RchiOBHm_Chr1g0350431

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000382
Physical Location & Seq
Forward (+)
43584619 .. 43585635
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57629

Sequence Viewer

Length: 432 bp
ATGGAAGGAGAGAAAGGTAAAGTATGTGTAACGGGAGGTTCAGGGTTCATAGGGTCCTGGTTGATTCTGAGGCTTCTTGAGCATGGTTACTATGTCAATACTACTATTAGATTAGACCCAGATGTAAGCTTCCTCACAGCTCTGCCAGGAGCAGAAGAAAGGCTCCAAATTTTCAACGCTGACCTAAGCAACCCAGAAAGTTTCAATGCAGCCATCCAAGGATGCGTCGGAGTGTTCCATGTTGCTACTCCGGTTGACTTTGAAGACAAGGAACTTGAACCAGTAGTGACCAAACGATCAATCGATGGAGCCCTTGGTATCCTCAAGGCGTGCTTATATGCAAAAACAGTGAAACGAGTTGTGTACACTTCTAGTGCATCTGCCGTTGCATTTAGCAACAAGGATGTGGAAGACATGGATGAGAGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00943 ko01110 map00943 map01110
Pfam Domains
Protein Families
Epimerase

Protein Analysis

143

Amino Acids

15.51

Weight (kDa)

