Rw0G018760

Male sterility protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00847
Physical Location & Seq
Reverse (-)
97038 .. 99965
2928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G018760.1

Sequence Viewer

Length: 897 bp
ATGGAGGAAGTCAGAGGCACAGTTTGTGTAACTGGTGGAACAGGATATATAGCCTCATGGCTGATTCTGAGGCTGCTTCAGCATGGTTACTCGGTTCGAGCCACCATTAGATCCAACCCTGCTGAAGGCAAGAGAGATATCAGCTACCTGACAAGCCTTCCAGGAGCACAAGAGAAACTCCAAATCTTCCATGCAGATCTCAACAACCCCGAGACCTTCAACGACGCCATCCAAGGCTGCACCGGTGTCTTCCACCTTGCTCACCCCATGGACGTTGAAGGCAAAGAACCCGAGGAAACCGTTACCAAACGAGCCCTGGAAGGAACATTAGGCATTTTGAAGGCATGCCTAAGTTGCAAGACGGTGAGGCGAGTGGTTTACACATCCAGTTTGGCCACAATATTGTACAACAGCAAGCGTCTTGAAGAAACTGATGAAAACACTTGGAGTGAGGTTGATGTATGCAGAAGTAACAAGCTTGTGAGCTCTTCTTACTTGGTTTCCAAGACTCTGGTGGAGAGGTCAGCCCTGGAATTTGCAGTGAGGAATGGTTTGGATCTTGTCACTGTGGTTTTGCCTATAGTAGTTGGACCCTTCGTTTGTCCAAATGTTCCTGCTTCCGTGTACATGGGCATGGCTCCCATTTTTGGTGACCAAGAGCAATGTAAATATCTTGTTCGCACATATATGGTGCACATAGATGATGTGGCGAGTGCCCATATCTTCCTTCTTGAACATGCTAATGCAAAAGGGAGTCAGTTAATGGAGATTAAAGGTTACAAAGGAACTAATGTGTCATCAACGAAACTGTTGAATACTGGCTTCAAATTTAAATGCGGCCTTGGGGAAATGTTTGATGGCGCTATTCAATCTTGCAAAGAGAAGGGTTTTCTATAA

Protein Analysis

298

Amino Acids

32.75

Weight (kDa)

