Rmu_ssc0000083.1_g000013

Male sterility protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000083.1
Physical Location & Seq
Forward (+)
42541 .. 44347
1807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000083.1_g000013.1.cds

Sequence Viewer

Length: 774 bp
atggaagaagtcagaggcacagtttgtgtaactggtggaacaggatatatagcctcatggctgattctgaggctgcttcagcatggttactcggttcgagccaccattagatccaaccctgctgaaggcaagagagatatcagctacctgacaagccttccaggagcacaagagaaactccaaatcttccatgcagatctcaacaaccccgaaaccttcaacgacgccatccaaggctgcaccggtgtcttccaccttgctcaccccatggacgttgaaggcaaagaacccgaggaaaccgttaccaaacgagccctggaaggaacactaggcattttgaaggcatgcctatgttgcaagaccgtgagacgagtggtttacacatccagtctggccacaatattgtacaacagcaagcgtcttgaagaaactgatgaaaacacatggagtgaggttgatgtatgcagaagtaacaagcttgtgagctcttcttacttggtttccaagactctggtggagaggtcagccctggaatttgcagtgaggaatggtttggatcttgtcactgtggttttgcctatagtagttggacccttcgtttgtccaaatgttcctgcttccgtgtacatgggcatggctcccatttttggtgaccaagagcaatgtaaatatcttgttcgcacatatatggtgcacatagatgatgtggcgagtgcccatatcttccttcttgaacatgctaatgcaaaagggaggtacatgcctagacgctag

Protein Analysis

257

Amino Acids

28.51

Weight (kDa)