4.76

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 5 - 135 2.3e-08 NmrA-like family
Epimerase PF01370 8 - 133 3.2e-13 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 10 - 140 2e-15 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 10 - 127 3.5e-10 GDP-mannose 4,6 dehydratase
NAD_binding_10 PF13460 12 - 132 5.5e-08 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis pycom08g20120
rosa_chinensis RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 168
AfaI GTAC 1 cut(s) 365
AgsI TTSAA 4 cut(s) 175, 205, 263, 278
AjnI CCWGG 2 cut(s) 56, 145
AluBI AGCT 2 cut(s) 129, 140
AluI AGCT 2 cut(s) 129, 140
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 54
AvaII GGWCC 1 cut(s) 54
BanII GRGCYC 1 cut(s) 313
BbsI GAAGAC 2 cut(s) 270, 417
BbvI GCAGC 1 cut(s) 221
BccI CCATC 2 cut(s) 221, 299
BceAI ACGGC 1 cut(s) 368
BciT130I CCWGG 2 cut(s) 58, 147
BciVI GTATCC 1 cut(s) 329
BfaI CTAG 1 cut(s) 372
BfuI GTATCC 1 cut(s) 329
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 58, 147
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 3 cut(s) 55, 164, 310
BmrFI CCNGG 2 cut(s) 58, 147
BmsI GCATC 2 cut(s) 212, 386
BpiI GAAGAC 2 cut(s) 270, 417
Bpu10I CCTNAGC 1 cut(s) 185
BpuEI CTTGAG 2 cut(s) 98, 308
Bsa29I ATCGAT 1 cut(s) 303
BsaJI CCNNGG 2 cut(s) 217, 313
BsaWI WCCGGW 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 281
BseBI CCWGG 2 cut(s) 58, 147
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 217, 313
BseGI GGATG 4 cut(s) 213, 227, 409, 424
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 221
BshVI ATCGAT 1 cut(s) 303
BsiSI CCGG 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 313
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 1 cut(s) 296
BspCNI CTCAG 1 cut(s) 60
BspDI ATCGAT 1 cut(s) 303
BspLI GGNNCC 3 cut(s) 55, 164, 310
BsrGI TGTACA 1 cut(s) 363
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 217, 313
BssMI GATC 1 cut(s) 296
BssT1I CCWWGG 2 cut(s) 217, 313
Bst2UI CCWGG 2 cut(s) 58, 147
Bst4CI ACNGT 1 cut(s) 349
BstAUI TGTACA 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 2 cut(s) 68, 185
BstF5I GGATG 4 cut(s) 213, 227, 409, 424
BstKTI GATC 1 cut(s) 299
BstMBI GATC 1 cut(s) 296
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 2 cut(s) 58, 147
BstSCI CCNGG 2 cut(s) 56, 145
BstV1I GCAGC 1 cut(s) 221
BstV2I GAAGAC 2 cut(s) 270, 417
Bsu15I ATCGAT 1 cut(s) 303
BsuI GTATCC 1 cut(s) 329
BsuTUI ATCGAT 1 cut(s) 303
BtsCI GGATG 4 cut(s) 213, 227, 409, 424
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 54
ClaI ATCGAT 1 cut(s) 303
CseI GACGC 1 cut(s) 214
Csp6I GTAC 1 cut(s) 364
CviAII CATG 3 cut(s) 83, 239, 415
CviJI RGCY 6 cut(s) 73, 129, 140, 163, 212, 311
CviKI_1 RGCY 6 cut(s) 73, 129, 140, 163, 212, 311
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 2 cut(s) 68, 185
DpnI GATC 1 cut(s) 298
DpnII GATC 1 cut(s) 296
Eco130I CCWWGG 2 cut(s) 217, 313
Eco24I GRGCYC 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 54
EcoO109I RGGNCCY 1 cut(s) 54
EcoRII CCWGG 2 cut(s) 56, 145
EcoT14I CCWWGG 2 cut(s) 217, 313
EcoT38I GRGCYC 1 cut(s) 313
ErhI CCWWGG 2 cut(s) 217, 313
FaeI CATG 3 cut(s) 86, 242, 418
FaiI YATR 8 cut(s) 25, 50, 84, 93, 240, 337, 339, 416
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FatI CATG 3 cut(s) 82, 238, 414
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 3 cut(s) 200, 234, 416
FriOI GRGCYC 1 cut(s) 313
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 1 cut(s) 372
GluI GCNGC 1 cut(s) 210
HapII CCGG 1 cut(s) 251
HgaI GACGC 1 cut(s) 214
Hin1II CATG 3 cut(s) 86, 242, 418
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 127
HinfI GANTC 1 cut(s) 64
HpaII CCGG 1 cut(s) 251
Hpy166II GTNNAC 3 cut(s) 256, 364, 366
Hpy188I TCNGA 2 cut(s) 69, 230
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 3 cut(s) 256, 364, 366
Hpy99I CGWCG 1 cut(s) 230
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4V TGCA 4 cut(s) 209, 341, 377, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 2 cut(s) 68, 185
Hsp92II CATG 3 cut(s) 86, 242, 418
Kzo9I GATC 1 cut(s) 296
LmnI GCTCC 3 cut(s) 149, 168, 308
LpnPI CCDG 9 cut(s) 27, 43, 70, 132, 132, 159, 207, 264, 294
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 2 cut(s) 212, 386
MaeI CTAG 1 cut(s) 372
MaeIII GTNAC 3 cut(s) 28, 86, 286
MalI GATC 1 cut(s) 298
MboI GATC 1 cut(s) 296
MboII GAAGA 3 cut(s) 167, 275, 422
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 4 cut(s) 29, 63, 143, 332
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 2 cut(s) 58, 147
MvaI CCWGG 2 cut(s) 58, 147
MwoI GCNNNNNNNGC 1 cut(s) 79
NdeII GATC 1 cut(s) 296
NlaIII CATG 3 cut(s) 86, 242, 418
NlaIV GGNNCC 3 cut(s) 55, 164, 310
NmuCI GTSAC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 211
PpuMI RGGWCCY 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 54
Psp6I CCWGG 2 cut(s) 56, 145
PspGI CCWGG 2 cut(s) 56, 145
PspN4I GGNNCC 3 cut(s) 55, 164, 310
PspPI GGNCC 1 cut(s) 54
PspPPI RGGWCCY 1 cut(s) 54
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 1 cut(s) 296
Sau96I GGNCC 1 cut(s) 54
ScrFI CCNGG 2 cut(s) 58, 147
SduI GDGCHC 1 cut(s) 313
SetI ASST 5 cut(s) 19, 40, 131, 142, 186
SfaNI GCATC 2 cut(s) 212, 386
SinI GGWCC 1 cut(s) 54
SmlI CTYRAG 2 cut(s) 77, 323
SmoI CTYRAG 2 cut(s) 77, 323
Sse9I AATT 1 cut(s) 168
SspMI CTAG 1 cut(s) 372
StyD4I CCNGG 2 cut(s) 56, 145
StyI CCWWGG 2 cut(s) 217, 313
TaaI ACNGT 1 cut(s) 349
TaqI TCGA 1 cut(s) 303
TasI AATT 1 cut(s) 168
TatI WGTACW 1 cut(s) 363
TfiI GAWTC 1 cut(s) 64
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 37
TspRI CASTG 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 54
XapI RAATTY 1 cut(s) 168
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.