Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000382

Physical Location & Seq

Genomic Coordinates Forward (+)

45487906 .. 45491181

Gene Structure 3276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG210600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAGAGTGATCGGTCGATGGAAGAAGTCAGAGGTACAGTCTGTGTAACTGGTGGAACAGGATATATAGCGTCATGGCTGATTCTGAGGCTGCTTCAGCATGGTTACTCGGTTCGAGCCACCATTAGATCCAACCCTGCTAAAGGCAAGAGAGATATCAGCTACCTGACAAGCCTTCCAGGAGCACAAGAGAAACTCCAAATCTTCCATGCAGATCTCAACAACCCCGAGACCTTCAACAACGCCATCCAAGGCTGCACCGGTGTCTTCCACCTTGCTCACCCCATGGACGTTGAAGGCAAAGAACCCGAGGAAACCGTAACCAAACGAGCCCTGGAAGGAACACTAGGCATTTTGAAGGCATGCCTAAGTTGCAAGACGGTGAGGCGAGTGGTTTACACATCCAGTTTGGCCACAATATTGTACAACAGAAAGCGTCTTGAAGAAACTGATGAAAACACATGGAGTGAGGTTGATGTATGCAGAAGTAACAAGCTTGTGAGCTCTTACTTGGTTTCCAAGACTCTGGTGGAGAGGACAGCCCTGGAATTTGCAGAGAGGAATGGTTTGGATCTTGTCACTGTGGTTTTGCCTATAGTTGTTGGACCCTTCGTTTGTCCAAATGTTCCTGCTTCCGTGTACATGGGCATGGCTCCCATTTTTGGTATACTATTTTTCCCTTTATACTTTATAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0010422 GO:0010817 GO:0016128 GO:0016131 GO:0019216 GO:0019218 GO:0019222 GO:0031323 GO:0031326 GO:0032350 GO:0042445 GO:0044238 GO:0044424 GO:0044464 GO:0046885 GO:0046890 GO:0050789 GO:0050794 GO:0050810 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090030 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

232

Amino Acids

25.74

Weight (kDa)