6.66

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 105, 564
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 1 cut(s) 533
AcuI CTGAAG 2 cut(s) 62, 144
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 3 cut(s) 407, 626, 758
AfiI CCNNNNNNNGG 2 cut(s) 125, 647
AgeI ACCGGT 1 cut(s) 242
AgsI TTSAA 5 cut(s) 220, 278, 340, 425, 734
AjnI CCWGG 3 cut(s) 160, 315, 528
AluBI AGCT 3 cut(s) 144, 478, 486
AluI AGCT 3 cut(s) 144, 478, 486
Alw21I GWGCWC 3 cut(s) 169, 488, 696
Alw26I GTCTC 1 cut(s) 361
Alw44I GTGCAC 1 cut(s) 692
AlwI GGATC 2 cut(s) 105, 564
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 1 cut(s) 393
ApaLI GTGCAC 1 cut(s) 692
ApeKI GCWGC 2 cut(s) 73, 237
ApoI RAATTY 1 cut(s) 533
ArsI GACNNNNNNTTYG 2 cut(s) 582, 614
AsiGI ACCGGT 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 590
AsuHPI GGTGA 2 cut(s) 254, 662
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 1 cut(s) 590
BaeGI GKGCMC 2 cut(s) 696, 718
BalI TGGCCA 1 cut(s) 395
BanII GRGCYC 2 cut(s) 316, 488
BbsI GAAGAC 1 cut(s) 241
Bbv12I GWGCWC 3 cut(s) 169, 488, 696
BbvI GCAGC 2 cut(s) 60, 224
BccI CCATC 1 cut(s) 236
BciT130I CCWGG 3 cut(s) 162, 317, 530
BcoDI GTCTC 1 cut(s) 361
BfaI CTAG 3 cut(s) 329, 765, 772
BfmI CTRYAG 1 cut(s) 579
BglII AGATCT 1 cut(s) 196
BisI GCNGC 2 cut(s) 74, 238
BlsI GCNGC 2 cut(s) 75, 239
Bme1390I CCNGG 3 cut(s) 162, 317, 530
Bme18I GGWCC 1 cut(s) 590
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 2 cut(s) 592, 639
BmrFI CCNGG 3 cut(s) 162, 317, 530
BpiI GAAGAC 1 cut(s) 241
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 5 cut(s) 232, 267, 291, 315, 528
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 647
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 37, 387
Bse3DI GCAATG 1 cut(s) 668
BseBI CCWGG 3 cut(s) 162, 317, 530
BseDI CCNNGG 5 cut(s) 232, 267, 291, 315, 528
BseGI GGATG 2 cut(s) 228, 383
BseLI CCNNNNNNNGG 2 cut(s) 125, 647
BseMI GCAATG 1 cut(s) 668
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 2 cut(s) 37, 387
BseSI GKGCMC 2 cut(s) 696, 718
BseXI GCAGC 2 cut(s) 60, 224
BsgI GTGCAG 1 cut(s) 223
BshFI GGCC 1 cut(s) 395
BshTI ACCGGT 1 cut(s) 242
BsiHKAI GWGCWC 3 cut(s) 169, 488, 696
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 125, 647
BsmAI GTCTC 1 cut(s) 361
BsmBI CGTCTC 1 cut(s) 361
BsnI GGCC 1 cut(s) 395
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 5 cut(s) 169, 316, 488, 696, 718
Bsp1407I TGTACA 2 cut(s) 405, 624
Bsp143I GATC 3 cut(s) 110, 196, 556
Bsp19I CCATGG 1 cut(s) 267
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 592, 639
BspPI GGATC 2 cut(s) 105, 564
BspQI GCTCTTC 1 cut(s) 493
BsrDI GCAATG 1 cut(s) 668
BsrFI RCCGGY 1 cut(s) 242
BsrGI TGTACA 2 cut(s) 405, 624
BsrI ACTGG 2 cut(s) 37, 387
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 5 cut(s) 232, 267, 291, 315, 528
BssMI GATC 3 cut(s) 110, 196, 556
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 2 cut(s) 232, 267
Bst2UI CCWGG 3 cut(s) 162, 317, 530
Bst4CI ACNGT 4 cut(s) 22, 301, 364, 568
Bst6I CTCTTC 1 cut(s) 493
BstACI GRCGYC 1 cut(s) 225
BstAUI TGTACA 2 cut(s) 405, 624
BstC8I GCNNGC 2 cut(s) 346, 416
BstDEI CTNAG 1 cut(s) 68
BstDSI CCRYGG 1 cut(s) 267
BstEII GGTNACC 1 cut(s) 650
BstENI CCTNNNNNAGG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 228, 383
BstKTI GATC 3 cut(s) 113, 199, 559
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 3 cut(s) 110, 196, 556
BstMWI GCNNNNNNNGC 2 cut(s) 79, 354
BstNI CCWGG 3 cut(s) 162, 317, 530
BstNSI RCATGY 3 cut(s) 348, 740, 763
BstPI GGTNACC 1 cut(s) 650
BstSCI CCNGG 3 cut(s) 160, 315, 528
BstSFI CTRYAG 1 cut(s) 579
BstSLI GKGCMC 2 cut(s) 696, 718
BstV1I GCAGC 2 cut(s) 60, 224
BstV2I GAAGAC 1 cut(s) 241
BstX2I RGATCY 3 cut(s) 110, 196, 556
BstXI CCANNNNNNTGG 1 cut(s) 511
BstYI RGATCY 3 cut(s) 110, 196, 556
BsuRI GGCC 1 cut(s) 395
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 2 cut(s) 228, 383
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 2 cut(s) 546, 564
Cac8I GCNNGC 2 cut(s) 346, 416
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 590
CseI GACGC 2 cut(s) 233, 407
Csp6I GTAC 3 cut(s) 406, 625, 757
CspAI ACCGGT 1 cut(s) 242
CviQI GTAC 3 cut(s) 406, 625, 757
DdeI CTNAG 1 cut(s) 68
DpnI GATC 3 cut(s) 112, 198, 558
DpnII GATC 3 cut(s) 110, 196, 556
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 493
EarI CTCTTC 1 cut(s) 493
