RLG00000035411

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000382
Physical Location & Seq
Forward (+)
66569158 .. 66569854
697 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035411

Sequence Viewer

Length: 432 bp
ATGGACCGCTTCTTCGATGAACTCGCTACCAAGTCCCTCTCCCTCTCCAATCTGGTCCTCCCCATTGCCGTCGCCATGGATTCGCCTGGCCCATTTCGGGCCGATCGCTCCTTAAAAAAAGGCGATTCAAGACACAGGGCTTCCTTATTAGAGAACAAGCAGAAGAGAAGCCAAGTAATCTCCACCGCTGGCGCCGCTCTTCTTCAACATCAATCTCATCAATTCATCATTCTCTTGGATTTATTCAATCAGAAAATGAATGTTCCTGACAATTTGCTCGAGAATGAGAATGTTGTTGCTCCCGTGACCTCCATCGCTGGCCTTGCAGCAGCCAAGAACCTCAACAAGCAGAGCCACAAACCCGTCACACTTAGCGAGAAACTTCCTGTTCTCTTTCGACTCCTTGGCAAACCGCGCAATCTTCGCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.86

Weight (kDa)

10.22

Isoelectric Point (pI)

55.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AccBSI CCGCTC 1 cut(s) 197
AccII CGCG 1 cut(s) 415
AciI CCGC 4 cut(s) 7, 186, 195, 413
AcyI GRCGYC 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 3 cut(s) 129, 206, 247
AjnI CCWGG 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 3 cut(s) 88, 99, 319
ApeKI GCWGC 2 cut(s) 326, 329
ArsI GACNNNNNNTTYG 1 cut(s) 28
AspLEI GCGC 2 cut(s) 194, 417
AspS9I GGNCC 4 cut(s) 4, 55, 89, 99
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 2 cut(s) 4, 55
BanI GGYRCC 1 cut(s) 191
BbvI GCAGC 2 cut(s) 338, 341
BccI CCATC 1 cut(s) 320
BceAI ACGGC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 195
BisI GCNGC 3 cut(s) 195, 327, 330
BlsI GCNGC 3 cut(s) 196, 328, 331
Bme1390I CCNGG 1 cut(s) 87
Bme18I GGWCC 2 cut(s) 4, 55
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 4 cut(s) 4, 55, 89, 99
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 75, 403
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 427
Bse3DI GCAATG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 2 cut(s) 75, 403
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 427
BseXI GCAGC 2 cut(s) 338, 341
Bsh1236I CGCG 1 cut(s) 415
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 3 cut(s) 90, 101, 321
BshNI GGYRCC 1 cut(s) 191
BsiEI CGRYCG 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 278
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 3 cut(s) 90, 101, 321
BsoBI CYCGRG 1 cut(s) 278
Bsp143I GATC 1 cut(s) 103
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 4 cut(s) 7, 186, 195, 413
BspANI GGCC 3 cut(s) 90, 101, 321
BspFNI CGCG 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 193
BspQI GCTCTTC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 191
BsrBI CCGCTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 63
BsrI ACTGG 1 cut(s) 427
BssECI CCNNGG 2 cut(s) 75, 403
BssMI GATC 1 cut(s) 103
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 2 cut(s) 75, 403
Bst2UI CCWGG 1 cut(s) 87
Bst6I CTCTTC 2 cut(s) 158, 204
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 190, 319
BstDEI CTNAG 1 cut(s) 371
BstDSI CCRYGG 1 cut(s) 75
BstFNI CGCG 1 cut(s) 415
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 2 cut(s) 194, 417
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 4 cut(s) 194, 323, 414, 423
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstUI CGCG 1 cut(s) 415
BstV1I GCAGC 2 cut(s) 338, 341
BsuRI GGCC 3 cut(s) 90, 101, 321
BtgI CCRYGG 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 298
Cac8I GCNNGC 2 cut(s) 190, 319
CfoI GCGC 2 cut(s) 194, 417
