Rw1G019430

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000382
Physical Location & Seq
Forward (+)
42494891 .. 42497855
2965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G019430.1

Sequence Viewer

Length: 981 bp
ATGGAAGGAGAGAGAGGTAGAGTGTGTGTAACGGGAGGTTCAGGGTTTATAGGGTCCTGGTTGATTCTGAGGCTTCTTGAGCATGGTTACTATGTCAATACCACTGTTACATCAGACCCAGAACACAAGAAAGATTTAAGCTTCCTCACAGCTCTACCAGGAGCAGAAGAAAGGCTCCAAATATTCAACGCGGACCTAAGCAACCCTGAAAGTTTCAATGCAGCCATCCAAGGATGCGTTGGAGTGTTCCATGTTGCTACTCCGGTTGACTTCCAAGACAAGGAACTTGAAACCAAGCGCCTAGCGTTTTTTAGAACCTTGCCTGAAACAGTAGTGACCAAACGATCAGTCGATGGAGCCTTTGGTATCCTCAAGGCATGCCTATATGCAAAAACAGTGAAACGAGTTGTGTACACTTCTAGTGAGTCTGCTGTTGCATTTAACAACAAGGATGTGGAAGACATGGATGAGAGTTTTTGGAGCTCATACGCAATTTCGAAGACATTGACTGAAAGAGCAGTTCTTGAATTTTCGGAGAAAAATGGATTGGATGTTGTGACTGTAATTCCTTCTGTTGTTGTTGGCCCCTTCATTTGTCCCAAGTTCGTCGGCTCTGTTCGAAGCGCATTGGCTCTGGTTTTGGGTAACAAGGATGAATATCCTTTTCTTATCAATTTATCAGTGGTACATGTGGATGATGTCGCTAGAGCGCACATTTTCCTTTTCGAACATCATGATGCAAAAGGGAGATACAATTGTTCATCAAATGTCGTAACAATTGAAAAAATGGCCAAGTTCCTTTCTGCCAAATTCCCCGAATTTCAAATACCCTCAGTAGAGTCATTAAAGGAAGTTAAAGGTCCTAAGTTTCCTGGTCTGTCATCAAAGAAACTCTTGGATTCGGGTTTCAAATTTAAGTATGGGGTTGATGAGATGTTCAGTGAGGCAATTCACTGCTGCATAGTGAAGGGTTATCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00943 ko01110 map00943 map01110
Pfam Domains
Protein Families
Epimerase

Protein Analysis

326

Amino Acids

36.09

Weight (kDa)