6.66

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 7 - 128 1.7e-08 NmrA-like family
Epimerase PF01370 8 - 250 2.6e-23 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 10 - 192 1.9e-17 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 10 - 130 7.7e-13 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 10 - 201 7.3e-11 Male sterility protein
NAD_binding_10 PF13460 12 - 133 2.7e-07 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 837
AclWI GGATC 2 cut(s) 105, 564
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 2 cut(s) 533, 827
AcuI CTGAAG 2 cut(s) 62, 144
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 2 cut(s) 407, 626
AfiI CCNNNNNNNGG 2 cut(s) 125, 647
AgeI ACCGGT 1 cut(s) 242
AgsI TTSAA 8 cut(s) 220, 278, 340, 425, 734, 814, 826, 869
AjnI CCWGG 3 cut(s) 160, 315, 528
AluBI AGCT 3 cut(s) 144, 478, 486
AluI AGCT 3 cut(s) 144, 478, 486
Alw21I GWGCWC 3 cut(s) 169, 488, 696
Alw26I GTCTC 1 cut(s) 206
Alw44I GTGCAC 1 cut(s) 692
AlwI GGATC 2 cut(s) 105, 564
Ama87I CYCGRG 2 cut(s) 209, 290
AoxI GGCC 2 cut(s) 393, 838
ApaLI GTGCAC 1 cut(s) 692
ApeKI GCWGC 2 cut(s) 73, 237
ApoI RAATTY 2 cut(s) 533, 827
ArsI GACNNNNNNTTYG 2 cut(s) 582, 614
AsiGI ACCGGT 1 cut(s) 242
AspLEI GCGC 1 cut(s) 863
AspS9I GGNCC 1 cut(s) 590
AsuHPI GGTGA 3 cut(s) 254, 376, 662
AvaI CYCGRG 2 cut(s) 209, 290
AvaII GGWCC 1 cut(s) 590
BaeGI GKGCMC 2 cut(s) 696, 718
BalI TGGCCA 1 cut(s) 395
BanII GRGCYC 2 cut(s) 316, 488
BbsI GAAGAC 1 cut(s) 241
Bbv12I GWGCWC 3 cut(s) 169, 488, 696
BbvI GCAGC 2 cut(s) 60, 224
BccI CCATC 2 cut(s) 236, 851
BciT130I CCWGG 3 cut(s) 162, 317, 530
BcoDI GTCTC 1 cut(s) 206
BfmI CTRYAG 1 cut(s) 579
BfoI RGCGCY 1 cut(s) 864
BglII AGATCT 1 cut(s) 196
BisI GCNGC 3 cut(s) 74, 238, 838
BlsI GCNGC 3 cut(s) 75, 239, 839
Bme1390I CCNGG 3 cut(s) 162, 317, 530
Bme18I GGWCC 1 cut(s) 590
BmeT110I CYCGRG 2 cut(s) 209, 290
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 2 cut(s) 592, 639
BmrFI CCNGG 3 cut(s) 162, 317, 530
BpiI GAAGAC 1 cut(s) 241
BsaHI GRCGYC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 6 cut(s) 232, 267, 291, 315, 528, 841
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 647
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 3 cut(s) 37, 387, 823
Bse3DI GCAATG 1 cut(s) 668
BseBI CCWGG 3 cut(s) 162, 317, 530
BseDI CCNNGG 6 cut(s) 232, 267, 291, 315, 528, 841
BseGI GGATG 2 cut(s) 228, 383
BseLI CCNNNNNNNGG 2 cut(s) 125, 647
BseMI GCAATG 1 cut(s) 668
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 3 cut(s) 37, 387, 823
BseSI GKGCMC 2 cut(s) 696, 718
BseXI GCAGC 2 cut(s) 60, 224
BsgI GTGCAG 1 cut(s) 223
BshFI GGCC 2 cut(s) 395, 840
BshTI ACCGGT 1 cut(s) 242
BsiHKAI GWGCWC 3 cut(s) 169, 488, 696
BsiHKCI CYCGRG 2 cut(s) 209, 290
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 125, 647
BsmAI GTCTC 1 cut(s) 206
BsnI GGCC 2 cut(s) 395, 840
Bso31I GGTCTC 1 cut(s) 206
BsoBI CYCGRG 2 cut(s) 209, 290
Bsp1286I GDGCHC 5 cut(s) 169, 316, 488, 696, 718
Bsp1407I TGTACA 2 cut(s) 405, 624
Bsp143I GATC 3 cut(s) 110, 196, 556
Bsp19I CCATGG 1 cut(s) 267
BspACI CCGC 1 cut(s) 837
BspANI GGCC 2 cut(s) 395, 840
BspCNI CTCAG 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 592, 639
BspPI GGATC 2 cut(s) 105, 564
BspQI GCTCTTC 1 cut(s) 493
BspTNI GGTCTC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 668
BsrFI RCCGGY 1 cut(s) 242
BsrGI TGTACA 2 cut(s) 405, 624
BsrI ACTGG 3 cut(s) 37, 387, 823
