Rh1BG193800

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000382
Physical Location & Seq
Forward (+)
31034193 .. 31040064
5872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG193800.1

Sequence Viewer

Length: 1182 bp
ATGGAAGGAGAAAAAGGTAGAGTGTGTGTAACGGGAGGTTCAGGGTTCATAGGGTCCTGGTTGATTTTGAGGCTTCTTGAGCATGGTTACTATGTCAATACCACTGTTAGATCAGACCCAGAACACAAGAAAGATTTAAGCTTCCTCACAGCTCTACCAGGAGCAGAAGAAAGGCTCCAAATATTCAACGCATACCTAAGCAATAACCCGGAAAGTTTCAATGCAGCCATCCAAGGATGCGTCGGAGTGTTCCATGTTGCTACTCCGGTTGACTTCCAAGACAAGGAACCTGAACCAGTAGTGACCAAACGATCAGTCGATGGAGCCCTTGGTATCCTCAAGGCGTGCCTATATGCAAAAACAGTGAAACGGGTTGTGTACACTTCTAGTGCCTCTGCTGTTGTATTTAACAACAAGGATGTGGAAGACATGGATGAGAGTTTTTGGAGTGACACAGATTACATTAAAGCTTTAAACCCGTATGGAGGCTCATACTCGATTTCGAAGACATTGACTGAAAGAGCAGTTCTTGAATTTTCGGAGAAAAATGGATTGGATGTTGTGACGGTAATTCCTTCTGTTGTTGTTGGCCCCTTCCTTTGTCCCAAGTTCCCTGGCTCTGTTCGAAGAACAGTGGCTCTGGTTTTGGGTAACAGGGATGAGTATCCTTTTCTTATCAATTTATCAGTGGTACATGTGGATGATGTCGCCAGAGCGCACATTTTCCTTTTCGAACATCATGATGCAAAAGGGAGATACAATTGCTCATCGAATGTCATAACAATTGAAGAAATGGCCAAGTTCCTTTCAGCCAAATTCCCCGAATTTCAAATACCCTCAGCAGAGTCATTGAAGGAAGTTAAAGGTCCTAAGATTCCTGGTCTGTCATCAAAGAAACTCTTAGATACGGGTTTCAAATTTAAGTATGGGGTTGATGAGATGTTTAGTGAGGCAATTCACTGCTGCAAAGAGAAGGGTTATCTGCCATCTAGCATTATAAGGTGTAGGAAAGCCTCCGCCTCGTCATCGTCAAGTCAGAGACAAAGAGAAGTCATCGCCTCATTGACGTCAAGCTCATGGACGAAGGGAAGCCTCCGCGTCATCGATGTCAAGGTCATAGACGAAGGGAAGCCTCTGCCTCGTCGTCAGGTCACGGGGAAGTCTCCACCTCGTTGTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00943 ko01110 map00943 map01110
Pfam Domains
Protein Families
Epimerase

Protein Analysis

393

Amino Acids

43.37

Weight (kDa)

