Rorug01G0211200

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
29858826 .. 29859239
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0211200.1

Sequence Viewer

Length: 414 bp
ATGAGCATACAAAGAACCTCAACATGTCTCCCTCCTGCAACCCCTCTTTGGAAATATGATGTCTTCCTGAGTTTTAGAGGTGACGACACTTGGAAGGGCTTCACAGACCACTTATATAGTGCATTGGAACATCAAGGAATAGTAGCTTTCAAGGATGATCCTGAGCTTGAAAAGGGGAAAGCTATTTCTCCACAACTTTTGACTGCAATTGAAGAATTGAGATATGCTCTCATTGTTGTCTCACGAAATTATACATCGTCAACATGGTGTCTAGATGAACTCTTAAGGATTCTTGAATGCATGGAAGGAAGAGAAACAGTGATGCCAATTTTATATGATGTCGATCCCTGTGATGTACAAAAACAAACAGGAAGTTTCGCTGAAGCCTTCACGAGGCATGAAGAAAAGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

137

Amino Acids

15.71

Weight (kDa)

4.81

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 18 - 136 8.7e-39 TIR domain
TIR_2 PF13676 21 - 118 5e-15 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 152, 338
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 1 cut(s) 357
AfiI CCNNNNNNNGG 2 cut(s) 48, 393
AflII CTTAAG 1 cut(s) 283
AflIII ACRYGT 1 cut(s) 23
AgsI TTSAA 4 cut(s) 151, 170, 212, 296
AluBI AGCT 3 cut(s) 146, 166, 182
AluI AGCT 3 cut(s) 146, 166, 182
Alw26I GTCTC 2 cut(s) 32, 244
AlwI GGATC 2 cut(s) 152, 338
Asp700I GAANNNNTTC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 92
BauI CACGAG 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 55
BcoDI GTCTC 2 cut(s) 32, 244
BfaI CTAG 1 cut(s) 272
BfrI CTTAAG 1 cut(s) 283
BmsI GCATC 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 55
BplI GAGNNNNNCTC 2 cut(s) 211, 243
Bpu10I CCTNAGC 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 342
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 393
Bse8I GATNNNNATC 1 cut(s) 342
BseGI GGATG 1 cut(s) 160
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 2 cut(s) 48, 393
BseMII CTCAG 2 cut(s) 59, 153
BslI CCNNNNNNNGG 2 cut(s) 48, 393
BsmAI GTCTC 2 cut(s) 32, 244
BsmI GAATGC 1 cut(s) 302
Bsp1407I TGTACA 1 cut(s) 355
Bsp143I GATC 2 cut(s) 157, 343
BspCNI CTCAG 2 cut(s) 60, 154
BspPI GGATC 2 cut(s) 152, 338
BspTI CTTAAG 1 cut(s) 283
BsrGI TGTACA 1 cut(s) 355
BssMI GATC 2 cut(s) 157, 343
BssSI CACGAG 1 cut(s) 391
Bst2BI CACGAG 1 cut(s) 391
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 304
BstAFI CTTAAG 1 cut(s) 283
BstAUI TGTACA 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 68, 162
BstENI CCTNNNNNAGG 1 cut(s) 391
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 2 cut(s) 160, 346
BstMAI GTCTC 2 cut(s) 32, 244
BstMBI GATC 2 cut(s) 157, 343
BstNSI RCATGY 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 55
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 324
Csp6I GTAC 1 cut(s) 356
CspCI CAANNNNNGTGG 2 cut(s) 180, 215
CviAII CATG 4 cut(s) 24, 264, 301, 398
CviJI RGCY 5 cut(s) 99, 146, 166, 182, 386
CviKI_1 RGCY 5 cut(s) 99, 146, 166, 182, 386
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 2 cut(s) 68, 162
DpnI GATC 2 cut(s) 159, 345
DpnII GATC 2 cut(s) 157, 343
Eam1104I CTCTTC 1 cut(s) 304
EarI CTCTTC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 402
EcoNI CCTNNNNNAGG 1 cut(s) 391
EcoT22I ATGCAT 1 cut(s) 302
FaeI CATG 4 cut(s) 27, 267, 304, 401
FatI CATG 4 cut(s) 23, 263, 300, 397
FokI GGATG 1 cut(s) 167
FspBI CTAG 1 cut(s) 272
Hin1II CATG 4 cut(s) 27, 267, 304, 401
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HinfI GANTC 1 cut(s) 289
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 261
Hpy188III TCNNGA 6 cut(s) 67, 161, 243, 272, 293, 391
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 3 cut(s) 88, 299, 397
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 4 cut(s) 38, 122, 206, 300
HpyF3I CTNAG 2 cut(s) 68, 162
Hsp92II CATG 4 cut(s) 27, 267, 304, 401
Kzo9I GATC 2 cut(s) 157, 343
LpnPI CCDG 5 cut(s) 48, 80, 174, 354, 361
LweI GCATC 1 cut(s) 312
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 1 cut(s) 80
MalI GATC 2 cut(s) 159, 345
MboI GATC 2 cut(s) 157, 343
MboII GAAGA 4 cut(s) 55, 224, 321, 413
MfeI CAATTG 1 cut(s) 207
MluCI AATT 4 cut(s) 207, 215, 247, 327
MnlI CCTC 5 cut(s) 28, 42, 54, 71, 387
Mph1103I ATGCAT 1 cut(s) 302
MroXI GAANNNNTTC 1 cut(s) 98
MseI TTAA 1 cut(s) 284
MspCI CTTAAG 1 cut(s) 283
MunI CAATTG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 302
NdeII GATC 2 cut(s) 157, 343
NlaIII CATG 4 cut(s) 27, 267, 304, 401
NmuCI GTSAC 1 cut(s) 80
NsiI ATGCAT 1 cut(s) 302
NspI RCATGY 1 cut(s) 27
PciI ACATGT 1 cut(s) 23
PctI GAATGC 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 289
PscI ACATGT 1 cut(s) 23
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
SaqAI TTAA 1 cut(s) 284
Sau3AI GATC 2 cut(s) 157, 343
SetI ASST 6 cut(s) 20, 82, 148, 168, 184, 411
SfaNI GCATC 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 4 cut(s) 207, 215, 247, 327
SspMI CTAG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 1 cut(s) 342
TasI AATT 4 cut(s) 207, 215, 247, 327
TatI WGTACW 1 cut(s) 355
TfiI GAWTC 1 cut(s) 289
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 291, 414
TspRI CASTG 1 cut(s) 324
Vha464I CTTAAG 1 cut(s) 283
XagI CCTNNNNNAGG 1 cut(s) 391
XbaI TCTAGA 1 cut(s) 271
XceI RCATGY 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 1 cut(s) 272
Zsp2I ATGCAT 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.