MD02G1205000.v1.1

Male sterility protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
20491837 .. 20495213
3377 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1205000.v1.1.491

Sequence Viewer

Length: 990 bp
ATGGAAGAGGGTAGGGGAACAGTTTGTGTAACTGGTGGAACAGGATATGTCGCTTCTTGGCTGATTATGAGGCTTCTTCAGCATGGTTACTCCGTTCGAGCTACGGTTAGATTCAATCCTGCAGCTGAAAGCAAGAGAGATATCAGCTACCTAACAACCCTACCAGGAGCATCGGACAGACTCCAAATCTTCCATGCAGATCTCAACCAACCTGAGACTTTTGATGAGGCCATCCAAGGCTGCACCGGAGTCTTCCACCTTGCTCACCCTATGGACATTGATAACAAAGAGCCAGAGGAAACTGTGACCAAGAGAGCCCTAGAAGGAACCCTAGGTATTTTGAAGGCATGCCTGAACTCCAAGACTGTGAAACGCATCGTTTACACTTCTAGTTTGGCAGCAATATTGTTCAACAGCAAAGGTTTAAGTGAAACTGATGAAAATACATGGAGTGAGATCGATATCTGCAAAAGCAGCGGTCTTGTAGGCTCTTCTTACTTGGTTTCTAAGACTGTGGTGGAGCAGACGGCTTTGGAGTTTGCAGAAAAACATGGATTGGATGTTGTCACTGTGATTCTTCCCATAGTTGTTGGACCCTTCATTTGTTCAAATATTCCTTCTTCGGTGTACATGGGAATGGCTCCCATTTCTGGTAACCAGGATCTATGTAAGTATCTTATTAACACATATATGGTGCACATAGATGATGTAGCAAGTGCACATATCTATCTTCTGGAGTACCCTAATGCAAAAGGAAGGTACATTTGTTCGTCAGTGCAAACATCGATTCATGAATTATATGAATTTCTTCCTCCAAGATACCCCGAACTTCAAATACAAATACCAGATTACTTAAAGGAGGTCAAAGGTTACAAAGGAACTAAGGTCTCTTCAAAGAAACTGTTGAATACTGGATTCGAATTCAAATGCGGCCTTGGTGAAATGTTTGATGGCGCTGTTCAATCCTACAAAGAGAAGGGTTTTCTTTAA

Protein Analysis

330

Amino Acids

36.34

Weight (kDa)