8.58

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 8 - 255 1.6e-23 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 10 - 242 8.7e-17 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 10 - 268 1.3e-14 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 10 - 209 7.1e-12 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 998
AatII GACGTC 1 cut(s) 1070
AccII CGCG 1 cut(s) 1098
AciI CCGC 2 cut(s) 1017, 1096
AcoI YGGCCR 1 cut(s) 795
AcsI RAATTY 4 cut(s) 533, 815, 824, 917
AcyI GRCGYC 1 cut(s) 1067
AfaI GTAC 2 cut(s) 380, 693
AfiI CCNNNNNNNGG 2 cut(s) 283, 485
AflIII ACRYGT 1 cut(s) 694
AgsI TTSAA 7 cut(s) 187, 220, 533, 788, 830, 853, 916
AjnI CCWGG 4 cut(s) 56, 157, 613, 877
AjuI GAANNNNNNNTTGG 2 cut(s) 536, 568
AluBI AGCT 4 cut(s) 141, 152, 470, 1074
AluI AGCT 4 cut(s) 141, 152, 470, 1074
Alw26I GTCTC 2 cut(s) 1033, 1167
AoxI GGCC 2 cut(s) 589, 795
ApeKI GCWGC 2 cut(s) 224, 963
ApoI RAATTY 4 cut(s) 533, 815, 824, 917
ArsI GACNNNNNNTTYG 2 cut(s) 300, 332
AspLEI GCGC 1 cut(s) 718
AspS9I GGNCC 3 cut(s) 54, 590, 866
AsuC2I CCSGG 1 cut(s) 209
AsuII TTCGAA 3 cut(s) 503, 625, 732
AvaII GGWCC 2 cut(s) 54, 866
BalI TGGCCA 1 cut(s) 797
BanII GRGCYC 1 cut(s) 328
BbsI GAAGAC 2 cut(s) 432, 512
BbvCI CCTCAGC 1 cut(s) 838
BbvI GCAGC 2 cut(s) 236, 950
BccI CCATC 3 cut(s) 236, 314, 994
BciT130I CCWGG 4 cut(s) 58, 159, 615, 879
BciVI GTATCC 2 cut(s) 344, 675
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 2 cut(s) 1033, 1167
BfaI CTAG 2 cut(s) 387, 990
BfuI GTATCC 2 cut(s) 344, 675
BisI GCNGC 2 cut(s) 225, 964
BlsI GCNGC 2 cut(s) 226, 965
Bme1390I CCNGG 5 cut(s) 58, 159, 209, 615, 879
Bme18I GGWCC 2 cut(s) 54, 866
BmgT120I GGNCC 3 cut(s) 54, 590, 866
BmiI GGNNCC 5 cut(s) 55, 176, 288, 325, 592
BmrFI CCNGG 5 cut(s) 58, 159, 209, 615, 879
BmsI GCATC 2 cut(s) 227, 733
BpiI GAAGAC 2 cut(s) 432, 512
Bpu10I CCTNAGC 2 cut(s) 197, 838
Bpu14I TTCGAA 3 cut(s) 503, 625, 732
BpuEI CTTGAG 2 cut(s) 98, 323
BpuMI CCSGG 1 cut(s) 209
Bsa29I ATCGAT 1 cut(s) 1104
BsaBI GATNNNNATC 1 cut(s) 663
BsaHI GRCGYC 1 cut(s) 1067
BsaJI CCNNGG 3 cut(s) 232, 328, 613
BsaWI WCCGGW 1 cut(s) 265
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 485
Bse1I ACTGG 1 cut(s) 296
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 4 cut(s) 58, 159, 615, 879
BseCI ATCGAT 1 cut(s) 1104
BseDI CCNNGG 3 cut(s) 232, 328, 613
BseGI GGATG 7 cut(s) 228, 242, 424, 439, 562, 664, 706
