Rorug01G0210900

Male sterility protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000382
Physical Location & Seq
Forward (+)
29838751 .. 29842810
4060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0210900.1

Sequence Viewer

Length: 606 bp
ATGCTGCGCCGCGCCACCGCTCTCTTGACCCGACCCGCATCCGCACTCCGGGCCGCCCGAGCCTTCTCCACCGATGTCGCCGAAGCTCCCGTAGGCAACCCCGCTTTCAACGAGGCCTGGAAGAAGGTCATCCCTCACATCGATCCCCCCAAGACTCCTCTGTCTTTCATGAAGCCCCGCCCTCCGACCCCGTCCTCGATCCCCACTAAGCTCACCGTCAACTTTGTGCTGCCGTACGCATCTGAGCTCTCCGCCAAAGAGGTGGACATGGTCATAATTCCGGCAAGCACTGGGCAGATGGGTGTTCTTCCGGGACATGTGGCAACAATTGCAGAGTTGAAACCTGGCGTCCTATCAGTACATGAAGGAAATGATGTGACAAAGTACTTCGTCAGCAGTGGTTTTGCATTCATCCATGCGAACTCTTACGCAGATATAATTGCTGTTGAGGCTGTCCCTATCGATCGAGTTGATCCAAGTCTTGTCCAGAAAGGGCTTGCGGAGTTCACTCAGAAGCTAAACTCAGCCTCAACTGACTTGGAGAAAGCTGAAGCCCAGATTGGAGTTGACGTGCATAGTGCCCTCAATGCTGCTCTCACAGGCTAG

Protein Analysis

201

Amino Acids

21.29

Weight (kDa)

6.51

Isoelectric Point (pI)