5.8

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 6 - 131 3.5e-08 NmrA-like family
Epimerase PF01370 8 - 251 2.3e-22 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 10 - 190 1.3e-15 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 10 - 268 8.6e-14 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 10 - 203 2.5e-12 Male sterility protein
NAD_binding_10 PF13460 12 - 134 8.3e-08 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 477, 930
AclWI GGATC 1 cut(s) 669
AcsI RAATTY 2 cut(s) 803, 920
AcuI CTGAAG 1 cut(s) 62
AfaI GTAC 3 cut(s) 629, 740, 761
AfiI CCNNNNNNNGG 1 cut(s) 650
AgsI TTSAA 9 cut(s) 115, 343, 412, 609, 833, 894, 907, 925, 962
AjnI CCWGG 2 cut(s) 163, 657
AluBI AGCT 3 cut(s) 101, 125, 147
AluI AGCT 3 cut(s) 101, 125, 147
Alw21I GWGCWC 2 cut(s) 699, 721
Alw26I GTCTC 2 cut(s) 209, 892
Alw44I GTGCAC 2 cut(s) 695, 717
AlwI GGATC 1 cut(s) 669
AoxI GGCC 2 cut(s) 228, 931
ApaLI GTGCAC 2 cut(s) 695, 717
ApeKI GCWGC 4 cut(s) 122, 240, 398, 474
ApoI RAATTY 2 cut(s) 803, 920
ArsI GACNNNNNNTTYG 2 cut(s) 585, 617
Asp700I GAANNNNTTC 1 cut(s) 807
AspA2I CCTAGG 1 cut(s) 331
AspLEI GCGC 1 cut(s) 956
AspS9I GGNCC 1 cut(s) 593
AsuHPI GGTGA 2 cut(s) 257, 950
AsuII TTCGAA 1 cut(s) 918
AvaII GGWCC 1 cut(s) 593
AvrII CCTAGG 1 cut(s) 331
BaeGI GKGCMC 2 cut(s) 699, 721
BaeI ACNNNNGTAYC 2 cut(s) 751, 784
BanII GRGCYC 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 244
Bbv12I GWGCWC 2 cut(s) 699, 721
BbvI GCAGC 4 cut(s) 134, 227, 410, 486
BccI CCATC 2 cut(s) 239, 944
BceAI ACGGC 1 cut(s) 543
BciT130I CCWGG 2 cut(s) 165, 659
BcoDI GTCTC 2 cut(s) 209, 892
BfaI CTAG 3 cut(s) 320, 332, 390
BfmI CTRYAG 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 957
BglII AGATCT 1 cut(s) 199
BisI GCNGC 5 cut(s) 123, 241, 399, 475, 931
BlnI CCTAGG 1 cut(s) 331
BlsI GCNGC 5 cut(s) 124, 242, 400, 476, 932
Bme1390I CCNGG 2 cut(s) 165, 659
Bme18I GGWCC 1 cut(s) 593
BmgT120I GGNCC 1 cut(s) 593
BmiI GGNNCC 3 cut(s) 328, 595, 642
BmrFI CCNGG 2 cut(s) 165, 659
BmsI GCATC 2 cut(s) 179, 384
BpiI GAAGAC 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 755
Bpu14I TTCGAA 1 cut(s) 918
Bsa29I ATCGAT 2 cut(s) 459, 785
BsaBI GATNNNNATC 1 cut(s) 461
BsaI GGTCTC 1 cut(s) 892
BsaJI CCNNGG 3 cut(s) 235, 331, 934
BsaWI WCCGGW 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 650
Bse1I ACTGG 2 cut(s) 37, 916
Bse8I GATNNNNATC 1 cut(s) 461
BseBI CCWGG 2 cut(s) 165, 659
BseCI ATCGAT 2 cut(s) 459, 785
BseDI CCNNGG 3 cut(s) 235, 331, 934
BseGI GGATG 2 cut(s) 231, 565
BseJI GATNNNNATC 1 cut(s) 461
BseLI CCNNNNNNNGG 1 cut(s) 650
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 2 cut(s) 37, 916
BseSI GKGCMC 2 cut(s) 699, 721
BseXI GCAGC 4 cut(s) 134, 227, 410, 486
BsgI GTGCAG 1 cut(s) 226
BshFI GGCC 2 cut(s) 230, 933
BshVI ATCGAT 2 cut(s) 459, 785
BsiHKAI GWGCWC 2 cut(s) 699, 721
BsiSI CCGG 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 650
BsmAI GTCTC 2 cut(s) 209, 892
BsnI GGCC 2 cut(s) 230, 933
Bso31I GGTCTC 1 cut(s) 892
Bsp119I TTCGAA 1 cut(s) 918
Bsp1286I GDGCHC 3 cut(s) 319, 699, 721
Bsp1407I TGTACA 1 cut(s) 627
Bsp143I GATC 3 cut(s) 199, 456, 661
BspACI CCGC 2 cut(s) 477, 930
BspANI GGCC 2 cut(s) 230, 933
BspCNI CTCAG 1 cut(s) 205
BspDI ATCGAT 2 cut(s) 459, 785