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 2 cut(s) 283, 485
BseMII CTCAG 1 cut(s) 852
BseNI ACTGG 1 cut(s) 296
BseXI GCAGC 2 cut(s) 236, 950
Bsh1236I CGCG 1 cut(s) 1098
BshFI GGCC 2 cut(s) 591, 797
BshVI ATCGAT 1 cut(s) 1104
BsiSI CCGG 2 cut(s) 209, 266
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 2 cut(s) 283, 485
BsmAI GTCTC 2 cut(s) 1033, 1167
BsmFI GGGAC 1 cut(s) 588
BsnI GGCC 2 cut(s) 591, 797
Bsp119I TTCGAA 3 cut(s) 503, 625, 732
Bsp1286I GDGCHC 1 cut(s) 328
Bsp1407I TGTACA 1 cut(s) 378
Bsp143I GATC 2 cut(s) 110, 311
BspACI CCGC 2 cut(s) 1017, 1096
BspANI GGCC 2 cut(s) 591, 797
BspCNI CTCAG 1 cut(s) 851
BspDI ATCGAT 1 cut(s) 1104
BspFNI CGCG 1 cut(s) 1098
BspHI TCATGA 1 cut(s) 739
BspLI GGNNCC 5 cut(s) 55, 176, 288, 325, 592
BspT104I TTCGAA 3 cut(s) 503, 625, 732
BsrGI TGTACA 1 cut(s) 378
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 3 cut(s) 232, 328, 613
BssMI GATC 2 cut(s) 110, 311
BssNI GRCGYC 1 cut(s) 1067
BssT1I CCWWGG 2 cut(s) 232, 328
Bst2UI CCWGG 4 cut(s) 58, 159, 615, 879
Bst4CI ACNGT 4 cut(s) 106, 364, 568, 634
BstACI GRCGYC 1 cut(s) 1067
BstAUI TGTACA 1 cut(s) 378
BstBI TTCGAA 3 cut(s) 503, 625, 732
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 4 cut(s) 197, 838, 870, 901
BstF5I GGATG 7 cut(s) 228, 242, 424, 439, 562, 664, 706
BstFNI CGCG 1 cut(s) 1098
BstHHI GCGC 1 cut(s) 718
BstKTI GATC 2 cut(s) 113, 314
BstMAI GTCTC 2 cut(s) 1033, 1167
BstMBI GATC 2 cut(s) 110, 311
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 4 cut(s) 58, 159, 615, 879
BstNSI RCATGY 1 cut(s) 698
BstSCI CCNGG 5 cut(s) 56, 157, 207, 613, 877
BstUI CGCG 1 cut(s) 1098
BstV1I GCAGC 2 cut(s) 236, 950
BstV2I GAAGAC 2 cut(s) 432, 512
Bsu15I ATCGAT 1 cut(s) 1104
BsuI GTATCC 2 cut(s) 344, 675
BsuRI GGCC 2 cut(s) 591, 797
BsuTUI ATCGAT 1 cut(s) 1104
BtgZI GCGATG 1 cut(s) 1039
BtsCI GGATG 7 cut(s) 228, 242, 424, 439, 562, 664, 706
BtsI GCAGTG 1 cut(s) 958
BtsIMutI CAGTG 5 cut(s) 102, 369, 639, 693, 958
Cac8I GCNNGC 1 cut(s) 346
CciI TCATGA 1 cut(s) 739
CfoI GCGC 1 cut(s) 718
Cfr13I GGNCC 3 cut(s) 54, 590, 866
ClaI ATCGAT 1 cut(s) 1104
CseI GACGC 2 cut(s) 229, 1087
Csp6I GTAC 2 cut(s) 379, 692
CviAII CATG 6 cut(s) 83, 254, 430, 695, 740, 1077
CviQI GTAC 2 cut(s) 379, 692
DdeI CTNAG 4 cut(s) 197, 838, 870, 901
DpnI GATC 2 cut(s) 112, 313
DpnII GATC 2 cut(s) 110, 311
DraI TTTAAA 1 cut(s) 474