25.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_DE_N PF02823 71 - 142 5e-16 ATP synthase, Delta/Epsilon chain, beta-sandwich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 160
AccBSI CCGCTC 1 cut(s) 20
AccII CGCG 1 cut(s) 12
AciI CCGC 9 cut(s) 10, 18, 36, 42, 54, 102, 178, 252, 500
AclWI GGATC 3 cut(s) 137, 193, 467
AcuI CTGAAG 1 cut(s) 570
AcyI GRCGYC 1 cut(s) 348
AfaI GTAC 3 cut(s) 236, 360, 386
AfiI CCNNNNNNNGG 1 cut(s) 48
AflIII ACRYGT 1 cut(s) 316
AgsI TTSAA 2 cut(s) 109, 340
AjiI CACGTC 1 cut(s) 571
AjnI CCWGG 2 cut(s) 116, 343
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
AluBI AGCT 5 cut(s) 86, 211, 247, 517, 548
AluI AGCT 5 cut(s) 86, 211, 247, 517, 548
Alw21I GWGCWC 1 cut(s) 249
AlwI GGATC 3 cut(s) 137, 193, 467
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 2 cut(s) 51, 114
ApeKI GCWGC 3 cut(s) 4, 229, 590
AspLEI GCGC 2 cut(s) 9, 14
AspS9I GGNCC 1 cut(s) 51
AsuC2I CCSGG 2 cut(s) 50, 312
AsuHPI GGTGA 1 cut(s) 205
AvaI CYCGRG 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 216, 577
BccI CCATC 1 cut(s) 292
BceAI ACGGC 1 cut(s) 217
BciT130I CCWGG 2 cut(s) 118, 345
BcnI CCSGG 2 cut(s) 50, 312
BfaI CTAG 1 cut(s) 604
BisI GCNGC 5 cut(s) 5, 10, 54, 230, 591
BlsI GCNGC 5 cut(s) 6, 11, 55, 231, 592
BmcAI AGTACT 1 cut(s) 386
Bme1390I CCNGG 4 cut(s) 50, 118, 312, 345
BmeT110I CYCGRG 1 cut(s) 57
BmgBI CACGTC 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 51
BmrFI CCNGG 4 cut(s) 50, 118, 312, 345
BmrI ACTGGG 1 cut(s) 300
BmsI GCATC 2 cut(s) 47, 248
BmuI ACTGGG 1 cut(s) 300
BpuMI CCSGG 2 cut(s) 50, 312
Bsa29I ATCGAT 2 cut(s) 141, 462
BsaHI GRCGYC 1 cut(s) 348
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 295
BseBI CCWGG 2 cut(s) 118, 345
BseCI ATCGAT 2 cut(s) 141, 462
BseGI GGATG 3 cut(s) 38, 129, 411
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 3 cut(s) 234, 524, 537
BseNI ACTGG 1 cut(s) 295
BseRI GAGGAG 1 cut(s) 147
BseSI GKGCMC 1 cut(s) 583
BseXI GCAGC 2 cut(s) 216, 577
Bsh1236I CGCG 1 cut(s) 12
Bsh1285I CGRYCG 1 cut(s) 466
BshFI GGCC 2 cut(s) 53, 116
BshVI ATCGAT 2 cut(s) 141, 462
BsiEI CGRYCG 1 cut(s) 466
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 3 cut(s) 49, 281, 311
BsiWI CGTACG 1 cut(s) 234
BslFI GGGAC 2 cut(s) 327, 440
BslI CCNNNNNNNGG 1 cut(s) 48
BsmFI GGGAC 2 cut(s) 327, 440
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 2 cut(s) 53, 116
BsoBI CYCGRG 1 cut(s) 57
Bsp1286I GDGCHC 2 cut(s) 249, 583
Bsp143I GATC 4 cut(s) 142, 198, 463, 472
BspACI CCGC 9 cut(s) 10, 18, 36, 42, 54, 102, 178, 252, 500
BspANI GGCC 2 cut(s) 53, 116
BspCNI CTCAG 3 cut(s) 235, 523, 536
BspDI ATCGAT 2 cut(s) 141, 462
BspFNI CGCG 1 cut(s) 12
BspHI TCATGA 1 cut(s) 168
BspPI GGATC 3 cut(s) 137, 193, 467
BsrBI CCGCTC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 295
BssMI GATC 4 cut(s) 142, 198, 463, 472
BssNI GRCGYC 1 cut(s) 348
Bst2UI CCWGG 2 cut(s) 118, 345
Bst4CI ACNGT 1 cut(s) 217
BstACI GRCGYC 1 cut(s) 348
BstAPI GCANNNNNTGC 1 cut(s) 329
BstC8I GCNNGC 2 cut(s) 286, 498
BstDEI CTNAG 4 cut(s) 207, 243, 510, 523
BstF5I GGATG 3 cut(s) 38, 129, 411
BstFNI CGCG 1 cut(s) 12
BstHHI GCGC 2 cut(s) 9, 14
BstKTI GATC 4 cut(s) 145, 201, 466, 475
BstMBI GATC 4 cut(s) 142, 198, 463, 472
BstMCI CGRYCG 1 cut(s) 466
BstMWI GCNNNNNNNGC 5 cut(s) 50, 59, 329, 449, 587
BstNI CCWGG 2 cut(s) 118, 345
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 4 cut(s) 48, 116, 310, 343
BstSLI GKGCMC 1 cut(s) 583
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 216, 577
BstXI CCANNNNNNTGG 1 cut(s) 262
Bsu15I ATCGAT 2 cut(s) 141, 462
BsuRI GGCC 2 cut(s) 53, 116
BsuTUI ATCGAT 2 cut(s) 141, 462
BtrI CACGTC 1 cut(s) 571
BtsCI GGATG 3 cut(s) 38, 129, 411
BtsI GCAGTG 1 cut(s) 403
BtsIMutI CAGTG 2 cut(s) 288, 403
Cac8I GCNNGC 2 cut(s) 286, 498
CciI TCATGA 1 cut(s) 168
CfoI GCGC 2 cut(s) 9, 14
Cfr13I GGNCC 1 cut(s) 51
ClaI ATCGAT 2 cut(s) 141, 462
CseI GACGC 1 cut(s) 337
Csp6I GTAC 3 cut(s) 235, 359, 385
CviAII CATG 5 cut(s) 169, 268, 317, 362, 416
CviQI GTAC 3 cut(s) 235, 359, 385
DdeI CTNAG 4 cut(s) 207, 243, 510, 523
DpnI GATC 4 cut(s) 144, 200, 465, 474
DpnII GATC 4 cut(s) 142, 198, 463, 472
DrdI GACNNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 160
EciI GGCGGA 1 cut(s) 241
Ecl136II GAGCTC 1 cut(s) 247