BspHI TCATGA 1 cut(s) 790
BspLI GGNNCC 3 cut(s) 328, 595, 642
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 1 cut(s) 669
BspQI GCTCTTC 1 cut(s) 496
BspT104I TTCGAA 1 cut(s) 918
BspTNI GGTCTC 1 cut(s) 892
BsrGI TGTACA 1 cut(s) 627
BsrI ACTGG 2 cut(s) 37, 916
BssECI CCNNGG 3 cut(s) 235, 331, 934
BssMI GATC 3 cut(s) 199, 456, 661
BssT1I CCWWGG 3 cut(s) 235, 331, 934
Bst2UI CCWGG 2 cut(s) 165, 659
Bst4CI ACNGT 7 cut(s) 22, 106, 304, 367, 514, 571, 903
Bst6I CTCTTC 2 cut(s) 496, 895
BstAUI TGTACA 1 cut(s) 627
BstBI TTCGAA 1 cut(s) 918
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 3 cut(s) 213, 507, 882
BstEII GGTNACC 1 cut(s) 653
BstF5I GGATG 2 cut(s) 231, 565
BstH2I RGCGCY 1 cut(s) 957
BstHHI GCGC 1 cut(s) 956
BstKTI GATC 3 cut(s) 202, 459, 664
BstMAI GTCTC 2 cut(s) 209, 892
BstMBI GATC 3 cut(s) 199, 456, 661
BstMWI GCNNNNNNNGC 2 cut(s) 79, 474
BstNI CCWGG 2 cut(s) 165, 659
BstNSI RCATGY 1 cut(s) 351
BstPI GGTNACC 1 cut(s) 653
BstSCI CCNGG 2 cut(s) 163, 657
BstSFI CTRYAG 1 cut(s) 120
BstSLI GKGCMC 2 cut(s) 699, 721
BstV1I GCAGC 4 cut(s) 134, 227, 410, 486
BstV2I GAAGAC 1 cut(s) 244
BstX2I RGATCY 2 cut(s) 199, 661
BstYI RGATCY 2 cut(s) 199, 661
Bsu15I ATCGAT 2 cut(s) 459, 785
BsuRI GGCC 2 cut(s) 230, 933
BsuTUI ATCGAT 2 cut(s) 459, 785
BtsCI GGATG 2 cut(s) 231, 565
BtsIMutI CAGTG 2 cut(s) 567, 780
Cac8I GCNNGC 1 cut(s) 349
CciI TCATGA 1 cut(s) 790
CfoI GCGC 1 cut(s) 956
Cfr13I GGNCC 1 cut(s) 593
ClaI ATCGAT 2 cut(s) 459, 785
Csp6I GTAC 3 cut(s) 628, 739, 760
CviAII CATG 7 cut(s) 83, 194, 348, 447, 551, 631, 791
CviQI GTAC 3 cut(s) 628, 739, 760
DdeI CTNAG 3 cut(s) 213, 507, 882
DpnI GATC 3 cut(s) 201, 458, 663
DpnII GATC 3 cut(s) 199, 456, 661
Eam1104I CTCTTC 2 cut(s) 496, 895
EarI CTCTTC 2 cut(s) 496, 895
Eco130I CCWWGG 3 cut(s) 235, 331, 934
Eco24I GRGCYC 1 cut(s) 319
Eco31I GGTCTC 1 cut(s) 892
Eco32I GATATC 2 cut(s) 142, 463
Eco47I GGWCC 1 cut(s) 593
Eco57I CTGAAG 1 cut(s) 62
Eco91I GGTNACC 1 cut(s) 653
EcoO65I GGTNACC 1 cut(s) 653
EcoRI GAATTC 1 cut(s) 920
EcoRII CCWGG 2 cut(s) 163, 657
EcoRV GATATC 2 cut(s) 142, 463
EcoT14I CCWWGG 3 cut(s) 235, 331, 934
EcoT38I GRGCYC 1 cut(s) 319
ErhI CCWWGG 3 cut(s) 235, 331, 934
FaeI CATG 7 cut(s) 86, 197, 351, 450, 554, 634, 794
FatI CATG 7 cut(s) 82, 193, 347, 446, 550, 630, 790
Fnu4HI GCNGC 5 cut(s) 123, 241, 399, 475, 931
FokI GGATG 2 cut(s) 218, 572
FriOI GRGCYC 1 cut(s) 319
Fsp4HI GCNGC 5 cut(s) 123, 241, 399, 475, 931
FspBI CTAG 3 cut(s) 320, 332, 390
GlaI GCGC 1 cut(s) 955
GluI GCNGC 5 cut(s) 123, 241, 399, 475, 931
GsuI CTGGAG 1 cut(s) 755
HaeII RGCGCY 1 cut(s) 957
HaeIII GGCC 2 cut(s) 230, 933
HapII CCGG 1 cut(s) 246
HhaI GCGC 1 cut(s) 956
Hin1II CATG 7 cut(s) 86, 197, 351, 450, 554, 634, 794
Hin6I GCGC 1 cut(s) 954
HinP1I GCGC 1 cut(s) 954
HinfI GANTC 6 cut(s) 111, 180, 249, 574, 787, 915
HpaII CCGG 1 cut(s) 246
HphI GGTGA 2 cut(s) 257, 950
Hpy166II GTNNAC 4 cut(s) 382, 628, 697, 719
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 2 cut(s) 734, 791
Hpy8I GTNNAC 4 cut(s) 382, 628, 697, 719
HpyAV CCTTC 6 cut(s) 317, 337, 607, 627, 750, 970
HpyCH4III ACNGT 7 cut(s) 22, 106, 304, 367, 514, 571, 903
HpyCH4V TGCA 9 cut(s) 122, 197, 243, 468, 542, 697, 719, 749, 778