Cfr13I GGNCC 4 cut(s) 4, 55, 89, 99
CviAII CATG 1 cut(s) 76
CviJI RGCY 7 cut(s) 90, 101, 140, 171, 321, 332, 354
CviKI_1 RGCY 7 cut(s) 90, 101, 140, 171, 321, 332, 354
DdeI CTNAG 1 cut(s) 371
DinI GGCGCC 1 cut(s) 193
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eam1104I CTCTTC 2 cut(s) 158, 204
EarI CTCTTC 2 cut(s) 158, 204
Eco130I CCWWGG 2 cut(s) 75, 403
Eco47I GGWCC 2 cut(s) 4, 55
Eco88I CYCGRG 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 85
EcoT14I CCWWGG 2 cut(s) 75, 403
EgeI GGCGCC 1 cut(s) 193
EheI GGCGCC 1 cut(s) 193
ErhI CCWWGG 2 cut(s) 75, 403
FaeI CATG 1 cut(s) 79
FaiI YATR 1 cut(s) 77
FaqI GGGAC 1 cut(s) 19
FatI CATG 1 cut(s) 75
Fnu4HI GCNGC 3 cut(s) 195, 327, 330
Fsp4HI GCNGC 3 cut(s) 195, 327, 330
GlaI GCGC 2 cut(s) 193, 416
GluI GCNGC 3 cut(s) 195, 327, 330
HaeII RGCGCY 1 cut(s) 195
HaeIII GGCC 3 cut(s) 90, 101, 321
HhaI GCGC 2 cut(s) 194, 417
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 1 cut(s) 79
Hin6I GCGC 2 cut(s) 192, 415
HinP1I GCGC 2 cut(s) 192, 415
HinfI GANTC 3 cut(s) 80, 125, 399
Hpy188I TCNGA 1 cut(s) 252
Hpy188III TCNNGA 3 cut(s) 129, 266, 280
Hpy99I CGWCG 1 cut(s) 74
HpyCH4V TGCA 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 323, 414, 423
HpyF3I CTNAG 1 cut(s) 371
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 1 cut(s) 79
HspAI GCGC 2 cut(s) 192, 415
KasI GGCGCC 1 cut(s) 191
Kzo9I GATC 1 cut(s) 103
LguI GCTCTTC 1 cut(s) 204
LmnI GCTCC 2 cut(s) 113, 304
LpnPI CCDG 8 cut(s) 38, 72, 99, 121, 174, 279, 303, 399
Lsp1109I GCAGC 2 cut(s) 338, 341
MaeIII GTNAC 2 cut(s) 304, 364
MalI GATC 1 cut(s) 105
MbiI CCGCTC 1 cut(s) 197
MboI GATC 1 cut(s) 103
MboII GAAGA 5 cut(s) 4, 175, 191, 194, 413
MluCI AATT 2 cut(s) 221, 271
Mly113I GGCGCC 1 cut(s) 192
MlyI GAGTC 1 cut(s) 393
MnlI CCTC 5 cut(s) 47, 53, 68, 319, 350
MseI TTAA 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
MvnI CGCG 1 cut(s) 415
MwoI GCNNNNNNNGC 4 cut(s) 194, 323, 414, 423
NarI GGCGCC 1 cut(s) 192
NcoI CCATGG 1 cut(s) 75
NdeII GATC 1 cut(s) 103
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 1 cut(s) 193
NmuCI GTSAC 2 cut(s) 304, 364
PaeR7I CTCGAG 1 cut(s) 278
PciSI GCTCTTC 1 cut(s) 204
PfeI GAWTC 2 cut(s) 80, 125
PkrI GCNGC 3 cut(s) 196, 328, 331
Ple19I CGATCG 1 cut(s) 106
PleI GAGTC 1 cut(s) 393
PluTI GGCGCC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 4 cut(s) 4, 55, 89, 99
PvuI CGATCG 1 cut(s) 106
SapI GCTCTTC 1 cut(s) 204
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 3 cut(s) 195, 327, 330
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 4 cut(s) 4, 55, 89, 99
SchI GAGTC 1 cut(s) 393
ScrFI CCNGG 1 cut(s) 87
SetI ASST 2 cut(s) 311, 342
SfoI GGCGCC 1 cut(s) 193
Sfr274I CTCGAG 1 cut(s) 278
SinI GGWCC 2 cut(s) 4, 55
SlaI CTCGAG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 2 cut(s) 221, 271
SsiI CCGC 4 cut(s) 7, 186, 195, 413
SspDI GGCGCC 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 85
StyI CCWWGG 2 cut(s) 75, 403
TaqI TCGA 3 cut(s) 15, 279, 397
TasI AATT 2 cut(s) 221, 271
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 2 cut(s) 80, 125
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TseFI GTSAC 2 cut(s) 304, 364
TseI GCWGC 2 cut(s) 326, 329
Tsp45I GTSAC 2 cut(s) 304, 364
TspDTI ATGAA 3 cut(s) 33, 214, 272
VpaK11BI GGWCC 2 cut(s) 4, 55
XhoI CTCGAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.