Eco147I AGGCCT 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 116, 343
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 5 cut(s) 172, 271, 320, 365, 419
FaiI YATR 8 cut(s) 170, 269, 275, 318, 363, 417, 437, 576
FaqI GGGAC 2 cut(s) 327, 440
FatI CATG 5 cut(s) 168, 267, 316, 361, 415
FauI CCCGC 3 cut(s) 43, 109, 185
Fnu4HI GCNGC 5 cut(s) 5, 10, 54, 230, 591
FokI GGATG 3 cut(s) 25, 116, 398
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 5 cut(s) 5, 10, 54, 230, 591
FspBI CTAG 1 cut(s) 604
GlaI GCGC 2 cut(s) 8, 13
GluI GCNGC 5 cut(s) 5, 10, 54, 230, 591
HaeIII GGCC 2 cut(s) 53, 116
HapII CCGG 3 cut(s) 49, 281, 311
HgaI GACGC 1 cut(s) 337
HhaI GCGC 2 cut(s) 9, 14
Hin1I GRCGYC 1 cut(s) 348
Hin1II CATG 5 cut(s) 172, 271, 320, 365, 419
Hin6I GCGC 2 cut(s) 7, 12
HinP1I GCGC 2 cut(s) 7, 12
HincII GTYRAC 2 cut(s) 220, 568
HindII GTYRAC 2 cut(s) 220, 568
HinfI GANTC 1 cut(s) 154
HpaII CCGG 3 cut(s) 49, 281, 311
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 4 cut(s) 220, 265, 507, 568
Hpy188I TCNGA 3 cut(s) 186, 244, 513
Hpy188III TCNNGA 3 cut(s) 25, 169, 487
Hpy8I GTNNAC 4 cut(s) 220, 265, 507, 568
HpyAV CCTTC 3 cut(s) 73, 118, 359
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 3 cut(s) 332, 407, 574
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 59, 329, 449, 587
HpyF3I CTNAG 4 cut(s) 207, 243, 510, 523
HpySE526I ACGT 1 cut(s) 570
Hsp92I GRCGYC 1 cut(s) 348
Hsp92II CATG 5 cut(s) 172, 271, 320, 365, 419
HspAI GCGC 2 cut(s) 7, 12
Kzo9I GATC 4 cut(s) 142, 198, 463, 472
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 2 cut(s) 216, 577
LweI GCATC 2 cut(s) 47, 248
MaeI CTAG 1 cut(s) 604
MaeII ACGT 1 cut(s) 570
MaeIII GTNAC 1 cut(s) 376
MalI GATC 4 cut(s) 144, 200, 465, 474
MbiI CCGCTC 1 cut(s) 20
MboI GATC 4 cut(s) 142, 198, 463, 472
MboII GAAGA 2 cut(s) 133, 299
MfeI CAATTG 1 cut(s) 327
MhlI GDGCHC 2 cut(s) 249, 583
MluCI AATT 3 cut(s) 276, 327, 438
MlyI GAGTC 1 cut(s) 148
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 9 cut(s) 106, 144, 168, 192, 205, 253, 442, 538, 593
MspI CCGG 3 cut(s) 49, 281, 311
MspR9I CCNGG 4 cut(s) 50, 118, 312, 345
MteI GCGCNGCGC 1 cut(s) 10
MunI CAATTG 1 cut(s) 327
Mva1269I GAATGC 1 cut(s) 407
MvaI CCWGG 2 cut(s) 118, 345
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 5 cut(s) 50, 59, 329, 449, 587
NciI CCSGG 2 cut(s) 50, 312
NdeII GATC 4 cut(s) 142, 198, 463, 472
NlaIII CATG 5 cut(s) 172, 271, 320, 365, 419
NmuCI GTSAC 1 cut(s) 376
NspI RCATGY 1 cut(s) 320
PagI TCATGA 1 cut(s) 168
PceI AGGCCT 1 cut(s) 116
PciI ACATGT 1 cut(s) 316
PctI GAATGC 1 cut(s) 407
Pfl23II CGTACG 1 cut(s) 234
PflFI GACNNNGTC 2 cut(s) 190, 269
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 5 cut(s) 6, 11, 55, 231, 592
Ple19I CGATCG 1 cut(s) 466
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PscI ACATGT 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 116, 343
PspGI CCWGG 2 cut(s) 116, 343
PspLI CGTACG 1 cut(s) 234
PspPI GGNCC 1 cut(s) 51
PsyI GACNNNGTC 2 cut(s) 190, 269
PvuI CGATCG 1 cut(s) 466
RsaI GTAC 3 cut(s) 236, 360, 386
RsaNI GTAC 3 cut(s) 235, 359, 385
SacI GAGCTC 1 cut(s) 249
SatI GCNGC 5 cut(s) 5, 10, 54, 230, 591
Sau3AI GATC 4 cut(s) 142, 198, 463, 472
Sau96I GGNCC 1 cut(s) 51
ScaI AGTACT 1 cut(s) 386
SchI GAGTC 1 cut(s) 148
ScrFI CCNGG 4 cut(s) 50, 118, 312, 345
SduI GDGCHC 2 cut(s) 249, 583
SetI ASST 9 cut(s) 88, 129, 213, 249, 264, 346, 519, 550, 573
SfaNI GCATC 2 cut(s) 47, 248
Sse9I AATT 3 cut(s) 276, 327, 438
SseBI AGGCCT 1 cut(s) 116
SsiI CCGC 9 cut(s) 10, 18, 36, 42, 54, 102, 178, 252, 500
SspMI CTAG 1 cut(s) 604
SstI GAGCTC 1 cut(s) 249
StuI AGGCCT 1 cut(s) 116
StyD4I CCNGG 4 cut(s) 48, 116, 310, 343
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 1 cut(s) 573
TaqI TCGA 4 cut(s) 141, 197, 462, 466
TasI AATT 3 cut(s) 276, 327, 438
TatI WGTACW 2 cut(s) 358, 384
TauI GCSGC 2 cut(s) 12, 56
TscAI CASTG 2 cut(s) 295, 403
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 3 cut(s) 4, 229, 590
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 4 cut(s) 157, 185, 378, 400
TspRI CASTG 2 cut(s) 295, 403
Tth111I GACNNNGTC 2 cut(s) 190, 269
XceI RCATGY 1 cut(s) 320
XspI CTAG 1 cut(s) 604
ZrmI AGTACT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.