EaeI YGGCCR 1 cut(s) 795
EciI GGCGGA 1 cut(s) 1006
Eco130I CCWWGG 2 cut(s) 232, 328
Eco24I GRGCYC 1 cut(s) 328
Eco47I GGWCC 2 cut(s) 54, 866
EcoO109I RGGNCCY 2 cut(s) 54, 866
EcoRII CCWGG 4 cut(s) 56, 157, 613, 877
EcoT14I CCWWGG 2 cut(s) 232, 328
EcoT38I GRGCYC 1 cut(s) 328
ErhI CCWWGG 2 cut(s) 232, 328
FaeI CATG 6 cut(s) 86, 257, 433, 698, 743, 1080
FalI AAGNNNNNCTT 2 cut(s) 884, 916
FaqI GGGAC 1 cut(s) 588
FatI CATG 6 cut(s) 82, 253, 429, 694, 739, 1076
Fnu4HI GCNGC 2 cut(s) 225, 964
FokI GGATG 7 cut(s) 215, 249, 431, 446, 569, 671, 713
FriOI GRGCYC 1 cut(s) 328
Fsp4HI GCNGC 2 cut(s) 225, 964
FspBI CTAG 2 cut(s) 387, 990
GlaI GCGC 1 cut(s) 717
GluI GCNGC 2 cut(s) 225, 964
HaeIII GGCC 2 cut(s) 591, 797
HapII CCGG 2 cut(s) 209, 266
HgaI GACGC 2 cut(s) 229, 1087
HhaI GCGC 1 cut(s) 718
Hin1I GRCGYC 1 cut(s) 1067
Hin1II CATG 6 cut(s) 86, 257, 433, 698, 743, 1080
Hin6I GCGC 1 cut(s) 716
HinP1I GCGC 1 cut(s) 716
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 2 cut(s) 139, 468
HinfI GANTC 2 cut(s) 845, 874
HpaII CCGG 2 cut(s) 209, 266
Hpy166II GTNNAC 3 cut(s) 271, 379, 381
Hpy188I TCNGA 4 cut(s) 115, 245, 541, 1038
Hpy188III TCNNGA 3 cut(s) 77, 530, 740
Hpy8I GTNNAC 3 cut(s) 271, 379, 381
Hpy99I CGWCG 2 cut(s) 245, 1146
HpyAV CCTTC 6 cut(s) 585, 604, 847, 967, 1078, 1118
HpyCH4III ACNGT 4 cut(s) 106, 364, 568, 634
HpyCH4IV ACGT 1 cut(s) 1067
HpyCH4V TGCA 4 cut(s) 224, 356, 746, 966
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 4 cut(s) 197, 838, 870, 901
HpySE526I ACGT 1 cut(s) 1067
Hsp92I GRCGYC 1 cut(s) 1067
Hsp92II CATG 6 cut(s) 86, 257, 433, 698, 743, 1080
HspAI GCGC 1 cut(s) 716
Kzo9I GATC 2 cut(s) 110, 311
LmnI GCTCC 3 cut(s) 161, 180, 323
Lsp1109I GCAGC 2 cut(s) 236, 950
LweI GCATC 2 cut(s) 227, 733
MaeI CTAG 2 cut(s) 387, 990
MaeII ACGT 1 cut(s) 1067
MaeIII GTNAC 7 cut(s) 28, 86, 301, 449, 562, 650, 1150
MalI GATC 2 cut(s) 112, 313
MboI GATC 2 cut(s) 110, 311
MboII GAAGA 5 cut(s) 179, 437, 517, 639, 800
MfeI CAATTG 2 cut(s) 760, 783
MhlI GDGCHC 1 cut(s) 328
MlsI TGGCCA 1 cut(s) 797
MluCI AATT 9 cut(s) 533, 570, 679, 760, 783, 815, 824, 917, 954
MluNI TGGCCA 1 cut(s) 797
MlyI GAGTC 1 cut(s) 854
MmeI TCCRAC 1 cut(s) 223
Mox20I TGGCCA 1 cut(s) 797
MscI TGGCCA 1 cut(s) 797
MseI TTAA 6 cut(s) 137, 408, 465, 473, 861, 921
MslI CAYNNNNRTG 2 cut(s) 699, 741
Msp20I TGGCCA 1 cut(s) 797
MspI CCGG 2 cut(s) 209, 266
