Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000382

Physical Location & Seq

Genomic Coordinates Forward (+)

43579862 .. 43581583

Gene Structure 1722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57627

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGGATCTCCGACGACCTCTTTGGGGACCTTCGGAGAAGTTTTCAGAGAAATCCGGTGGGTGGCGGTCAGTGACAAGATTACTGTAATCGTTGGACGGATTCCGGAGACCGTTGGACGGATTCTGGTGATCGTTGGCCGGATTCTGGCGAAACTGGTGGAGAGGACAGCCCTGGAATTTGCAGAGAGGAATGGTTTGGATCTTGTCACTGTGGTTTTGCCTATAGTAGTTGGACCCTTCGTTTGTCCAAATGTTCCTTCTTCCGTGTACATGGGCATGGCTCCCATTTTTGGTGACCAAGAGCAATGTAAATATCTTGTTAGCACATATATGGTGCACATAGATGATGTGGCGAGTGCCCATATCTTCCTTCTTGAACATGCTAATGCAAAAGGGAGGTACATTTGTTCGTCGATCCAAACAACGATTCATGATCAGGTAATGGAGATTAAAGGTTACAAAGGAACTAATGTATCGTCAATGAAACTATTGAATACTGGCTTCAAATTTAAATACGGCCTTGGGAAAATGTTTGATGGCGCTATTCAATCTTGCAAAGAGAAGGGTTTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0010422 GO:0010817 GO:0016128 GO:0016131 GO:0019216 GO:0019218 GO:0019222 GO:0031323 GO:0031326 GO:0032350 GO:0042445 GO:0044238 GO:0044424 GO:0044464 GO:0046885 GO:0046890 GO:0050789 GO:0050794 GO:0050810 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090030 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

191

Amino Acids

20.99

Weight (kDa)

