Rmu_ssc0000083.1_g000018

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000083.1
OG0000382
Physical Location & Seq
Forward (+)
89589 .. 90549
961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000083.1_g000018.1.cds

Sequence Viewer

Length: 393 bp
atggaaggagagaaaggtagagtatgtgtaacgggaggttcagggttcatagggtcctggttgattctgaggcttattgagcaaggttactatgtcaatactactgttagatcagacccagaacacaagaaagatgtaagcttcctcacagctctgccaggagcagaagaaaggctccaaattttcaacgcggacctaagcaacccagaaagtttcaatgcagccatccaaggatgcgtcggagtgttccatgttgctactccggttgactttgaagacaaggaacctgaaccagtagtgaccaaacgatcaatcgatggagcccttgcaacaaggatgtggaagacatggatgagagtttttggagtgacacagattacattaaagctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00943 ko01110 map00943 map01110
Pfam Domains
Protein Families
Epimerase

Protein Analysis

130

Amino Acids

14.42

Weight (kDa)

5.67

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 191
AciI CCGC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 180
AgsI TTSAA 3 cut(s) 187, 217, 275
AjnI CCWGG 2 cut(s) 56, 157
AluBI AGCT 3 cut(s) 141, 152, 388
AluI AGCT 3 cut(s) 141, 152, 388
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 1 cut(s) 180
AspS9I GGNCC 2 cut(s) 54, 193
AvaII GGWCC 2 cut(s) 54, 193
BanII GRGCYC 1 cut(s) 325
BbsI GAAGAC 2 cut(s) 282, 350
BbvI GCAGC 1 cut(s) 233
BccI CCATC 2 cut(s) 233, 311
BciT130I CCWGG 2 cut(s) 58, 159
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 2 cut(s) 58, 159
Bme18I GGWCC 2 cut(s) 54, 193
BmgT120I GGNCC 2 cut(s) 54, 193
BmiI GGNNCC 4 cut(s) 55, 176, 285, 322
BmrFI CCNGG 2 cut(s) 58, 159
BmsI GCATC 1 cut(s) 224
BpiI GAAGAC 2 cut(s) 282, 350
Bpu10I CCTNAGC 1 cut(s) 197
Bsa29I ATCGAT 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 229
BsaWI WCCGGW 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 293
BseBI CCWGG 2 cut(s) 58, 159
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 4 cut(s) 225, 239, 342, 357
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 233
Bsh1236I CGCG 1 cut(s) 191
BshVI ATCGAT 1 cut(s) 315
BsiSI CCGG 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 2 cut(s) 110, 308
BspACI CCGC 1 cut(s) 191
BspCNI CTCAG 1 cut(s) 60
BspDI ATCGAT 1 cut(s) 315
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 4 cut(s) 55, 176, 285, 322
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 2 cut(s) 110, 308
BssT1I CCWWGG 1 cut(s) 229
Bst2UI CCWGG 2 cut(s) 58, 159
Bst4CI ACNGT 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 68, 197
BstF5I GGATG 4 cut(s) 225, 239, 342, 357
BstFNI CGCG 1 cut(s) 191
BstKTI GATC 2 cut(s) 113, 311
BstMBI GATC 2 cut(s) 110, 308
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 2 cut(s) 58, 159
BstSCI CCNGG 2 cut(s) 56, 157
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 233
BstV2I GAAGAC 2 cut(s) 282, 350
Bsu15I ATCGAT 1 cut(s) 315
BsuTUI ATCGAT 1 cut(s) 315
BtsCI GGATG 4 cut(s) 225, 239, 342, 357
Cfr13I GGNCC 2 cut(s) 54, 193
ClaI ATCGAT 1 cut(s) 315
CseI GACGC 1 cut(s) 226
CviAII CATG 2 cut(s) 251, 348
CviJI RGCY 7 cut(s) 73, 141, 152, 175, 224, 323, 388
CviKI_1 RGCY 7 cut(s) 73, 141, 152, 175, 224, 323, 388
DdeI CTNAG 2 cut(s) 68, 197
DpnI GATC 2 cut(s) 112, 310
DpnII GATC 2 cut(s) 110, 308
Eco130I CCWWGG 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 325
Eco47I GGWCC 2 cut(s) 54, 193
EcoO109I RGGNCCY 1 cut(s) 54
EcoRII CCWGG 2 cut(s) 56, 157
EcoT14I CCWWGG 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 2 cut(s) 254, 351
FaiI YATR 5 cut(s) 25, 50, 93, 252, 349
FatI CATG 2 cut(s) 250, 347
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 4 cut(s) 212, 246, 349, 364
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 1 cut(s) 222
GluI GCNGC 1 cut(s) 222
HapII CCGG 1 cut(s) 263
HgaI GACGC 1 cut(s) 226
Hin1II CATG 2 cut(s) 254, 351
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 2 cut(s) 139, 386
HinfI GANTC 1 cut(s) 64
HpaII CCGG 1 cut(s) 263
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 3 cut(s) 69, 115, 242
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 1 cut(s) 242
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 2 cut(s) 221, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 2 cut(s) 68, 197
Hsp92II CATG 2 cut(s) 254, 351
Kzo9I GATC 2 cut(s) 110, 308
LmnI GCTCC 3 cut(s) 161, 180, 320
Lsp1109I GCAGC 1 cut(s) 233
LweI GCATC 1 cut(s) 224
MaeIII GTNAC 4 cut(s) 28, 86, 298, 367
MalI GATC 2 cut(s) 112, 310
MboI GATC 2 cut(s) 110, 308
MboII GAAGA 3 cut(s) 179, 287, 355
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 3 cut(s) 29, 63, 155
MseI TTAA 2 cut(s) 383, 391
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 2 cut(s) 58, 159
MvaI CCWGG 2 cut(s) 58, 159
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 79
NdeII GATC 2 cut(s) 110, 308
NlaIII CATG 2 cut(s) 254, 351
NlaIV GGNNCC 4 cut(s) 55, 176, 285, 322
NmuCI GTSAC 2 cut(s) 298, 367
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 223
PpuMI RGGWCCY 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 54
Psp6I CCWGG 2 cut(s) 56, 157
PspGI CCWGG 2 cut(s) 56, 157
PspN4I GGNNCC 4 cut(s) 55, 176, 285, 322
PspPI GGNCC 2 cut(s) 54, 193
PspPPI RGGWCCY 1 cut(s) 54
SaqAI TTAA 2 cut(s) 383, 391
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 2 cut(s) 110, 308
Sau96I GGNCC 2 cut(s) 54, 193
ScrFI CCNGG 2 cut(s) 58, 159
SduI GDGCHC 1 cut(s) 325
SetI ASST 8 cut(s) 19, 40, 88, 143, 154, 198, 289, 390
SfaNI GCATC 1 cut(s) 224
SinI GGWCC 2 cut(s) 54, 193
Sse9I AATT 1 cut(s) 180
SsiI CCGC 1 cut(s) 191
StyD4I CCNGG 2 cut(s) 56, 157
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 106
TaqI TCGA 1 cut(s) 315
TasI AATT 1 cut(s) 180
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 2 cut(s) 383, 391
Tru9I TTAA 2 cut(s) 383, 391
TseFI GTSAC 2 cut(s) 298, 367
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 2 cut(s) 298, 367
TspDTI ATGAA 1 cut(s) 37
VpaK11BI GGWCC 2 cut(s) 54, 193
XapI RAATTY 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.