MspR9I CCNGG 5 cut(s) 58, 159, 209, 615, 879
MunI CAATTG 2 cut(s) 760, 783
MvaI CCWGG 4 cut(s) 58, 159, 615, 879
MvnI CGCG 1 cut(s) 1098
MwoI GCNNNNNNNGC 1 cut(s) 79
NciI CCSGG 1 cut(s) 209
NdeII GATC 2 cut(s) 110, 311
NlaIII CATG 6 cut(s) 86, 257, 433, 698, 743, 1080
NlaIV GGNNCC 5 cut(s) 55, 176, 288, 325, 592
NmuCI GTSAC 4 cut(s) 301, 449, 562, 1150
NspI RCATGY 1 cut(s) 698
NspV TTCGAA 3 cut(s) 503, 625, 732
PagI TCATGA 1 cut(s) 739
PciI ACATGT 1 cut(s) 694
PfeI GAWTC 1 cut(s) 874
PkrI GCNGC 2 cut(s) 226, 965
PleI GAGTC 1 cut(s) 853
PpsI GAGTC 1 cut(s) 853
PpuMI RGGWCCY 2 cut(s) 54, 866
PscI ACATGT 1 cut(s) 694
PsiI TTATAA 1 cut(s) 998
Psp5II RGGWCCY 2 cut(s) 54, 866
Psp6I CCWGG 4 cut(s) 56, 157, 613, 877
PspGI CCWGG 4 cut(s) 56, 157, 613, 877
PspN4I GGNNCC 5 cut(s) 55, 176, 288, 325, 592
PspPI GGNCC 3 cut(s) 54, 590, 866
PspPPI RGGWCCY 2 cut(s) 54, 866
RsaI GTAC 2 cut(s) 380, 693
RsaNI GTAC 2 cut(s) 379, 692
RseI CAYNNNNRTG 2 cut(s) 699, 741
SaqAI TTAA 6 cut(s) 137, 408, 465, 473, 861, 921
SatI GCNGC 2 cut(s) 225, 964
Sau3AI GATC 2 cut(s) 110, 311
Sau96I GGNCC 3 cut(s) 54, 590, 866
SchI GAGTC 1 cut(s) 854
ScrFI CCNGG 5 cut(s) 58, 159, 209, 615, 879
SduI GDGCHC 1 cut(s) 328
SfaNI GCATC 2 cut(s) 227, 733
SfuI TTCGAA 3 cut(s) 503, 625, 732
SinI GGWCC 2 cut(s) 54, 866
SmiMI CAYNNNNRTG 2 cut(s) 699, 741
SmlI CTYRAG 2 cut(s) 77, 338
SmoI CTYRAG 2 cut(s) 77, 338
Sse9I AATT 9 cut(s) 533, 570, 679, 760, 783, 815, 824, 917, 954
SsiI CCGC 2 cut(s) 1017, 1096
SspI AATATT 1 cut(s) 183
SspMI CTAG 2 cut(s) 387, 990
StyD4I CCNGG 5 cut(s) 56, 157, 207, 613, 877
StyI CCWWGG 2 cut(s) 232, 328
TaaI ACNGT 4 cut(s) 106, 364, 568, 634
TaiI ACGT 1 cut(s) 1070
TaqI TCGA 7 cut(s) 318, 497, 503, 625, 732, 770, 1104
TasI AATT 9 cut(s) 533, 570, 679, 760, 783, 815, 824, 917, 954
TatI WGTACW 1 cut(s) 378
TfiI GAWTC 1 cut(s) 874
Tru1I TTAA 6 cut(s) 137, 408, 465, 473, 861, 921
Tru9I TTAA 6 cut(s) 137, 408, 465, 473, 861, 921
TscAI CASTG 5 cut(s) 109, 369, 639, 693, 965
TseFI GTSAC 4 cut(s) 301, 449, 562, 1150
TseI GCWGC 2 cut(s) 224, 963
Tsp45I GTSAC 4 cut(s) 301, 449, 562, 1150
TspDTI ATGAA 1 cut(s) 37
TspRI CASTG 5 cut(s) 109, 369, 639, 693, 965
VpaK11BI GGWCC 2 cut(s) 54, 866
XapI RAATTY 4 cut(s) 533, 815, 824, 917
XceI RCATGY 1 cut(s) 698
XspI CTAG 2 cut(s) 387, 990
ZraI GACGTC 1 cut(s) 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.