8.66

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45400 AT2G45400 AT2G45400 AT2G45400
fragaria_vesca	FvH4_7g11750 FvH4_7g11760 FvH4_7g11780 FvH4_7g11781 FvH4_7g11781 FvH4_7g11790 FvH4_7g11790
malus_domestica	MD02G1205000.v1.1 MD07G1121700.v1.1 MD08G1231300.v1.1 MD08G1231400.v1.1 MD08G1231500.v1.1
prunus_persica	Prupe.2G144600_v2.0.a1 Prupe.2G144700_v2.0.a1 Prupe.2G144800_v2.0.a1
pyrus_communis	pycom08g20120
rosa_chinensis	RchiOBHm_Chr1g0350271 RchiOBHm_Chr1g0350281 RchiOBHm_Chr1g0350311 RchiOBHm_Chr1g0350321 RchiOBHm_Chr1g0350341 RchiOBHm_Chr1g0350361 RchiOBHm_Chr1g0350371 RchiOBHm_Chr1g0350401 RchiOBHm_Chr1g0350411 RchiOBHm_Chr1g0350431 RchiOBHm_Chr1g0350441 RchiOBHm_Chr1g0350471
rosa_laevigata	RLG00000028483 RLG00000028485 RLG00000028486 RLG00000028487 RLG00000028488 RLG00000028489 RLG00000028493 RLG00000028494 RLG00000035411
rosa_multiflora	Rmu_co8173820.1_g000001 Rmu_sc0001037.1_g000006 Rmu_sc0001864.1_g000002 Rmu_sc0001864.1_g000009 Rmu_ssc0000083.1_g000008 Rmu_ssc0000083.1_g000013 Rmu_ssc0000083.1_g000018
rosa_roxburghii	Rroxscaffold_4G00304840 Rroxscaffold_4G00304860 Rroxscaffold_4G00304890 Rroxscaffold_4G00304900 Rroxscaffold_4G00304920 Rroxscaffold_4G00304930
rosa_rugosa	Rorug01G0210800 Rorug01G0210900 Rorug01G0211000 Rorug01G0211100 Rorug01G0211200 Rorug01G0211300 Rorug01G0211300 Rorug01G0211400
rosa_samantha	Rh1AG225500 Rh1AG225600 Rh1AG225700 Rh1AG225800 Rh1AG225900 Rh1AG226000 Rh1BG193400 Rh1BG193600 Rh1BG193700 Rh1BG193800 Rh1BG193900 Rh1BG194000 Rh1BG194200 Rh1CG210300 Rh1CG210500 Rh1CG210600 Rh1CG210700 Rh1CG210900 Rh1DG221700 Rh1DG221900 Rh1DG222100 Rh1DG222200 Rh1DG222300 Rh1DG222400 Rh1DG222500 Rh2BG259100 Rh3DG280100 Rh5AG528000
rosa_wichuraiana	Rw0G018730 Rw0G018740 Rw0G018750 Rw0G018760 Rw0G018770 Rw0G018790 Rw1G019390 Rw1G019410 Rw1G019420 Rw1G019430 Rw1G019440 Rw1G019450 Rw1G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	3 cut(s)	13, 207, 409
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	2 cut(s)	176, 506
AfaI	GTAC	2 cut(s)	269, 401
AfiI	CCNNNNNNNGG	5 cut(s)	24, 61, 117, 145, 290
AgsI	TTSAA	4 cut(s)	377, 493, 505, 548
AjnI	CCWGG	1 cut(s)	171
AjuI	GAANNNNNNNTTGG	4 cut(s)	241, 273, 411, 443
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	101
Alw44I	GTGCAC	1 cut(s)	335
AlwI	GGATC	3 cut(s)	13, 207, 409
Aor13HI	TCCGGA	1 cut(s)	103
AoxI	GGCC	2 cut(s)	136, 517
ApaLI	GTGCAC	1 cut(s)	335
ApoI	RAATTY	2 cut(s)	176, 506
ArsI	GACNNNNNNTTYG	3 cut(s)	36, 225, 257
AspLEI	GCGC	1 cut(s)	542
AspS9I	GGNCC	2 cut(s)	27, 233
AsuHPI	GGTGA	2 cut(s)	139, 305
AvaII	GGWCC	2 cut(s)	27, 233
BaeGI	GKGCMC	2 cut(s)	339, 361
BaeI	ACNNNNGTAYC	4 cut(s)	391, 424, 456, 489
Bbv12I	GWGCWC	1 cut(s)	339
BccI	CCATC	1 cut(s)	530
BceAI	ACGGC	1 cut(s)	532
BciT130I	CCWGG	1 cut(s)	173
BclI	TGATCA	1 cut(s)	433
BcoDI	GTCTC	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	543
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	2 cut(s)	27, 233
BmgT120I	GGNCC	2 cut(s)	27, 233
BmiI	GGNNCC	3 cut(s)	28, 235, 282
BmrFI	CCNGG	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	171, 520
BsaWI	WCCGGW	2 cut(s)	54, 103
Bsc4I	CCNNNNNNNGG	5 cut(s)	24, 61, 117, 145, 290
Bse1I	ACTGG	2 cut(s)	159, 502
Bse3DI	GCAATG	1 cut(s)	311
BseAI	TCCGGA	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	171, 520
BseLI	CCNNNNNNNGG	5 cut(s)	24, 61, 117, 145, 290
BseMI	GCAATG	1 cut(s)	311
BseNI	ACTGG	2 cut(s)	159, 502
BseSI	GKGCMC	2 cut(s)	339, 361
BshFI	GGCC	2 cut(s)	138, 519
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	3 cut(s)	55, 104, 139
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	5 cut(s)	24, 61, 117, 145, 290
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	138, 519
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	2 cut(s)	339, 361
Bsp13I	TCCGGA	1 cut(s)	103
Bsp1407I	TGTACA	1 cut(s)	267
Bsp143I	GATC	5 cut(s)	5, 129, 199, 414, 433
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	2 cut(s)	138, 519
BspEI	TCCGGA	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	3 cut(s)	28, 235, 282
BspPI	GGATC	3 cut(s)	13, 207, 409
BspTNI	GGTCTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	311
BsrGI	TGTACA	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	159, 502
BssECI	CCNNGG	2 cut(s)	171, 520
BssMI	GATC	5 cut(s)	5, 129, 199, 414, 433
BssT1I	CCWWGG	1 cut(s)	520
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	3 cut(s)	85, 112, 211