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 474
HpyF3I CTNAG 3 cut(s) 213, 507, 882
Hsp92II CATG 7 cut(s) 86, 197, 351, 450, 554, 634, 794
HspAI GCGC 1 cut(s) 954
Kzo9I GATC 3 cut(s) 199, 456, 661
LguI GCTCTTC 1 cut(s) 496
LmnI GCTCC 3 cut(s) 167, 520, 646
Lsp1109I GCAGC 4 cut(s) 134, 227, 410, 486
LweI GCATC 2 cut(s) 179, 384
MaeI CTAG 3 cut(s) 320, 332, 390
MaeIII GTNAC 6 cut(s) 28, 86, 304, 565, 653, 869
MalI GATC 3 cut(s) 201, 458, 663
MboI GATC 3 cut(s) 199, 456, 661
MflI RGATCY 2 cut(s) 199, 661
MhlI GDGCHC 3 cut(s) 319, 699, 721
MluCI AATT 3 cut(s) 794, 803, 920
MlyI GAGTC 2 cut(s) 174, 258
MmeI TCCRAC 1 cut(s) 571
MnlI CCTC 5 cut(s) 63, 220, 289, 822, 853
MroXI GAANNNNTTC 1 cut(s) 807
MseI TTAA 4 cut(s) 425, 681, 854, 988
MslI CAYNNNNRTG 3 cut(s) 635, 689, 702
MspA1I CMGCKG 2 cut(s) 125, 477
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 2 cut(s) 165, 659
MvaI CCWGG 2 cut(s) 165, 659
MwoI GCNNNNNNNGC 2 cut(s) 79, 474
NdeII GATC 3 cut(s) 199, 456, 661
NlaIII CATG 7 cut(s) 86, 197, 351, 450, 554, 634, 794
NlaIV GGNNCC 3 cut(s) 328, 595, 642
NmuCI GTSAC 2 cut(s) 304, 565
NspI RCATGY 1 cut(s) 351
NspV TTCGAA 1 cut(s) 918
PaeI GCATGC 1 cut(s) 351
PagI TCATGA 1 cut(s) 790
PciSI GCTCTTC 1 cut(s) 496
PdmI GAANNNNTTC 1 cut(s) 807
PfeI GAWTC 4 cut(s) 111, 574, 787, 915
PkrI GCNGC 5 cut(s) 124, 242, 400, 476, 932
PleI GAGTC 2 cut(s) 174, 257
PpsI GAGTC 2 cut(s) 174, 257
Psp6I CCWGG 2 cut(s) 163, 657
PspEI GGTNACC 1 cut(s) 653
PspGI CCWGG 2 cut(s) 163, 657
PspN4I GGNNCC 3 cut(s) 328, 595, 642
PspPI GGNCC 1 cut(s) 593
PsrI GAACNNNNNNTAC 2 cut(s) 819, 851
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 2 cut(s) 199, 661
PvuII CAGCTG 1 cut(s) 125
RsaI GTAC 3 cut(s) 629, 740, 761
RsaNI GTAC 3 cut(s) 628, 739, 760
RseI CAYNNNNRTG 3 cut(s) 635, 689, 702
SapI GCTCTTC 1 cut(s) 496
SaqAI TTAA 4 cut(s) 425, 681, 854, 988
SatI GCNGC 5 cut(s) 123, 241, 399, 475, 931
Sau3AI GATC 3 cut(s) 199, 456, 661
Sau96I GGNCC 1 cut(s) 593
SchI GAGTC 2 cut(s) 174, 258
ScrFI CCNGG 2 cut(s) 165, 659
SduI GDGCHC 3 cut(s) 319, 699, 721
SfaNI GCATC 2 cut(s) 179, 384
SfcI CTRYAG 1 cut(s) 120
SfuI TTCGAA 1 cut(s) 918
SinI GGWCC 1 cut(s) 593
SmiMI CAYNNNNRTG 3 cut(s) 635, 689, 702
SphI GCATGC 1 cut(s) 351
Sse9I AATT 3 cut(s) 794, 803, 920
SsiI CCGC 2 cut(s) 477, 930
SspI AATATT 2 cut(s) 405, 613
SspMI CTAG 3 cut(s) 320, 332, 390
StyD4I CCNGG 2 cut(s) 163, 657
StyI CCWWGG 3 cut(s) 235, 331, 934
TaaI ACNGT 7 cut(s) 22, 106, 304, 367, 514, 571, 903
TaqI TCGA 4 cut(s) 97, 459, 785, 918
TasI AATT 3 cut(s) 794, 803, 920
TatI WGTACW 1 cut(s) 627
TauI GCSGC 1 cut(s) 933
TfiI GAWTC 4 cut(s) 111, 574, 787, 915
Tru1I TTAA 4 cut(s) 425, 681, 854, 988
Tru9I TTAA 4 cut(s) 425, 681, 854, 988
TscAI CASTG 2 cut(s) 574, 780
TseFI GTSAC 2 cut(s) 304, 565
TseI GCWGC 4 cut(s) 122, 240, 398, 474
Tsp45I GTSAC 2 cut(s) 304, 565
TspDTI ATGAA 5 cut(s) 453, 589, 779, 807, 816
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 2 cut(s) 574, 780
VneI GTGCAC 2 cut(s) 695, 717
VpaK11BI GGWCC 1 cut(s) 593
XapI RAATTY 2 cut(s) 803, 920
XceI RCATGY 1 cut(s) 351
XmaJI CCTAGG 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 807
XspI CTAG 3 cut(s) 320, 332, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.