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 6 cut(s) 232, 267, 291, 315, 528, 841
BssMI GATC 3 cut(s) 110, 196, 556
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 3 cut(s) 232, 267, 841
Bst2UI CCWGG 3 cut(s) 162, 317, 530
Bst4CI ACNGT 5 cut(s) 22, 301, 364, 568, 810
Bst6I CTCTTC 1 cut(s) 493
BstACI GRCGYC 1 cut(s) 225
BstAUI TGTACA 2 cut(s) 405, 624
BstC8I GCNNGC 2 cut(s) 346, 416
BstDEI CTNAG 2 cut(s) 68, 350
BstDSI CCRYGG 1 cut(s) 267
BstEII GGTNACC 1 cut(s) 650
BstENI CCTNNNNNAGG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 228, 383
BstH2I RGCGCY 1 cut(s) 864
BstHHI GCGC 1 cut(s) 863
BstKTI GATC 3 cut(s) 113, 199, 559
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 3 cut(s) 110, 196, 556
BstMWI GCNNNNNNNGC 2 cut(s) 79, 354
BstNI CCWGG 3 cut(s) 162, 317, 530
BstNSI RCATGY 2 cut(s) 348, 740
BstPI GGTNACC 1 cut(s) 650
BstSCI CCNGG 3 cut(s) 160, 315, 528
BstSFI CTRYAG 1 cut(s) 579
BstSLI GKGCMC 2 cut(s) 696, 718
BstV1I GCAGC 2 cut(s) 60, 224
BstV2I GAAGAC 1 cut(s) 241
BstX2I RGATCY 3 cut(s) 110, 196, 556
BstXI CCANNNNNNTGG 1 cut(s) 511
BstYI RGATCY 3 cut(s) 110, 196, 556
BsuRI GGCC 2 cut(s) 395, 840
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 2 cut(s) 228, 383
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 2 cut(s) 546, 564
Cac8I GCNNGC 2 cut(s) 346, 416
CfoI GCGC 1 cut(s) 863
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 590
CseI GACGC 2 cut(s) 233, 407
Csp6I GTAC 2 cut(s) 406, 625
CspAI ACCGGT 1 cut(s) 242
CviAII CATG 8 cut(s) 57, 83, 191, 268, 345, 628, 634, 737
CviQI GTAC 2 cut(s) 406, 625
DdeI CTNAG 2 cut(s) 68, 350
DpnI GATC 3 cut(s) 112, 198, 558
DpnII GATC 3 cut(s) 110, 196, 556
DraI TTTAAA 1 cut(s) 832
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 493
EarI CTCTTC 1 cut(s) 493
Ecl136II GAGCTC 1 cut(s) 486
Eco130I CCWWGG 3 cut(s) 232, 267, 841
Eco24I GRGCYC 2 cut(s) 316, 488
Eco31I GGTCTC 1 cut(s) 206
Eco32I GATATC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 590
Eco53kI GAGCTC 1 cut(s) 486
Eco57I CTGAAG 2 cut(s) 62, 144
Eco88I CYCGRG 2 cut(s) 209, 290
Eco91I GGTNACC 1 cut(s) 650
EcoICRI GAGCTC 1 cut(s) 486
EcoNI CCTNNNNNAGG 1 cut(s) 123
EcoO65I GGTNACC 1 cut(s) 650
EcoRII CCWGG 3 cut(s) 160, 315, 528
EcoRV GATATC 1 cut(s) 139
EcoT14I CCWWGG 3 cut(s) 232, 267, 841
EcoT38I GRGCYC 2 cut(s) 316, 488
ErhI CCWWGG 3 cut(s) 232, 267, 841
FaeI CATG 8 cut(s) 60, 86, 194, 271, 348, 631, 637, 740
FatI CATG 8 cut(s) 56, 82, 190, 267, 344, 627, 633, 736
Fnu4HI GCNGC 3 cut(s) 74, 238, 838
FokI GGATG 2 cut(s) 215, 370
FriOI GRGCYC 2 cut(s) 316, 488
Fsp4HI GCNGC 3 cut(s) 74, 238, 838
GlaI GCGC 1 cut(s) 862
GluI GCNGC 3 cut(s) 74, 238, 838
HaeII RGCGCY 1 cut(s) 864
HaeIII GGCC 2 cut(s) 395, 840
HapII CCGG 1 cut(s) 243
HgaI GACGC 2 cut(s) 233, 407
HhaI GCGC 1 cut(s) 863
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 8 cut(s) 60, 86, 194, 271, 348, 631, 637, 740
Hin6I GCGC 1 cut(s) 861
HinP1I GCGC 1 cut(s) 861
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 3 cut(s) 64, 508, 754
HpaII CCGG 1 cut(s) 243
HphI GGTGA 3 cut(s) 254, 376, 662
Hpy166II GTNNAC 3 cut(s) 379, 625, 694
Hpy188I TCNGA 2 cut(s) 14, 69
Hpy188III TCNNGA 2 cut(s) 422, 731
Hpy8I GTNNAC 3 cut(s) 379, 625, 694
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 9 cut(s) 119, 167, 226, 272, 314, 334, 604, 737, 877
HpyCH4III ACNGT 5 cut(s) 22, 301, 364, 568, 810