BstAUI	TGTACA	1 cut(s)	267
BstEII	GGTNACC	1 cut(s)	293
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	1 cut(s)	542
BstKTI	GATC	5 cut(s)	8, 132, 202, 417, 436
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	5 cut(s)	5, 129, 199, 414, 433
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	383
BstPI	GGTNACC	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	171
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	2 cut(s)	339, 361
BstX2I	RGATCY	2 cut(s)	5, 199
BstYI	RGATCY	2 cut(s)	5, 199
BsuRI	GGCC	2 cut(s)	138, 519
BtsIMutI	CAGTG	2 cut(s)	76, 207
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	1 cut(s)	542
Cfr13I	GGNCC	2 cut(s)	27, 233
Csp6I	GTAC	2 cut(s)	268, 400
CviAII	CATG	4 cut(s)	271, 277, 380, 431
CviJI	RGCY	5 cut(s)	138, 170, 281, 501, 519
CviKI_1	RGCY	5 cut(s)	138, 170, 281, 501, 519
CviQI	GTAC	2 cut(s)	268, 400
DpnI	GATC	5 cut(s)	7, 131, 201, 416, 435
DpnII	GATC	5 cut(s)	5, 129, 199, 414, 433
DraI	TTTAAA	1 cut(s)	511
EaeI	YGGCCR	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	520
Eco31I	GGTCTC	1 cut(s)	101
Eco47I	GGWCC	2 cut(s)	27, 233
Eco91I	GGTNACC	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	27
EcoO65I	GGTNACC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	520
FaeI	CATG	4 cut(s)	274, 280, 383, 434
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	4 cut(s)	270, 276, 379, 430
FbaI	TGATCA	1 cut(s)	433
GlaI	GCGC	1 cut(s)	541
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	2 cut(s)	138, 519
HapII	CCGG	3 cut(s)	55, 104, 139
HhaI	GCGC	1 cut(s)	542
Hin1II	CATG	4 cut(s)	274, 280, 383, 434
Hin6I	GCGC	1 cut(s)	540
HinP1I	GCGC	1 cut(s)	540
HinfI	GANTC	4 cut(s)	100, 121, 142, 427
HpaII	CCGG	3 cut(s)	55, 104, 139
HphI	GGTGA	2 cut(s)	139, 305
Hpy166II	GTNNAC	2 cut(s)	268, 337
Hpy188I	TCNGA	3 cut(s)	12, 35, 47
Hpy188III	TCNNGA	3 cut(s)	104, 374, 431
Hpy8I	GTNNAC	2 cut(s)	268, 337
Hpy99I	CGWCG	2 cut(s)	16, 415
HpyAV	CCTTC	5 cut(s)	40, 247, 267, 380, 556
HpyCH4III	ACNGT	3 cut(s)	85, 112, 211
HpyCH4V	TGCA	4 cut(s)	182, 337, 389, 555
Hsp92II	CATG	4 cut(s)	274, 280, 383, 434
HspAI	GCGC	1 cut(s)	540
Kpn2I	TCCGGA	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	5 cut(s)	5, 129, 199, 414, 433
LmnI	GCTCC	1 cut(s)	286
MaeIII	GTNAC	4 cut(s)	71, 205, 293, 455
MalI	GATC	5 cut(s)	7, 131, 201, 416, 435
MboI	GATC	5 cut(s)	5, 129, 199, 414, 433
MboII	GAAGA	2 cut(s)	252, 358
MflI	RGATCY	2 cut(s)	5, 199
MhlI	GDGCHC	2 cut(s)	339, 361
MluCI	AATT	2 cut(s)	176, 506
MmeI	TCCRAC	4 cut(s)	35, 73, 94, 211
MnlI	CCTC	4 cut(s)	28, 156, 180, 390
MroI	TCCGGA	1 cut(s)	103
MseI	TTAA	2 cut(s)	450, 510
MslI	CAYNNNNRTG	4 cut(s)	275, 329, 342, 384
MspI	CCGG	3 cut(s)	55, 104, 139
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
NdeII	GATC	5 cut(s)	5, 129, 199, 414, 433
NlaIII	CATG	4 cut(s)	274, 280, 383, 434
NlaIV	GGNNCC	3 cut(s)	28, 235, 282
NmuCI	GTSAC	3 cut(s)	71, 205, 293
NspI	RCATGY	1 cut(s)	383
PagI	TCATGA	1 cut(s)	430
PfeI	GAWTC	4 cut(s)	100, 121, 142, 427
PpuMI	RGGWCCY	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	171
PspEI	GGTNACC	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	3 cut(s)	28, 235, 282
PspPI	GGNCC	2 cut(s)	27, 233
PspPPI	RGGWCCY	1 cut(s)	27
PsuI	RGATCY	2 cut(s)	5, 199
RsaI	GTAC	2 cut(s)	269, 401
RsaNI	GTAC	2 cut(s)	268, 400
RseI	CAYNNNNRTG	4 cut(s)	275, 329, 342, 384
SaqAI	TTAA	2 cut(s)	450, 510
Sau3AI	GATC	5 cut(s)	5, 129, 199, 414, 433
Sau96I	GGNCC	2 cut(s)	27, 233
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	2 cut(s)	339, 361
SetI	ASST	5 cut(s)	20, 32, 401, 441, 457
SfcI	CTRYAG	1 cut(s)	222
SinI	GGWCC	2 cut(s)	27, 233
SmiI	ATTTAAAT	1 cut(s)	511
SmiMI	CAYNNNNRTG	4 cut(s)	275, 329, 342, 384
Sse9I	AATT	2 cut(s)	176, 506
SsiI	CCGC	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	520
SwaI	ATTTAAAT	1 cut(s)	511
TaaI	ACNGT	3 cut(s)	85, 112, 211
TaqI	TCGA	1 cut(s)	413
TasI	AATT	2 cut(s)	176, 506
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	4 cut(s)	100, 121, 142, 427
Tru1I	TTAA	2 cut(s)	450, 510
Tru9I	TTAA	2 cut(s)	450, 510
TscAI	CASTG	2 cut(s)	76, 214
TseFI	GTSAC	3 cut(s)	71, 205, 293
Tsp45I	GTSAC	3 cut(s)	71, 205, 293
TspDTI	ATGAA	2 cut(s)	419, 497
TspGWI	ACGGA	3 cut(s)	112, 133, 253
TspRI	CASTG	2 cut(s)	76, 214
VneI	GTGCAC	1 cut(s)	335
VpaK11BI	GGWCC	2 cut(s)	27, 233
XapI	RAATTY	2 cut(s)	176, 506
XceI	RCATGY	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.