6.9

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	13 - 134	5.1e-09	NmrA-like family
Epimerase	PF01370	14 - 204	1.2e-20	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	16 - 197	4.2e-18	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	16 - 197	9.6e-14	GDP-mannose 4,6 dehydratase
NAD_binding_4	PF07993	16 - 202	8.2e-13	Male sterility protein
NAD_binding_10	PF13460	18 - 139	6.2e-08	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca	FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica	MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica	Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis	pycom08g20120
rosa_chinensis	RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata	RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora	Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii	Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa	Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha	Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana	Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	692
AccI	GTMKAC	1 cut(s)	667
AclWI	GGATC	2 cut(s)	123, 579
AcoI	YGGCCR	1 cut(s)	411
AcsI	RAATTY	1 cut(s)	548
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	3 cut(s)	37, 425, 641
AfiI	CCNNNNNNNGG	2 cut(s)	143, 662
AgeI	ACCGGT	1 cut(s)	260
AgsI	TTSAA	4 cut(s)	238, 296, 358, 443
AjnI	CCWGG	3 cut(s)	178, 333, 543
AluBI	AGCT	3 cut(s)	162, 496, 504
AluI	AGCT	3 cut(s)	162, 496, 504
Alw21I	GWGCWC	2 cut(s)	187, 506
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	2 cut(s)	123, 579
Ama87I	CYCGRG	2 cut(s)	227, 308
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	2 cut(s)	91, 255
ApoI	RAATTY	1 cut(s)	548
ArsI	GACNNNNNNTTYG	2 cut(s)	597, 629
AsiGI	ACCGGT	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	605
AsuHPI	GGTGA	2 cut(s)	272, 394
AvaI	CYCGRG	2 cut(s)	227, 308
AvaII	GGWCC	1 cut(s)	605
BalI	TGGCCA	1 cut(s)	413
BanII	GRGCYC	2 cut(s)	334, 506
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	2 cut(s)	187, 506
BbvI	GCAGC	2 cut(s)	78, 242
BccI	CCATC	2 cut(s)	13, 254
BciT130I	CCWGG	3 cut(s)	180, 335, 545
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	2 cut(s)	347, 697
BfmI	CTRYAG	1 cut(s)	594
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	2 cut(s)	92, 256
BlsI	GCNGC	2 cut(s)	93, 257
Bme1390I	CCNGG	3 cut(s)	180, 335, 545
Bme18I	GGWCC	1 cut(s)	605
BmeT110I	CYCGRG	2 cut(s)	227, 308
BmgT120I	GGNCC	1 cut(s)	605
BmiI	GGNNCC	2 cut(s)	607, 654
BmrFI	CCNGG	3 cut(s)	180, 335, 545
BpiI	GAAGAC	1 cut(s)	259
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	5 cut(s)	250, 285, 309, 333, 543
BsaWI	WCCGGW	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 662
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	2 cut(s)	55, 405
BseBI	CCWGG	3 cut(s)	180, 335, 545
BseDI	CCNNGG	5 cut(s)	250, 285, 309, 333, 543
BseGI	GGATG	2 cut(s)	246, 401
BseLI	CCNNNNNNNGG	2 cut(s)	143, 662
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	2 cut(s)	55, 405
BseXI	GCAGC	2 cut(s)	78, 242
BsgI	GTGCAG	1 cut(s)	241
Bsh1285I	CGRYCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	413
BshTI	ACCGGT	1 cut(s)	260
BsiEI	CGRYCG	1 cut(s)	17
BsiHKAI	GWGCWC	2 cut(s)	187, 506
BsiHKCI	CYCGRG	2 cut(s)	227, 308
BsiSI	CCGG	1 cut(s)	261
BslI	CCNNNNNNNGG	2 cut(s)	143, 662
BsmAI	GTCTC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	413
Bso31I	GGTCTC	1 cut(s)	224
BsoBI	CYCGRG	2 cut(s)	227, 308
Bsp1286I	GDGCHC	3 cut(s)	187, 334, 506
Bsp1407I	TGTACA	2 cut(s)	423, 639
Bsp143I	GATC	4 cut(s)	10, 128, 214, 571
Bsp19I	CCATGG	1 cut(s)	285
BspANI	GGCC	1 cut(s)	413
BspCNI	CTCAG	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	607, 654
BspPI	GGATC	2 cut(s)	123, 579
BspTNI	GGTCTC	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	260
BsrGI	TGTACA	2 cut(s)	423, 639
BsrI	ACTGG	2 cut(s)	55, 405
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	5 cut(s)	250, 285, 309, 333, 543
BssMI	GATC	4 cut(s)	10, 128, 214, 571
BssNAI	GTATAC	1 cut(s)	668
BssT1I	CCWWGG	2 cut(s)	250, 285
Bst1107I	GTATAC	1 cut(s)	668
Bst2UI	CCWGG	3 cut(s)	180, 335, 545
Bst4CI	ACNGT	4 cut(s)	40, 319, 382, 583
BstAUI	TGTACA	2 cut(s)	423, 639
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	86, 368
BstDSI	CCRYGG	1 cut(s)	285
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	246, 401
BstKTI	GATC	4 cut(s)	13, 131, 217, 574
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	4 cut(s)	10, 128, 214, 571
BstMCI	CGRYCG	1 cut(s)	17
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 372
BstNI	CCWGG	3 cut(s)	180, 335, 545
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	3 cut(s)	178, 333, 543
BstSFI	CTRYAG	1 cut(s)	594
BstV1I	GCAGC	2 cut(s)	78, 242
BstV2I	GAAGAC	1 cut(s)	259
BstX2I	RGATCY	3 cut(s)	128, 214, 571
BstXI	CCANNNNNNTGG	1 cut(s)	526
BstYI	RGATCY	3 cut(s)	128, 214, 571
BstZ17I	GTATAC	1 cut(s)	668
BsuRI	GGCC	1 cut(s)	413
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	2 cut(s)	246, 401
BtsIMutI	CAGTG	1 cut(s)	579
