Prupe.2G144600_v2.0.a1

3-beta hydroxysteroid dehydrogenase/isomerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000382
Physical Location & Seq
Forward (+)
20166198 .. 20167981
1784 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G144600.1

Sequence Viewer

Length: 975 bp
ATGGAGAAGGGTCCAGTTTGTGTAACAGGCGGAACTGGATTTGTTGCCTCATGGCTTGTTATGAGGCTTCTGCAACATGGTTACACTGTTCGAACTACGGTTAGACCTGACCCAGAATGCAAGAGAGACCTCAGCTTCCTCACAAGCCTGCCAAGAGCATCAGAGAATCTCCAAATCTTCAATGCAGATCTCAACCAACCAGACAGCTTCAATGATGCAATTGAAGGATGCATAGGGGTCTTCCATGTTGCTCACCCCATGCCTACCAAAGAACTTGATGAAGAAGTAGTGACCAAAAAAGCTGTCCAAGGAGCCCTAGGCATATTGAAAGCCTGCCTAAACTCCAAGACTGTGAAGAGGGTTGTGTACACTTCTAGTGCATCAGCTGTGGCTTACAGTGGCGGCAGCCAAGACTTGGTGGATGAGAGCTCATGGAGTGATATTGAATTTCATAGGTCTCTTAAAATATTTGGGACTTCATATGTTGCTGCCAAGACCAAAACAGAGCAAGCTATCCTGGAATTTGCAGAGAAAAGTGGATTGGAAGTTGTCACTTTGATCCCTCCATTAGTTGTTGGTGGATTTATCTGCAAAAACTTCCCTAGTTCAGTTTACTTGGCCCTGGCCATGATTTTAGGAAATCAAGATCACTATAGATATCTTATCAGGCCAAGTTTAGTACATGTAGATGATTTGGTTAGTGCCCATATCTTTCTTTTTGAAAATTCTGATGCAAAGGGGAGGTACATTTGTTCATCAAATCAGGTACCCATAGATGAAATGTCCCAATTTCTGTCTGCAAAATACCCTGATTTTCCCATACCCACAACTGATTTCTTGAAGGGCATTGAAGGTTTCAAATCATGTGGCTTCTCATCACAAAAGCTCCTGAGTTCTGGATTCAAGTTTAAGCATGGACTCGATGACATGTTTGGTGATGCAATTCAATCTTGTAGAGAAAAGGGTTTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

325

Amino Acids

35.62

Weight (kDa)