6.27

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 8 - 253 1.4e-24 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 10 - 240 1.3e-14 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 10 - 265 8.8e-13 GDP-mannose 4,6 dehydratase
NAD_binding_10 PF13460 12 - 190 3.4e-08 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 191
AciI CCGC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 789
AcsI RAATTY 4 cut(s) 527, 809, 818, 911
AfaI GTAC 2 cut(s) 413, 687
AfiI CCNNNNNNNGG 1 cut(s) 280
AflIII ACRYGT 1 cut(s) 688
AgsI TTSAA 7 cut(s) 187, 217, 290, 527, 782, 824, 910
AjnI CCWGG 3 cut(s) 56, 157, 871
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
AluBI AGCT 3 cut(s) 141, 152, 483
AluI AGCT 3 cut(s) 141, 152, 483
Alw21I GWGCWC 1 cut(s) 485
AoxI GGCC 2 cut(s) 583, 789
ApeKI GCWGC 2 cut(s) 221, 957
ApoI RAATTY 4 cut(s) 527, 809, 818, 911
ArsI GACNNNNNNTTYG 2 cut(s) 333, 365
AspLEI GCGC 3 cut(s) 300, 626, 712
AspS9I GGNCC 4 cut(s) 54, 193, 584, 860
AsuII TTCGAA 3 cut(s) 497, 619, 726
AvaII GGWCC 3 cut(s) 54, 193, 860
BaeI ACNNNNGTAYC 2 cut(s) 742, 775
BalI TGGCCA 1 cut(s) 791
BanII GRGCYC 1 cut(s) 485
BbsI GAAGAC 2 cut(s) 465, 506
Bbv12I GWGCWC 1 cut(s) 485
BbvI GCAGC 2 cut(s) 233, 944
BccI CCATC 2 cut(s) 233, 347
BciT130I CCWGG 3 cut(s) 58, 159, 873
BciVI GTATCC 1 cut(s) 377
BfaI CTAG 3 cut(s) 302, 420, 705
BfoI RGCGCY 1 cut(s) 301
BfuI GTATCC 1 cut(s) 377
BisI GCNGC 2 cut(s) 222, 958
BlsI GCNGC 2 cut(s) 223, 959
Bme1390I CCNGG 3 cut(s) 58, 159, 873
Bme18I GGWCC 3 cut(s) 54, 193, 860
BmgT120I GGNCC 4 cut(s) 54, 193, 584, 860
BmiI GGNNCC 4 cut(s) 55, 176, 358, 586
BmrFI CCNGG 3 cut(s) 58, 159, 873
BmsI GCATC 2 cut(s) 224, 727
BpiI GAAGAC 2 cut(s) 465, 506
Bpu10I CCTNAGC 1 cut(s) 197
Bpu14I TTCGAA 3 cut(s) 497, 619, 726
BpuEI CTTGAG 2 cut(s) 98, 356
BsaBI GATNNNNATC 1 cut(s) 657
BsaJI CCNNGG 1 cut(s) 229
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse8I GATNNNNATC 1 cut(s) 657
BseBI CCWGG 3 cut(s) 58, 159, 873
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 7 cut(s) 225, 239, 457, 472, 556, 658, 700
BseJI GATNNNNATC 1 cut(s) 657
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMII CTCAG 2 cut(s) 59, 846
BseXI GCAGC 2 cut(s) 233, 944
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 2 cut(s) 585, 791
BsiHKAI GWGCWC 1 cut(s) 485
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 582
BsnI GGCC 2 cut(s) 585, 791
Bsp119I TTCGAA 3 cut(s) 497, 619, 726
Bsp1286I GDGCHC 1 cut(s) 485
Bsp1407I TGTACA 1 cut(s) 411
Bsp143I GATC 1 cut(s) 344
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 585, 791
BspCNI CTCAG 2 cut(s) 60, 845
BspFNI CGCG 1 cut(s) 191
BspHI TCATGA 1 cut(s) 733
BspLI GGNNCC 4 cut(s) 55, 176, 358, 586
BspT104I TTCGAA 3 cut(s) 497, 619, 726
BsrGI TGTACA 1 cut(s) 411
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 1 cut(s) 344
BssT1I CCWWGG 1 cut(s) 229
Bst2UI CCWGG 3 cut(s) 58, 159, 873