Ecl136II GAGCTC 1 cut(s) 486
Eco130I CCWWGG 2 cut(s) 232, 267
Eco24I GRGCYC 2 cut(s) 316, 488
Eco32I GATATC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 590
Eco53kI GAGCTC 1 cut(s) 486
Eco57I CTGAAG 2 cut(s) 62, 144
Eco88I CYCGRG 1 cut(s) 290
Eco91I GGTNACC 1 cut(s) 650
EcoICRI GAGCTC 1 cut(s) 486
EcoNI CCTNNNNNAGG 1 cut(s) 123
EcoO65I GGTNACC 1 cut(s) 650
EcoRII CCWGG 3 cut(s) 160, 315, 528
EcoRV GATATC 1 cut(s) 139
EcoT14I CCWWGG 2 cut(s) 232, 267
EcoT38I GRGCYC 2 cut(s) 316, 488
ErhI CCWWGG 2 cut(s) 232, 267
Esp3I CGTCTC 1 cut(s) 361
Fnu4HI GCNGC 2 cut(s) 74, 238
FokI GGATG 2 cut(s) 215, 370
FriOI GRGCYC 2 cut(s) 316, 488
Fsp4HI GCNGC 2 cut(s) 74, 238
FspBI CTAG 3 cut(s) 329, 765, 772
GluI GCNGC 2 cut(s) 74, 238
HaeIII GGCC 1 cut(s) 395
HapII CCGG 1 cut(s) 243
HgaI GACGC 2 cut(s) 233, 407
Hin1I GRCGYC 1 cut(s) 225
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 2 cut(s) 64, 508
HpaII CCGG 1 cut(s) 243
HphI GGTGA 2 cut(s) 254, 662
Hpy166II GTNNAC 3 cut(s) 379, 625, 694
Hpy188I TCNGA 2 cut(s) 14, 69
Hpy188III TCNNGA 2 cut(s) 422, 731
Hpy8I GTNNAC 3 cut(s) 379, 625, 694
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 8 cut(s) 119, 167, 226, 272, 314, 334, 604, 737
HpyCH4III ACNGT 4 cut(s) 22, 301, 364, 568
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 7 cut(s) 194, 240, 357, 465, 539, 694, 746
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 354
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 273
Hsp92I GRCGYC 1 cut(s) 225
Kzo9I GATC 3 cut(s) 110, 196, 556
LguI GCTCTTC 1 cut(s) 493
LmnI GCTCC 2 cut(s) 164, 643
Lsp1109I GCAGC 2 cut(s) 60, 224
MaeI CTAG 3 cut(s) 329, 765, 772
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 6 cut(s) 28, 86, 301, 470, 562, 650
MalI GATC 3 cut(s) 112, 198, 558
MboI GATC 3 cut(s) 110, 196, 556
MboII GAAGA 6 cut(s) 17, 178, 241, 437, 480, 715
MflI RGATCY 3 cut(s) 110, 196, 556
MhlI GDGCHC 5 cut(s) 169, 316, 488, 696, 718
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 1 cut(s) 533
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 1 cut(s) 502
MmeI TCCRAC 2 cut(s) 138, 568
MnlI CCTC 8 cut(s) 8, 63, 64, 286, 445, 513, 537, 747
Mox20I TGGCCA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 395
MslI CAYNNNNRTG 5 cut(s) 349, 632, 686, 699, 741
Msp20I TGGCCA 1 cut(s) 395
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 3 cut(s) 162, 317, 530
MvaI CCWGG 3 cut(s) 162, 317, 530
MwoI GCNNNNNNNGC 2 cut(s) 79, 354
NcoI CCATGG 1 cut(s) 267
NdeII GATC 3 cut(s) 110, 196, 556
NlaIV GGNNCC 2 cut(s) 592, 639
NmuCI GTSAC 2 cut(s) 562, 650
NspI RCATGY 3 cut(s) 348, 740, 763
PaeI GCATGC 1 cut(s) 348
PciSI GCTCTTC 1 cut(s) 493
PfeI GAWTC 1 cut(s) 64
PfoI TCCNGGA 1 cut(s) 160
PinAI ACCGGT 1 cut(s) 242
PkrI GCNGC 2 cut(s) 75, 239
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
Psp124BI GAGCTC 1 cut(s) 488
Psp6I CCWGG 3 cut(s) 160, 315, 528
PspEI GGTNACC 1 cut(s) 650
PspGI CCWGG 3 cut(s) 160, 315, 528
PspN4I GGNNCC 2 cut(s) 592, 639
PspPI GGNCC 1 cut(s) 590
PsuI RGATCY 3 cut(s) 110, 196, 556
RsaI GTAC 3 cut(s) 407, 626, 758
RsaNI GTAC 3 cut(s) 406, 625, 757
RseI CAYNNNNRTG 5 cut(s) 349, 632, 686, 699, 741
SacI GAGCTC 1 cut(s) 488
SapI GCTCTTC 1 cut(s) 493
SatI GCNGC 2 cut(s) 74, 238
Sau3AI GATC 3 cut(s) 110, 196, 556
Sau96I GGNCC 1 cut(s) 590
SchI GAGTC 1 cut(s) 502
ScrFI CCNGG 3 cut(s) 162, 317, 530
SduI GDGCHC 5 cut(s) 169, 316, 488, 696, 718
SfcI CTRYAG 1 cut(s) 579
SgrAI CRCCGGYG 1 cut(s) 242
SinI GGWCC 1 cut(s) 590
SmiMI CAYNNNNRTG 5 cut(s) 349, 632, 686, 699, 741
SphI GCATGC 1 cut(s) 348
Sse9I AATT 1 cut(s) 533
SspI AATATT 1 cut(s) 402
SspMI CTAG 3 cut(s) 329, 765, 772
SstI GAGCTC 1 cut(s) 488
StyD4I CCNGG 3 cut(s) 160, 315, 528
StyI CCWWGG 2 cut(s) 232, 267
TaaI ACNGT 4 cut(s) 22, 301, 364, 568
TaiI ACGT 1 cut(s) 276
TaqI TCGA 1 cut(s) 97
TasI AATT 1 cut(s) 533
TatI WGTACW 2 cut(s) 405, 624
TfiI GAWTC 1 cut(s) 64
TscAI CASTG 2 cut(s) 546, 571
TseFI GTSAC 2 cut(s) 562, 650
TseI GCWGC 2 cut(s) 73, 237
Tsp45I GTSAC 2 cut(s) 562, 650
TspDTI ATGAA 1 cut(s) 450
TspGWI ACGGA 1 cut(s) 610
TspRI CASTG 2 cut(s) 546, 571
VneI GTGCAC 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 590
XagI CCTNNNNNAGG 1 cut(s) 123
XapI RAATTY 1 cut(s) 533
XceI RCATGY 3 cut(s) 348, 740, 763
XcmI CCANNNNNNNNNTGG 2 cut(s) 313, 511
XspI CTAG 3 cut(s) 329, 765, 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.