6.08

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 766
AccB1I GGYRCC 1 cut(s) 766
AccB7I CCANNNNNTGG 1 cut(s) 415
AciI CCGC 2 cut(s) 30, 402
AclWI GGATC 1 cut(s) 553
AcoI YGGCCR 1 cut(s) 624
AcsI RAATTY 3 cut(s) 446, 521, 724
AfaI GTAC 4 cut(s) 368, 681, 746, 768
AfiI CCNNNNNNNGG 1 cut(s) 415
AflIII ACRYGT 2 cut(s) 682, 927
AjnI CCWGG 2 cut(s) 516, 621
AjuI GAANNNNNNNTTGG 2 cut(s) 524, 556
AluBI AGCT 7 cut(s) 135, 207, 302, 386, 429, 512, 886
AluI AGCT 7 cut(s) 135, 207, 302, 386, 429, 512, 886
Alw21I GWGCWC 1 cut(s) 431
Alw26I GTCTC 2 cut(s) 120, 462
AlwI GGATC 1 cut(s) 553
AoxI GGCC 3 cut(s) 618, 624, 668
ApeKI GCWGC 2 cut(s) 405, 488
ApoI RAATTY 3 cut(s) 446, 521, 724
ArsI GACNNNNNNTTYG 2 cut(s) 288, 320
Asp718I GGTACC 1 cut(s) 766
AspA2I CCTAGG 1 cut(s) 316
AspS9I GGNCC 2 cut(s) 11, 619
AsuHPI GGTGA 2 cut(s) 245, 947
AsuII TTCGAA 1 cut(s) 91
AvaII GGWCC 1 cut(s) 11
AvrII CCTAGG 1 cut(s) 316
BaeGI GKGCMC 1 cut(s) 706
BaeI ACNNNNGTAYC 2 cut(s) 736, 769
BalI TGGCCA 1 cut(s) 626
BanI GGYRCC 1 cut(s) 766
BanII GRGCYC 2 cut(s) 316, 431
BbsI GAAGAC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 431
BbvCI CCTCAGC 1 cut(s) 131
BbvI GCAGC 2 cut(s) 417, 475
BciT130I CCWGG 2 cut(s) 518, 623
BcoDI GTCTC 2 cut(s) 120, 462
BfaI CTAG 3 cut(s) 317, 375, 603
BfmI CTRYAG 1 cut(s) 652
BglII AGATCT 1 cut(s) 187
BisI GCNGC 3 cut(s) 403, 406, 489
BlnI CCTAGG 1 cut(s) 316
BlsI GCNGC 3 cut(s) 404, 407, 490
Bme1390I CCNGG 2 cut(s) 518, 623
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 2 cut(s) 11, 619
BmiI GGNNCC 3 cut(s) 12, 313, 768
BmrFI CCNGG 2 cut(s) 518, 623
BmsI GCATC 6 cut(s) 167, 205, 218, 389, 721, 928
BpiI GAAGAC 1 cut(s) 232
Bpu10I CCTNAGC 1 cut(s) 131
Bpu14I TTCGAA 1 cut(s) 91
BsaI GGTCTC 2 cut(s) 120, 462
BsaJI CCNNGG 3 cut(s) 307, 316, 621
BsaXI ACNNNNNCTCC 2 cut(s) 870, 900
Bsc4I CCNNNNNNNGG 1 cut(s) 415
Bse1I ACTGG 2 cut(s) 14, 40
BseBI CCWGG 2 cut(s) 518, 623
BseDI CCNNGG 3 cut(s) 307, 316, 621
BseGI GGATG 2 cut(s) 233, 427
BseLI CCNNNNNNNGG 1 cut(s) 415
BseMII CTCAG 2 cut(s) 145, 881
BseNI ACTGG 2 cut(s) 14, 40
BseSI GKGCMC 1 cut(s) 706
BseXI GCAGC 2 cut(s) 417, 475
BshFI GGCC 3 cut(s) 620, 626, 670
BshNI GGYRCC 1 cut(s) 766
BsiHKAI GWGCWC 1 cut(s) 431
BslFI GGGAC 2 cut(s) 487, 769
BslI CCNNNNNNNGG 1 cut(s) 415
BsmAI GTCTC 2 cut(s) 120, 462
BsmFI GGGAC 2 cut(s) 487, 769
BsmI GAATGC 1 cut(s) 122
BsnI GGCC 3 cut(s) 620, 626, 670
Bso31I GGTCTC 2 cut(s) 120, 462
Bsp119I TTCGAA 1 cut(s) 91
Bsp1286I GDGCHC 3 cut(s) 316, 431, 706
Bsp1407I TGTACA 1 cut(s) 366
Bsp143I GATC 3 cut(s) 187, 558, 646
BspACI CCGC 2 cut(s) 30, 402
BspANI GGCC 3 cut(s) 620, 626, 670
BspCNI CTCAG 2 cut(s) 144, 882
BspLI GGNNCC 3 cut(s) 12, 313, 768
BspPI GGATC 1 cut(s) 553