Bst4CI ACNGT 4 cut(s) 106, 331, 397, 562
BstAUI TGTACA 1 cut(s) 411
BstBI TTCGAA 3 cut(s) 497, 619, 726
BstC8I GCNNGC 1 cut(s) 379
BstDEI CTNAG 4 cut(s) 68, 197, 832, 864
BstF5I GGATG 7 cut(s) 225, 239, 457, 472, 556, 658, 700
BstFNI CGCG 1 cut(s) 191
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 3 cut(s) 300, 626, 712
BstKTI GATC 1 cut(s) 347
BstMBI GATC 1 cut(s) 344
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 3 cut(s) 58, 159, 873
BstNSI RCATGY 2 cut(s) 381, 692
BstSCI CCNGG 3 cut(s) 56, 157, 871
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 2 cut(s) 233, 944
BstV2I GAAGAC 2 cut(s) 465, 506
BsuI GTATCC 1 cut(s) 377
BsuRI GGCC 2 cut(s) 585, 791
BtsCI GGATG 7 cut(s) 225, 239, 457, 472, 556, 658, 700
BtsI GCAGTG 1 cut(s) 952
BtsIMutI CAGTG 5 cut(s) 102, 402, 687, 946, 952
Cac8I GCNNGC 1 cut(s) 379
CciI TCATGA 1 cut(s) 733
CfoI GCGC 3 cut(s) 300, 626, 712
Cfr13I GGNCC 4 cut(s) 54, 193, 584, 860
Csp6I GTAC 2 cut(s) 412, 686
CviAII CATG 6 cut(s) 83, 251, 378, 463, 689, 734
CviQI GTAC 2 cut(s) 412, 686
DdeI CTNAG 4 cut(s) 68, 197, 832, 864
DpnI GATC 1 cut(s) 346
DpnII GATC 1 cut(s) 344
EaeI YGGCCR 1 cut(s) 789
Ecl136II GAGCTC 1 cut(s) 483
Eco130I CCWWGG 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 485
Eco47I GGWCC 3 cut(s) 54, 193, 860
Eco53kI GAGCTC 1 cut(s) 483
EcoICRI GAGCTC 1 cut(s) 483
EcoO109I RGGNCCY 2 cut(s) 54, 860
EcoRII CCWGG 3 cut(s) 56, 157, 871
EcoT14I CCWWGG 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 485
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 6 cut(s) 86, 254, 381, 466, 692, 737
FalI AAGNNNNNCTT 2 cut(s) 878, 910
FaqI GGGAC 1 cut(s) 582
FatI CATG 6 cut(s) 82, 250, 377, 462, 688, 733
Fnu4HI GCNGC 2 cut(s) 222, 958
FokI GGATG 7 cut(s) 212, 246, 464, 479, 563, 665, 707
FriOI GRGCYC 1 cut(s) 485
Fsp4HI GCNGC 2 cut(s) 222, 958
FspBI CTAG 3 cut(s) 302, 420, 705
GlaI GCGC 3 cut(s) 299, 625, 711
GluI GCNGC 2 cut(s) 222, 958
HaeII RGCGCY 1 cut(s) 301
HaeIII GGCC 2 cut(s) 585, 791
HapII CCGG 1 cut(s) 263
HhaI GCGC 3 cut(s) 300, 626, 712
Hin1II CATG 6 cut(s) 86, 254, 381, 466, 692, 737
Hin6I GCGC 3 cut(s) 298, 624, 710
HinP1I GCGC 3 cut(s) 298, 624, 710
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 4 cut(s) 64, 425, 839, 899
HpaII CCGG 1 cut(s) 263
Hpy166II GTNNAC 3 cut(s) 268, 412, 414
Hpy188I TCNGA 3 cut(s) 69, 115, 535
Hpy188III TCNNGA 3 cut(s) 77, 524, 734
Hpy8I GTNNAC 3 cut(s) 268, 412, 414
Hpy99I CGWCG 1 cut(s) 611
HpyAV CCTTC 3 cut(s) 579, 598, 961
HpyCH4III ACNGT 4 cut(s) 106, 331, 397, 562
HpyCH4V TGCA 5 cut(s) 221, 389, 437, 740, 960
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 4 cut(s) 68, 197, 832, 864
Hsp92II CATG 6 cut(s) 86, 254, 381, 466, 692, 737
HspAI GCGC 3 cut(s) 298, 624, 710
Kzo9I GATC 1 cut(s) 344
LmnI GCTCC 4 cut(s) 161, 180, 356, 480
Lsp1109I GCAGC 2 cut(s) 233, 944
LweI GCATC 2 cut(s) 224, 727
MaeI CTAG 3 cut(s) 302, 420, 705
