeI	ACNNNNGTAYC	2 cut(s)	724, 757
BanII	GRGCYC	2 cut(s)	316, 464
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	3 cut(s)	169, 464, 672
BbvI	GCAGC	2 cut(s)	60, 224
BccI	CCATC	1 cut(s)	236
BciT130I	CCWGG	3 cut(s)	162, 317, 506
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	555
BglI	GCCNNNNNGGC	1 cut(s)	354
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	2 cut(s)	74, 238
BlsI	GCNGC	2 cut(s)	75, 239
Bme1390I	CCNGG	3 cut(s)	162, 317, 506
Bme18I	GGWCC	1 cut(s)	566
BmeT110I	CYCGRG	2 cut(s)	209, 290
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	2 cut(s)	568, 615
BmrFI	CCNGG	3 cut(s)	162, 317, 506
BpiI	GAAGAC	1 cut(s)	241
BsaAI	YACGTR	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	5 cut(s)	232, 267, 291, 315, 504
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 623
Bse1I	ACTGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	644
BseBI	CCWGG	3 cut(s)	162, 317, 506
BseDI	CCNNGG	5 cut(s)	232, 267, 291, 315, 504
BseGI	GGATG	2 cut(s)	228, 383
BseLI	CCNNNNNNNGG	2 cut(s)	125, 623
BseMI	GCAATG	1 cut(s)	644
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	37
BseSI	GKGCMC	2 cut(s)	672, 694
BseXI	GCAGC	2 cut(s)	60, 224
BsiHKAI	GWGCWC	3 cut(s)	169, 464, 672
BsiHKCI	CYCGRG	2 cut(s)	209, 290
BslI	CCNNNNNNNGG	2 cut(s)	125, 623
BsmAI	GTCTC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	206
BsoBI	CYCGRG	2 cut(s)	209, 290
Bsp1286I	GDGCHC	5 cut(s)	169, 316, 464, 672, 694
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	4 cut(s)	110, 196, 532, 747
Bsp19I	CCATGG	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	763
BspLI	GGNNCC	2 cut(s)	568, 615
BspPI	GGATC	3 cut(s)	105, 540, 742
BspQI	GCTCTTC	1 cut(s)	469
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	644
BsrGI	TGTACA	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	5 cut(s)	232, 267, 291, 315, 504
BssMI	GATC	4 cut(s)	110, 196, 532, 747
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	2 cut(s)	232, 267
Bst2UI	CCWGG	3 cut(s)	162, 317, 506
Bst4CI	ACNGT	5 cut(s)	22, 245, 301, 364, 544
Bst6I	CTCTTC	1 cut(s)	469
BstACI	GRCGYC	1 cut(s)	225
BstAUI	TGTACA	1 cut(s)	600
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	267
BstEII	GGTNACC	1 cut(s)	626
BstENI	CCTNNNNNAGG	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	228, 383
BstHHI	GCGC	1 cut(s)	788
BstKTI	GATC	4 cut(s)	113, 199, 535, 750
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	4 cut(s)	110, 196, 532, 747
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 354
BstNI	CCWGG	3 cut(s)	162, 317, 506
BstNSI	RCATGY	2 cut(s)	348, 716
BstPI	GGTNACC	1 cut(s)	626