BspT104I TTCGAA 1 cut(s) 91
BspT107I GGYRCC 1 cut(s) 766
BspTNI GGTCTC 2 cut(s) 120, 462
BsrGI TGTACA 1 cut(s) 366
BsrI ACTGG 2 cut(s) 14, 40
BssECI CCNNGG 3 cut(s) 307, 316, 621
BssMI GATC 3 cut(s) 187, 558, 646
BssT1I CCWWGG 2 cut(s) 307, 316
Bst2UI CCWGG 2 cut(s) 518, 623
Bst4CI ACNGT 4 cut(s) 88, 100, 352, 398
Bst6I CTCTTC 1 cut(s) 350
BstAUI TGTACA 1 cut(s) 366
BstBI TTCGAA 1 cut(s) 91
BstC8I GCNNGC 3 cut(s) 149, 334, 510
BstDEI CTNAG 2 cut(s) 131, 890
BstF5I GGATG 2 cut(s) 233, 427
BstKTI GATC 3 cut(s) 190, 561, 649
BstMAI GTCTC 2 cut(s) 120, 462
BstMBI GATC 3 cut(s) 187, 558, 646
BstNI CCWGG 2 cut(s) 518, 623
BstNSI RCATGY 2 cut(s) 686, 931
BstSCI CCNGG 2 cut(s) 516, 621
BstSFI CTRYAG 1 cut(s) 652
BstSLI GKGCMC 1 cut(s) 706
BstV1I GCAGC 2 cut(s) 417, 475
BstV2I GAAGAC 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BsuRI GGCC 3 cut(s) 620, 626, 670
BtsCI GGATG 2 cut(s) 233, 427
BtsIMutI CAGTG 2 cut(s) 84, 403
Cac8I GCNNGC 3 cut(s) 149, 334, 510
Cfr13I GGNCC 2 cut(s) 11, 619
Csp6I GTAC 4 cut(s) 367, 680, 745, 767
CspCI CAANNNNNGTGG 2 cut(s) 847, 882
CviQI GTAC 4 cut(s) 367, 680, 745, 767
DdeI CTNAG 2 cut(s) 131, 890
DpnI GATC 3 cut(s) 189, 560, 648
DpnII GATC 3 cut(s) 187, 558, 646
EaeI YGGCCR 1 cut(s) 624
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
EciI GGCGGA 1 cut(s) 45
Ecl136II GAGCTC 1 cut(s) 429
Eco130I CCWWGG 2 cut(s) 307, 316
Eco24I GRGCYC 2 cut(s) 316, 431
Eco31I GGTCTC 2 cut(s) 120, 462
Eco32I GATATC 1 cut(s) 659
Eco47I GGWCC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 429
EcoICRI GAGCTC 1 cut(s) 429
EcoRII CCWGG 2 cut(s) 516, 621
EcoRV GATATC 1 cut(s) 659
EcoT14I CCWWGG 2 cut(s) 307, 316
EcoT22I ATGCAT 1 cut(s) 233
EcoT38I GRGCYC 2 cut(s) 316, 431
ErhI CCWWGG 2 cut(s) 307, 316
FaqI GGGAC 2 cut(s) 487, 769
FauNDI CATATG 1 cut(s) 481
Fnu4HI GCNGC 3 cut(s) 403, 406, 489
FokI GGATG 2 cut(s) 240, 434
FriOI GRGCYC 2 cut(s) 316, 431
Fsp4HI GCNGC 3 cut(s) 403, 406, 489
FspBI CTAG 3 cut(s) 317, 375, 603
GluI GCNGC 3 cut(s) 403, 406, 489
HaeIII GGCC 3 cut(s) 620, 626, 670
HinfI GANTC 3 cut(s) 166, 900, 918
HphI GGTGA 2 cut(s) 245, 947
Hpy166II GTNNAC 3 cut(s) 367, 369, 613
Hpy188I TCNGA 2 cut(s) 163, 730
Hpy188III TCNNGA 4 cut(s) 644, 838, 889, 897
Hpy8I GTNNAC 3 cut(s) 367, 369, 613
HpyAV CCTTC 3 cut(s) 218, 835, 845
HpyCH4III ACNGT 4 cut(s) 88, 100, 352, 398
HpyF3I CTNAG 2 cut(s) 131, 890
KpnI GGTACC 1 cut(s) 770
Kzo9I GATC 3 cut(s) 187, 558, 646
LmnI GCTCC 2 cut(s) 311, 891
Lsp1109I GCAGC 2 cut(s) 417, 475
LweI GCATC 6 cut(s) 167, 205, 218, 389, 721, 928
MaeI CTAG 3 cut(s) 317, 375, 603
MaeIII GTNAC 4 cut(s) 22, 80, 289, 550
MalI GATC 3 cut(s) 189, 560, 648
MboI GATC 3 cut(s) 187, 558, 646
MboII GAAGA 4 cut(s) 169, 232, 293, 367
