Rh2BG259100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000382
Physical Location & Seq
Forward (+)
27353978 .. 27354166
189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG259100.1

Sequence Viewer

Length: 189 bp
ATGAATGATCCTGACGATTTGCTTGAGAATGCGAATGTTGTTGCTCCCGTGACCTCCGTCACTGGCCTTGCCGCCGCCAAGAGCCTCGACGAGCAGCGCCACAAACCCATCGCACTTGGCGAGAAAGTTCATGTTCTCTTCCGACTCCTTGGCGAACCGCCCAATCTTCACCAACGAATCCACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

6.84

Weight (kDa)

6.38

Isoelectric Point (pI)

23.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 72, 75, 158
AclWI GGATC 1 cut(s) 2
AlwI GGATC 1 cut(s) 2
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 94
AspLEI GCGC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 161
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 116
BfoI RGCGCY 1 cut(s) 100
BisI GCNGC 3 cut(s) 72, 75, 95
BlsI GCNGC 3 cut(s) 73, 76, 96
BoxI GACNNNNGTC 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 148
BseNI ACTGG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 106
BshFI GGCC 1 cut(s) 66
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 1 cut(s) 66
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 3 cut(s) 72, 75, 158
BspANI GGCC 1 cut(s) 66
BspPI GGATC 1 cut(s) 2
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 1 cut(s) 7
BssT1I CCWWGG 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstPAI GACNNNNGTC 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 106
BsuRI GGCC 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 60
CfoI GCGC 1 cut(s) 99
CviAII CATG 1 cut(s) 131
CviJI RGCY 2 cut(s) 66, 84
CviKI_1 RGCY 2 cut(s) 66, 84
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 1 cut(s) 134
FaiI YATR 1 cut(s) 132
FatI CATG 1 cut(s) 130
Fnu4HI GCNGC 3 cut(s) 72, 75, 95
Fsp4HI GCNGC 3 cut(s) 72, 75, 95
GlaI GCGC 1 cut(s) 98
GluI GCNGC 3 cut(s) 72, 75, 95
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 1 cut(s) 66
HhaI GCGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 134
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 2 cut(s) 144, 177
HphI GGTGA 1 cut(s) 161
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 1 cut(s) 11
Hpy99I CGWCG 1 cut(s) 92
Hsp92II CATG 1 cut(s) 134
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 2 cut(s) 24, 48
Lsp1109I GCAGC 1 cut(s) 106
MaeIII GTNAC 2 cut(s) 49, 58
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 2 cut(s) 130, 158
MlyI GAGTC 1 cut(s) 138
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 2 cut(s) 64, 95
Mva1269I GAATGC 1 cut(s) 34
NdeII GATC 1 cut(s) 7
NlaIII CATG 1 cut(s) 134
NmuCI GTSAC 2 cut(s) 49, 58
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PctI GAATGC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 3 cut(s) 73, 76, 96
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PshAI GACNNNNGTC 1 cut(s) 56
SatI GCNGC 3 cut(s) 72, 75, 95
Sau3AI GATC 1 cut(s) 7
SchI GAGTC 1 cut(s) 138
SetI ASST 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SsiI CCGC 3 cut(s) 72, 75, 158
StyI CCWWGG 1 cut(s) 148
TaqI TCGA 1 cut(s) 87
TauI GCSGC 2 cut(s) 74, 77
TfiI GAWTC 1 cut(s) 177
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 2 cut(s) 49, 58
TseI GCWGC 1 cut(s) 94
Tsp45I GTSAC 2 cut(s) 49, 58
TspDTI ATGAA 2 cut(s) 17, 119
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.