BstSCI	CCNGG	3 cut(s)	160, 315, 504
BstSFI	CTRYAG	1 cut(s)	555
BstSLI	GKGCMC	2 cut(s)	672, 694
BstV1I	GCAGC	2 cut(s)	60, 224
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	3 cut(s)	110, 196, 532
BstXI	CCANNNNNNTGG	1 cut(s)	487
BstYI	RGATCY	3 cut(s)	110, 196, 532
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	228, 383
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	1 cut(s)	346
CciI	TCATGA	1 cut(s)	763
CfoI	GCGC	1 cut(s)	788
Cfr13I	GGNCC	1 cut(s)	566
CseI	GACGC	2 cut(s)	233, 382
Csp6I	GTAC	2 cut(s)	601, 733
CviQI	GTAC	2 cut(s)	601, 733
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	4 cut(s)	112, 198, 534, 749
DpnII	GATC	4 cut(s)	110, 196, 532, 747
Eam1104I	CTCTTC	1 cut(s)	469
EarI	CTCTTC	1 cut(s)	469
Ecl136II	GAGCTC	1 cut(s)	462
Eco130I	CCWWGG	2 cut(s)	232, 267
Eco24I	GRGCYC	2 cut(s)	316, 464
Eco31I	GGTCTC	1 cut(s)	206
Eco32I	GATATC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	566
Eco53kI	GAGCTC	1 cut(s)	462
Eco57I	CTGAAG	2 cut(s)	62, 144
Eco88I	CYCGRG	2 cut(s)	209, 290
Eco91I	GGTNACC	1 cut(s)	626
EcoICRI	GAGCTC	1 cut(s)	462
EcoNI	CCTNNNNNAGG	1 cut(s)	123
EcoO65I	GGTNACC	1 cut(s)	626
EcoRII	CCWGG	3 cut(s)	160, 315, 504
EcoRV	GATATC	1 cut(s)	139
EcoT14I	CCWWGG	2 cut(s)	232, 267
EcoT38I	GRGCYC	2 cut(s)	316, 464
ErhI	CCWWGG	2 cut(s)	232, 267
Fnu4HI	GCNGC	2 cut(s)	74, 238
FokI	GGATG	2 cut(s)	215, 370
FriOI	GRGCYC	2 cut(s)	316, 464
Fsp4HI	GCNGC	2 cut(s)	74, 238
FspBI	CTAG	1 cut(s)	329
FspI	TGCGCA	1 cut(s)	787
GlaI	GCGC	1 cut(s)	787
GluI	GCNGC	2 cut(s)	74, 238
HgaI	GACGC	2 cut(s)	233, 382
HhaI	GCGC	1 cut(s)	788
Hin1I	GRCGYC	1 cut(s)	225
Hin6I	GCGC	1 cut(s)	786
HinP1I	GCGC	1 cut(s)	786
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	3 cut(s)	64, 484, 760
HphI	GGTGA	2 cut(s)	254, 638
Hpy166II	GTNNAC	3 cut(s)	379, 601, 670
Hpy188I	TCNGA	2 cut(s)	14, 69
Hpy188III	TCNNGA	2 cut(s)	707, 764
Hpy8I	GTNNAC	3 cut(s)	379, 601, 670
Hpy99I	CGWCG	2 cut(s)	227, 748
HpyAV	CCTTC	8 cut(s)	119, 167, 226, 272, 314, 334, 580, 713
HpyCH4III	ACNGT	5 cut(s)	22, 245, 301, 364, 544
HpyCH4IV	ACGT	2 cut(s)	273, 352
HpyCH4V	TGCA	6 cut(s)	194, 240, 441, 515, 670, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 354
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	2 cut(s)	273, 352
Hsp92I	GRCGYC	1 cut(s)	225
HspAI	GCGC	1 cut(s)	786
Kzo9I	GATC	4 cut(s)	110, 196, 532, 747
LguI	GCTCTTC	1 cut(s)	469
LmnI	GCTCC	2 cut(s)	164, 619
Lsp1109I	GCAGC	2 cut(s)	60, 224
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	2 cut(s)	273, 352
MaeIII	GTNAC	6 cut(s)	28, 86, 301, 446, 538, 626
MalI	GATC	4 cut(s)	112, 198, 534, 749