MaeIII GTNAC 7 cut(s) 28, 86, 106, 334, 556, 644, 772
MalI GATC 1 cut(s) 346
MboI GATC 1 cut(s) 344
MboII GAAGA 3 cut(s) 179, 470, 511
MfeI CAATTG 2 cut(s) 754, 777
MhlI GDGCHC 1 cut(s) 485
MlsI TGGCCA 1 cut(s) 791
MluNI TGGCCA 1 cut(s) 791
MlyI GAGTC 2 cut(s) 434, 848
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 7 cut(s) 8, 29, 63, 155, 380, 841, 937
Mox20I TGGCCA 1 cut(s) 791
MscI TGGCCA 1 cut(s) 791
MseI TTAA 5 cut(s) 137, 441, 845, 855, 915
MslI CAYNNNNRTG 2 cut(s) 693, 735
Msp20I TGGCCA 1 cut(s) 791
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 3 cut(s) 58, 159, 873
MunI CAATTG 2 cut(s) 754, 777
MvaI CCWGG 3 cut(s) 58, 159, 873
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 79
NdeII GATC 1 cut(s) 344
NlaIII CATG 6 cut(s) 86, 254, 381, 466, 692, 737
NlaIV GGNNCC 4 cut(s) 55, 176, 358, 586
NmuCI GTSAC 2 cut(s) 334, 556
NspI RCATGY 2 cut(s) 381, 692
NspV TTCGAA 3 cut(s) 497, 619, 726
PaeI GCATGC 1 cut(s) 381
PagI TCATGA 1 cut(s) 733
PciI ACATGT 1 cut(s) 688
PfeI GAWTC 2 cut(s) 64, 899
PkrI GCNGC 2 cut(s) 223, 959
PleI GAGTC 2 cut(s) 433, 847
PpsI GAGTC 2 cut(s) 433, 847
PpuMI RGGWCCY 2 cut(s) 54, 860
PscI ACATGT 1 cut(s) 688
Psp124BI GAGCTC 1 cut(s) 485
Psp5II RGGWCCY 2 cut(s) 54, 860
Psp6I CCWGG 3 cut(s) 56, 157, 871
PspGI CCWGG 3 cut(s) 56, 157, 871
PspN4I GGNNCC 4 cut(s) 55, 176, 358, 586
PspPI GGNCC 4 cut(s) 54, 193, 584, 860
PspPPI RGGWCCY 2 cut(s) 54, 860
RsaI GTAC 2 cut(s) 413, 687
RsaNI GTAC 2 cut(s) 412, 686
RseI CAYNNNNRTG 2 cut(s) 693, 735
SacI GAGCTC 1 cut(s) 485
SaqAI TTAA 5 cut(s) 137, 441, 845, 855, 915
SatI GCNGC 2 cut(s) 222, 958
Sau3AI GATC 1 cut(s) 344
Sau96I GGNCC 4 cut(s) 54, 193, 584, 860
SchI GAGTC 2 cut(s) 434, 848
ScrFI CCNGG 3 cut(s) 58, 159, 873
SduI GDGCHC 1 cut(s) 485
SetI ASST 8 cut(s) 19, 40, 143, 154, 198, 320, 485, 862
SfaNI GCATC 2 cut(s) 224, 727
SfuI TTCGAA 3 cut(s) 497, 619, 726
SinI GGWCC 3 cut(s) 54, 193, 860
SmiMI CAYNNNNRTG 2 cut(s) 693, 735
SmlI CTYRAG 2 cut(s) 77, 371
SmoI CTYRAG 2 cut(s) 77, 371
SphI GCATGC 1 cut(s) 381
SsiI CCGC 1 cut(s) 191
SspI AATATT 1 cut(s) 183
SspMI CTAG 3 cut(s) 302, 420, 705
SstI GAGCTC 1 cut(s) 485
StyD4I CCNGG 3 cut(s) 56, 157, 871
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 4 cut(s) 106, 331, 397, 562
TaqI TCGA 4 cut(s) 351, 497, 619, 726
TatI WGTACW 1 cut(s) 411
TfiI GAWTC 2 cut(s) 64, 899
Tru1I TTAA 5 cut(s) 137, 441, 845, 855, 915
Tru9I TTAA 5 cut(s) 137, 441, 845, 855, 915
TscAI CASTG 5 cut(s) 109, 402, 687, 946, 959
TseFI GTSAC 2 cut(s) 334, 556
TseI GCWGC 2 cut(s) 221, 957
Tsp45I GTSAC 2 cut(s) 334, 556
TspDTI ATGAA 3 cut(s) 580, 669, 750
TspRI CASTG 5 cut(s) 109, 402, 687, 946, 959
VpaK11BI GGWCC 3 cut(s) 54, 193, 860
XapI RAATTY 4 cut(s) 527, 809, 818, 911
XceI RCATGY 2 cut(s) 381, 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XspI CTAG 3 cut(s) 302, 420, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.