Cac8I	GCNNGC	1 cut(s)	364
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	605
CseI	GACGC	2 cut(s)	60, 425
Csp6I	GTAC	3 cut(s)	36, 424, 640
CspAI	ACCGGT	1 cut(s)	260
CviAII	CATG	8 cut(s)	75, 101, 209, 286, 363, 462, 643, 649
CviQI	GTAC	3 cut(s)	36, 424, 640
DdeI	CTNAG	2 cut(s)	86, 368
DpnI	GATC	4 cut(s)	12, 130, 216, 573
DpnII	GATC	4 cut(s)	10, 128, 214, 571
EaeI	YGGCCR	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	504
Eco130I	CCWWGG	2 cut(s)	250, 285
Eco24I	GRGCYC	2 cut(s)	334, 506
Eco31I	GGTCTC	1 cut(s)	224
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	605
Eco53kI	GAGCTC	1 cut(s)	504
Eco57I	CTGAAG	1 cut(s)	80
Eco88I	CYCGRG	2 cut(s)	227, 308
EcoICRI	GAGCTC	1 cut(s)	504
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoRII	CCWGG	3 cut(s)	178, 333, 543
EcoRV	GATATC	1 cut(s)	157
EcoT14I	CCWWGG	2 cut(s)	250, 285
EcoT38I	GRGCYC	2 cut(s)	334, 506
ErhI	CCWWGG	2 cut(s)	250, 285
FaeI	CATG	8 cut(s)	78, 104, 212, 289, 366, 465, 646, 652
FatI	CATG	8 cut(s)	74, 100, 208, 285, 362, 461, 642, 648
FblI	GTMKAC	1 cut(s)	667
Fnu4HI	GCNGC	2 cut(s)	92, 256
FokI	GGATG	2 cut(s)	233, 388
FriOI	GRGCYC	2 cut(s)	334, 506
Fsp4HI	GCNGC	2 cut(s)	92, 256
FspBI	CTAG	2 cut(s)	347, 697
GluI	GCNGC	2 cut(s)	92, 256
HaeIII	GGCC	1 cut(s)	413
HapII	CCGG	1 cut(s)	261
HgaI	GACGC	2 cut(s)	60, 425
Hin1II	CATG	8 cut(s)	78, 104, 212, 289, 366, 465, 646, 652
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	2 cut(s)	82, 523
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	2 cut(s)	272, 394
Hpy166II	GTNNAC	3 cut(s)	397, 640, 668
Hpy188I	TCNGA	2 cut(s)	32, 87
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	3 cut(s)	397, 640, 668
HpyAV	CCTTC	6 cut(s)	185, 244, 290, 332, 352, 619
HpyCH4III	ACNGT	4 cut(s)	40, 319, 382, 583
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	5 cut(s)	212, 258, 375, 483, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 372
HpyF3I	CTNAG	2 cut(s)	86, 368
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	8 cut(s)	78, 104, 212, 289, 366, 465, 646, 652
Kzo9I	GATC	4 cut(s)	10, 128, 214, 571
LmnI	GCTCC	2 cut(s)	182, 658
Lsp1109I	GCAGC	2 cut(s)	78, 242
MaeI	CTAG	2 cut(s)	347, 697
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	5 cut(s)	46, 104, 319, 488, 577
MalI	GATC	4 cut(s)	12, 130, 216, 573
MboI	GATC	4 cut(s)	10, 128, 214, 571
MboII	GAAGA	4 cut(s)	35, 196, 259, 455
MflI	RGATCY	3 cut(s)	128, 214, 571
MhlI	GDGCHC	3 cut(s)	187, 334, 506
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	1 cut(s)	548
MluNI	TGGCCA	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	517
MmeI	TCCRAC	2 cut(s)	156, 583
MnlI	CCTC	7 cut(s)	26, 81, 304, 378, 463, 528, 552
Mox20I	TGGCCA	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	413
MslI	CAYNNNNRTG	1 cut(s)	647
Msp20I	TGGCCA	1 cut(s)	413
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	3 cut(s)	180, 335, 545
MvaI	CCWGG	3 cut(s)	180, 335, 545
MwoI	GCNNNNNNNGC	2 cut(s)	97, 372
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	4 cut(s)	10, 128, 214, 571
NlaIII	CATG	8 cut(s)	78, 104, 212, 289, 366, 465, 646, 652
NlaIV	GGNNCC	2 cut(s)	607, 654
NmuCI	GTSAC	1 cut(s)	577
NspI	RCATGY	1 cut(s)	366
PaeI	GCATGC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	82
PfoI	TCCNGGA	1 cut(s)	178
PinAI	ACCGGT	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	93, 257
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PsiI	TTATAA	1 cut(s)	692
Psp124BI	GAGCTC	1 cut(s)	506
Psp6I	CCWGG	3 cut(s)	178, 333, 543
PspGI	CCWGG	3 cut(s)	178, 333, 543
PspN4I	GGNNCC	2 cut(s)	607, 654
PspPI	GGNCC	1 cut(s)	605
PsuI	RGATCY	3 cut(s)	128, 214, 571
RsaI	GTAC	3 cut(s)	37, 425, 641
RsaNI	GTAC	3 cut(s)	36, 424, 640
RseI	CAYNNNNRTG	1 cut(s)	647
SacI	GAGCTC	1 cut(s)	506
SatI	GCNGC	2 cut(s)	92, 256
Sau3AI	GATC	4 cut(s)	10, 128, 214, 571
Sau96I	GGNCC	1 cut(s)	605
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	3 cut(s)	180, 335, 545
SduI	GDGCHC	3 cut(s)	187, 334, 506
SetI	ASST	9 cut(s)	37, 164, 168, 236, 276, 294, 474, 498, 506
SfcI	CTRYAG	1 cut(s)	594
SgrAI	CRCCGGYG	1 cut(s)	260
SinI	GGWCC	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	647
SphI	GCATGC	1 cut(s)	366
Sse9I	AATT	1 cut(s)	548
SspI	AATATT	1 cut(s)	420
SspMI	CTAG	2 cut(s)	347, 697
SstI	GAGCTC	1 cut(s)	506
StyD4I	CCNGG	3 cut(s)	178, 333, 543
StyI	CCWWGG	2 cut(s)	250, 285
TaaI	ACNGT	4 cut(s)	40, 319, 382, 583
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	17, 115
TasI	AATT	1 cut(s)	548
TatI	WGTACW	2 cut(s)	423, 639
TfiI	GAWTC	1 cut(s)	82
TscAI	CASTG	1 cut(s)	586
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	2 cut(s)	91, 255
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	1 cut(s)	468
TspGWI	ACGGA	1 cut(s)	625
TspRI	CASTG	1 cut(s)	586
VpaK11BI	GGWCC	1 cut(s)	605
XagI	CCTNNNNNAGG	1 cut(s)	141
XapI	RAATTY	1 cut(s)	548
XceI	RCATGY	1 cut(s)	366
XcmI	CCANNNNNNNNNTGG	2 cut(s)	331, 526
XmiI	GTMKAC	1 cut(s)	667
XspI	CTAG	2 cut(s)	347, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.