MboI	GATC	4 cut(s)	110, 196, 532, 747
MboII	GAAGA	6 cut(s)	17, 178, 241, 413, 456, 691
MflI	RGATCY	3 cut(s)	110, 196, 532
MhlI	GDGCHC	5 cut(s)	169, 316, 464, 672, 694
MluCI	AATT	1 cut(s)	509
MlyI	GAGTC	1 cut(s)	478
MmeI	TCCRAC	2 cut(s)	138, 544
MnlI	CCTC	9 cut(s)	8, 63, 64, 286, 360, 421, 489, 513, 723
MseI	TTAA	1 cut(s)	717
MslI	CAYNNNNRTG	4 cut(s)	608, 662, 675, 717
MspR9I	CCNGG	3 cut(s)	162, 317, 506
MvaI	CCWGG	3 cut(s)	162, 317, 506
MwoI	GCNNNNNNNGC	2 cut(s)	79, 354
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	4 cut(s)	110, 196, 532, 747
NlaIV	GGNNCC	2 cut(s)	568, 615
NmuCI	GTSAC	2 cut(s)	538, 626
NsbI	TGCGCA	1 cut(s)	787
NspI	RCATGY	2 cut(s)	348, 716
PaeI	GCATGC	1 cut(s)	348
PagI	TCATGA	1 cut(s)	763
PciI	ACATGT	1 cut(s)	712
PciSI	GCTCTTC	1 cut(s)	469
PfeI	GAWTC	2 cut(s)	64, 760
PfoI	TCCNGGA	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	75, 239
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
Ppu21I	YACGTR	1 cut(s)	353
PscI	ACATGT	1 cut(s)	712
Psp124BI	GAGCTC	1 cut(s)	464
Psp6I	CCWGG	3 cut(s)	160, 315, 504
PspEI	GGTNACC	1 cut(s)	626
PspGI	CCWGG	3 cut(s)	160, 315, 504
PspN4I	GGNNCC	2 cut(s)	568, 615
PspPI	GGNCC	1 cut(s)	566
PsuI	RGATCY	3 cut(s)	110, 196, 532
RsaI	GTAC	2 cut(s)	602, 734
RsaNI	GTAC	2 cut(s)	601, 733
RseI	CAYNNNNRTG	4 cut(s)	608, 662, 675, 717
SacI	GAGCTC	1 cut(s)	464
SapI	GCTCTTC	1 cut(s)	469
SaqAI	TTAA	1 cut(s)	717
SatI	GCNGC	2 cut(s)	74, 238
Sau3AI	GATC	4 cut(s)	110, 196, 532, 747
Sau96I	GGNCC	1 cut(s)	566
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	3 cut(s)	162, 317, 506
SduI	GDGCHC	5 cut(s)	169, 316, 464, 672, 694
SfcI	CTRYAG	1 cut(s)	555
SinI	GGWCC	1 cut(s)	566
SmiMI	CAYNNNNRTG	4 cut(s)	608, 662, 675, 717
SphI	GCATGC	1 cut(s)	348
Sse9I	AATT	1 cut(s)	509
SspMI	CTAG	1 cut(s)	329
SstI	GAGCTC	1 cut(s)	464
StyD4I	CCNGG	3 cut(s)	160, 315, 504
StyI	CCWWGG	2 cut(s)	232, 267
TaaI	ACNGT	5 cut(s)	22, 245, 301, 364, 544
TaiI	ACGT	2 cut(s)	276, 355
TaqI	TCGA	2 cut(s)	97, 746
TasI	AATT	1 cut(s)	509
TatI	WGTACW	1 cut(s)	600
TfiI	GAWTC	2 cut(s)	64, 760
Tru1I	TTAA	1 cut(s)	717
Tru9I	TTAA	1 cut(s)	717
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	2 cut(s)	538, 626
TseI	GCWGC	2 cut(s)	73, 237
Tsp45I	GTSAC	2 cut(s)	538, 626
TspDTI	ATGAA	3 cut(s)	426, 752, 794
TspGWI	ACGGA	1 cut(s)	586
TspRI	CASTG	1 cut(s)	547
VneI	GTGCAC	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	566
XagI	CCTNNNNNAGG	1 cut(s)	123
XapI	RAATTY	1 cut(s)	509
XceI	RCATGY	2 cut(s)	348, 716
XcmI	CCANNNNNNNNNTGG	2 cut(s)	313, 487
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.