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 8 cut(s) 194, 240, 357, 465, 539, 694, 746, 876
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 354
HpyF3I CTNAG 2 cut(s) 68, 350
HpySE526I ACGT 1 cut(s) 273
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 8 cut(s) 60, 86, 194, 271, 348, 631, 637, 740
HspAI GCGC 1 cut(s) 861
Kzo9I GATC 3 cut(s) 110, 196, 556
LguI GCTCTTC 1 cut(s) 493
LmnI GCTCC 2 cut(s) 164, 643
Lsp1109I GCAGC 2 cut(s) 60, 224
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 7 cut(s) 28, 86, 301, 470, 562, 650, 776
MalI GATC 3 cut(s) 112, 198, 558
MboI GATC 3 cut(s) 110, 196, 556
MboII GAAGA 5 cut(s) 178, 241, 437, 480, 715
MflI RGATCY 3 cut(s) 110, 196, 556
MhlI GDGCHC 5 cut(s) 169, 316, 488, 696, 718
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 2 cut(s) 533, 827
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 2 cut(s) 502, 763
MmeI TCCRAC 2 cut(s) 138, 568
MnlI CCTC 8 cut(s) 8, 63, 64, 286, 360, 445, 513, 537
Mox20I TGGCCA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 395
MseI TTAA 3 cut(s) 761, 771, 831
MslI CAYNNNNRTG 4 cut(s) 632, 686, 699, 741
Msp20I TGGCCA 1 cut(s) 395
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 3 cut(s) 162, 317, 530
MvaI CCWGG 3 cut(s) 162, 317, 530
MwoI GCNNNNNNNGC 2 cut(s) 79, 354
NcoI CCATGG 1 cut(s) 267
NdeII GATC 3 cut(s) 110, 196, 556
NlaIII CATG 8 cut(s) 60, 86, 194, 271, 348, 631, 637, 740
NlaIV GGNNCC 2 cut(s) 592, 639
NmuCI GTSAC 2 cut(s) 562, 650
NspI RCATGY 2 cut(s) 348, 740
PaeI GCATGC 1 cut(s) 348
PciSI GCTCTTC 1 cut(s) 493
PfeI GAWTC 1 cut(s) 64
PfoI TCCNGGA 1 cut(s) 160
PinAI ACCGGT 1 cut(s) 242
PkrI GCNGC 3 cut(s) 75, 239, 839
PleI GAGTC 2 cut(s) 502, 762
PpsI GAGTC 2 cut(s) 502, 762
Psp124BI GAGCTC 1 cut(s) 488
Psp6I CCWGG 3 cut(s) 160, 315, 528
PspEI GGTNACC 1 cut(s) 650
PspGI CCWGG 3 cut(s) 160, 315, 528
PspN4I GGNNCC 2 cut(s) 592, 639
PspPI GGNCC 1 cut(s) 590
PsuI RGATCY 3 cut(s) 110, 196, 556
RsaI GTAC 2 cut(s) 407, 626
RsaNI GTAC 2 cut(s) 406, 625
RseI CAYNNNNRTG 4 cut(s) 632, 686, 699, 741
SacI GAGCTC 1 cut(s) 488
SapI GCTCTTC 1 cut(s) 493
SaqAI TTAA 3 cut(s) 761, 771, 831
SatI GCNGC 3 cut(s) 74, 238, 838
Sau3AI GATC 3 cut(s) 110, 196, 556
Sau96I GGNCC 1 cut(s) 590
SchI GAGTC 2 cut(s) 502, 763
ScrFI CCNGG 3 cut(s) 162, 317, 530
SduI GDGCHC 5 cut(s) 169, 316, 488, 696, 718
SfcI CTRYAG 1 cut(s) 579
SgrAI CRCCGGYG 1 cut(s) 242
SinI GGWCC 1 cut(s) 590
SmiI ATTTAAAT 1 cut(s) 832
SmiMI CAYNNNNRTG 4 cut(s) 632, 686, 699, 741
SphI GCATGC 1 cut(s) 348
Sse9I AATT 2 cut(s) 533, 827
SsiI CCGC 1 cut(s) 837
SspI AATATT 1 cut(s) 402
SstI GAGCTC 1 cut(s) 488
StyD4I CCNGG 3 cut(s) 160, 315, 528
StyI CCWWGG 3 cut(s) 232, 267, 841
SwaI ATTTAAAT 1 cut(s) 832
TaaI ACNGT 5 cut(s) 22, 301, 364, 568, 810
TaiI ACGT 1 cut(s) 276
TaqI TCGA 1 cut(s) 97
TasI AATT 2 cut(s) 533, 827
TatI WGTACW 2 cut(s) 405, 624
TauI GCSGC 1 cut(s) 840
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 3 cut(s) 761, 771, 831
Tru9I TTAA 3 cut(s) 761, 771, 831
TscAI CASTG 2 cut(s) 546, 571
TseFI GTSAC 2 cut(s) 562, 650
TseI GCWGC 2 cut(s) 73, 237
Tsp45I GTSAC 2 cut(s) 562, 650
TspDTI ATGAA 1 cut(s) 450
TspGWI ACGGA 1 cut(s) 610
TspRI CASTG 2 cut(s) 546, 571
VneI GTGCAC 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 590
XagI CCTNNNNNAGG 1 cut(s) 123
XapI RAATTY 2 cut(s) 533, 827
XceI RCATGY 2 cut(s) 348, 740
XcmI CCANNNNNNNNNTGG 2 cut(s) 313, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.