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 3 cut(s) 316, 431, 706
MlsI TGGCCA 1 cut(s) 626
MluCI AATT 6 cut(s) 219, 446, 521, 724, 788, 942
MluNI TGGCCA 1 cut(s) 626
MlyI GAGTC 1 cut(s) 912
MnlI CCTC 7 cut(s) 57, 58, 140, 149, 351, 573, 735
Mox20I TGGCCA 1 cut(s) 626
Mph1103I ATGCAT 1 cut(s) 233
MscI TGGCCA 1 cut(s) 626
MseI TTAA 3 cut(s) 462, 909, 973
MslI CAYNNNNRTG 1 cut(s) 687
Msp20I TGGCCA 1 cut(s) 626
MspA1I CMGCKG 1 cut(s) 386
MspR9I CCNGG 2 cut(s) 518, 623
MunI CAATTG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 122
MvaI CCWGG 2 cut(s) 518, 623
NdeI CATATG 1 cut(s) 481
NdeII GATC 3 cut(s) 187, 558, 646
NlaIV GGNNCC 3 cut(s) 12, 313, 768
NmuCI GTSAC 2 cut(s) 289, 550
NsiI ATGCAT 1 cut(s) 233
NspI RCATGY 2 cut(s) 686, 931
NspV TTCGAA 1 cut(s) 91
PciI ACATGT 2 cut(s) 682, 927
PctI GAATGC 1 cut(s) 122
PfeI GAWTC 2 cut(s) 166, 900
PflMI CCANNNNNTGG 1 cut(s) 415
PfoI TCCNGGA 1 cut(s) 516
PkrI GCNGC 3 cut(s) 404, 407, 490
PleI GAGTC 1 cut(s) 912
PpsI GAGTC 1 cut(s) 912
PscI ACATGT 2 cut(s) 682, 927
Psp124BI GAGCTC 1 cut(s) 431
Psp6I CCWGG 2 cut(s) 516, 621
PspGI CCWGG 2 cut(s) 516, 621
PspN4I GGNNCC 3 cut(s) 12, 313, 768
PspPI GGNCC 2 cut(s) 11, 619
PsuI RGATCY 1 cut(s) 187
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 4 cut(s) 368, 681, 746, 768
RsaNI GTAC 4 cut(s) 367, 680, 745, 767
RseI CAYNNNNRTG 1 cut(s) 687
SacI GAGCTC 1 cut(s) 431
SaqAI TTAA 3 cut(s) 462, 909, 973
SatI GCNGC 3 cut(s) 403, 406, 489
Sau3AI GATC 3 cut(s) 187, 558, 646
Sau96I GGNCC 2 cut(s) 11, 619
SchI GAGTC 1 cut(s) 912
ScrFI CCNGG 2 cut(s) 518, 623
SduI GDGCHC 3 cut(s) 316, 431, 706
SfaNI GCATC 6 cut(s) 167, 205, 218, 389, 721, 928
SfcI CTRYAG 1 cut(s) 652
SfuI TTCGAA 1 cut(s) 91
SinI GGWCC 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 687
Sse9I AATT 6 cut(s) 219, 446, 521, 724, 788, 942
SsiI CCGC 2 cut(s) 30, 402
SspI AATATT 1 cut(s) 468
SspMI CTAG 3 cut(s) 317, 375, 603
SstI GAGCTC 1 cut(s) 431
StyD4I CCNGG 2 cut(s) 516, 621
StyI CCWWGG 2 cut(s) 307, 316
TaaI ACNGT 4 cut(s) 88, 100, 352, 398
TaqI TCGA 2 cut(s) 91, 921
TasI AATT 6 cut(s) 219, 446, 521, 724, 788, 942
TatI WGTACW 2 cut(s) 366, 679
TauI GCSGC 1 cut(s) 405
TfiI GAWTC 2 cut(s) 166, 900
Tru1I TTAA 3 cut(s) 462, 909, 973
Tru9I TTAA 3 cut(s) 462, 909, 973
TscAI CASTG 2 cut(s) 91, 403
TseFI GTSAC 2 cut(s) 289, 550
TseI GCWGC 2 cut(s) 405, 488
Tsp45I GTSAC 2 cut(s) 289, 550
TspDTI ATGAA 5 cut(s) 294, 440, 468, 744, 792
TspRI CASTG 2 cut(s) 91, 403
Van91I CCANNNNNTGG 1 cut(s) 415
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 3 cut(s) 446, 521, 724
XceI RCATGY 2 cut(s) 686, 931
XmaJI CCTAGG 1 cut(s) 316
XspI CTAG 3 cut(s) 317, 375, 603
Zsp2I ATGCAT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.