Rh5AG528000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000382
Physical Location & Seq
Reverse (-)
90546362 .. 90546583
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG528000.1

Sequence Viewer

Length: 222 bp
ATGAATGATCCTGACGATTTGCTCGAGAATGCGAATATTGTTGCTCTCGTGACTTCAGTCGCCAGCATTGCCGCCGCCGCCGAGAGCCTCCACGAGCAGGGTAACAAACCCTTCGCAATTGGCGAGAAACTTCCTGTTCTCTTCCAACTCCTTGGCGAACCGAGCAATCTTCGCCAACGAATCCATAGAGGAGGAGCTGTGGCAGTCCATCTATTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.77

Weight (kDa)

5.4

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 72, 75, 78
AclWI GGATC 1 cut(s) 2
AcuI CTGAAG 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 1 cut(s) 217
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
AlwI GGATC 1 cut(s) 2
Ama87I CYCGRG 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 23
BauI CACGAG 2 cut(s) 47, 92
BccI CCATC 1 cut(s) 216
BisI GCNGC 3 cut(s) 72, 75, 78
BlsI GCNGC 3 cut(s) 73, 76, 79
BmeT110I CYCGRG 1 cut(s) 23
BoxI GACNNNNGTC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 66
BseRI GAGGAG 2 cut(s) 204, 207
BsiHKCI CYCGRG 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 97
BsmI GAATGC 1 cut(s) 34
BsoBI CYCGRG 1 cut(s) 23
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 3 cut(s) 72, 75, 78
BspPI GGATC 1 cut(s) 2
BsrDI GCAATG 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 1 cut(s) 7
BssSI CACGAG 2 cut(s) 47, 92
BssT1I CCWWGG 1 cut(s) 151
Bst2BI CACGAG 2 cut(s) 47, 92
Bst6I CTCTTC 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 64
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 4 cut(s) 68, 77, 162, 171
BstPAI GACNNNNGTC 1 cut(s) 56
BstXI CCANNNNNNTGG 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 64
CviJI RGCY 2 cut(s) 87, 197
CviKI_1 RGCY 2 cut(s) 87, 197
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 151
FaiI YATR 1 cut(s) 186
Fnu4HI GCNGC 3 cut(s) 72, 75, 78
Fsp4HI GCNGC 3 cut(s) 72, 75, 78
GluI GCNGC 3 cut(s) 72, 75, 78
HinfI GANTC 1 cut(s) 180
Hpy188III TCNNGA 3 cut(s) 11, 25, 49
HpyAV CCTTC 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 77, 162, 171
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 4 cut(s) 24, 76, 83, 147
MaeIII GTNAC 2 cut(s) 49, 101
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 2 cut(s) 133, 161
MfeI CAATTG 1 cut(s) 117
MluCI AATT 2 cut(s) 117, 217
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 3 cut(s) 98, 182, 185
MunI CAATTG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 34
MwoI GCNNNNNNNGC 4 cut(s) 68, 77, 162, 171
NdeII GATC 1 cut(s) 7
NmeAIII GCCGAG 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 49
PaeR7I CTCGAG 1 cut(s) 23
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 120
PctI GAATGC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 180
PkrI GCNGC 3 cut(s) 73, 76, 79
PshAI GACNNNNGTC 1 cut(s) 56
SatI GCNGC 3 cut(s) 72, 75, 78
Sau3AI GATC 1 cut(s) 7
SetI ASST 1 cut(s) 199
Sfr274I CTCGAG 1 cut(s) 23
SlaI CTCGAG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 2 cut(s) 117, 217
SsiI CCGC 3 cut(s) 72, 75, 78
SspI AATATT 1 cut(s) 37
StyI CCWWGG 1 cut(s) 151
TaqI TCGA 1 cut(s) 24
TasI AATT 2 cut(s) 117, 217
TauI GCSGC 3 cut(s) 74, 77, 80
TfiI GAWTC 1 cut(s) 180
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 17
XhoI CTCGAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.